Wall clock time and date at job start Tue Mar 31 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46956 * 2 1 4 4 C 1.34224 * 117.00106 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00387 * 179.97438 * 4 3 2 7 7 C 1.52993 * 110.85554 * 62.33253 * 6 4 3 8 8 C 1.54632 * 110.96562 * 298.54864 * 6 4 3 9 9 C 1.51286 * 104.19238 * 217.04427 * 8 6 4 10 10 O 1.21283 * 124.93983 * 196.22957 * 9 8 6 11 11 N 1.34421 * 110.11375 * 16.25007 * 9 8 6 12 12 C 1.46505 * 124.34562 * 180.40758 * 11 9 8 13 13 N 1.46900 * 109.47146 * 90.02805 * 12 11 9 14 14 C 1.46932 * 110.98459 * 329.22710 * 13 12 11 15 15 C 1.53033 * 109.47844 * 174.17925 * 14 13 12 16 16 C 1.53126 * 109.31116 * 59.15895 * 15 14 13 17 17 C 1.53114 * 109.16112 * 302.32725 * 16 15 14 18 18 H 1.09001 * 109.50092 * 297.67692 * 17 16 15 19 19 C 1.50693 * 109.50662 * 177.59381 * 17 16 15 20 20 H 1.07997 * 120.00406 * 245.44033 * 19 17 16 21 21 C 1.37885 * 119.99852 * 65.43178 * 19 17 16 22 22 N 1.31509 * 119.99890 * 9.56714 * 21 19 17 23 23 Si 1.86793 * 119.99819 * 189.56932 * 21 19 17 24 24 H 1.48501 * 109.47280 * 94.99140 * 23 21 19 25 25 H 1.48507 * 109.47218 * 214.99185 * 23 21 19 26 26 H 1.48504 * 109.47534 * 334.98879 * 23 21 19 27 27 C 1.46843 * 110.99772 * 205.00038 * 13 12 11 28 28 C 1.46758 * 111.30033 * 0.67683 * 11 9 8 29 29 H 1.09001 * 109.47023 * 60.01018 * 1 2 3 30 30 H 1.09000 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47763 * 300.00144 * 1 2 3 32 32 H 1.09001 * 109.47367 * 239.99590 * 2 1 3 33 33 H 1.09000 * 109.46733 * 119.99442 * 2 1 3 34 34 H 1.09002 * 109.47918 * 297.66900 * 7 6 4 35 35 H 1.09000 * 109.47493 * 57.66839 * 7 6 4 36 36 H 1.09005 * 109.47532 * 177.66865 * 7 6 4 37 37 H 1.08992 * 110.48864 * 98.36495 * 8 6 4 38 38 H 1.09001 * 110.48890 * 335.72085 * 8 6 4 39 39 H 1.09003 * 109.47266 * 330.02501 * 12 11 9 40 40 H 1.09002 * 109.46824 * 210.03043 * 12 11 9 41 41 H 1.08998 * 109.51478 * 54.15714 * 14 13 12 42 42 H 1.08997 * 109.45398 * 294.16567 * 14 13 12 43 43 H 1.08996 * 109.50750 * 299.19843 * 15 14 13 44 44 H 1.08998 * 109.50642 * 179.11847 * 15 14 13 45 45 H 1.09004 * 109.51978 * 62.23283 * 16 15 14 46 46 H 1.08995 * 109.52004 * 182.41549 * 16 15 14 47 47 H 0.97003 * 119.99991 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46431 * 65.82227 * 27 13 12 49 49 H 1.08999 * 109.45561 * 305.84233 * 27 13 12 50 50 H 1.09000 * 110.24948 * 101.72059 * 28 11 9 51 51 H 1.09010 * 110.24296 * 223.71511 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.5148 3.6953 1.2656 8 6 3.4951 3.7118 -1.2691 9 6 4.7131 4.5345 -1.6275 10 8 4.7131 5.4820 -2.3846 11 7 5.7953 4.0621 -0.9853 12 6 7.1396 4.6330 -1.1006 13 7 7.3232 5.6652 -0.0715 14 6 6.0495 6.3263 0.2437 15 6 6.2507 7.2889 1.4163 16 6 7.3091 8.3299 1.0409 17 6 8.6102 7.6128 0.6706 18 1 8.9801 7.0609 1.5346 19 6 9.6395 8.6269 0.2429 20 1 9.9980 8.6360 -0.7758 21 6 10.1236 9.5435 1.1522 22 7 9.8346 9.4186 2.4291 23 14 11.1900 10.9625 0.5704 24 1 10.3415 12.1611 0.3493 25 1 12.2160 11.2655 1.6005 26 1 11.8603 10.5892 -0.7010 27 6 8.3415 6.6409 -0.4807 28 6 5.4585 2.8971 -0.1587 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.4303 3.8014 1.2937 35 1 3.8485 3.1418 2.1433 36 1 3.9764 4.6828 1.2616 37 1 2.6464 4.3607 -1.0534 38 1 3.2519 3.0193 -2.0749 39 1 7.2617 5.0785 -2.0879 40 1 7.8815 3.8464 -0.9628 41 1 5.3066 5.5757 0.5135 42 1 5.7037 6.8825 -0.6276 43 1 6.5832 6.7315 2.2919 44 1 5.3097 7.7912 1.6404 45 1 6.9597 8.9137 0.1892 46 1 7.4862 8.9914 1.8889 47 1 10.1754 10.0631 3.0688 48 1 7.9851 7.1956 -1.3486 49 1 9.2630 6.1181 -0.7371 50 1 5.7649 1.9784 -0.6588 51 1 5.9393 2.9749 0.8166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853524419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:49 Heat of formation + Delta-G solvation = -111.798926 kcal Electronic energy + Delta-G solvation = -31038.494867 eV Core-core repulsion = 26937.996122 eV Total energy + Delta-G solvation = -4100.498745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64874 -40.28994 -37.91757 -37.31943 -36.49267 -34.47768 -32.87405 -32.06142 -31.25224 -29.87055 -28.81332 -26.93436 -25.86096 -24.88141 -24.51287 -22.83113 -22.03628 -21.35048 -20.49480 -19.48198 -18.60991 -17.89957 -17.29515 -17.07050 -16.43673 -16.35240 -15.85445 -15.51769 -14.78107 -14.63071 -14.55976 -14.33547 -13.92564 -13.85422 -13.52497 -13.39197 -13.21885 -13.11476 -13.07784 -12.67722 -12.61231 -12.36772 -12.28102 -12.09899 -11.97910 -11.83963 -11.66399 -11.57806 -11.40815 -10.97613 -10.93452 -10.79794 -10.71642 -10.63720 -10.13440 -9.94131 -9.83264 -9.45606 -9.11222 -8.90627 -8.73653 -8.27436 -7.64929 -5.98889 -4.00028 1.74116 2.09043 2.43952 2.90915 3.32948 3.40191 3.43283 3.74525 3.92696 4.23865 4.36186 4.40694 4.47178 4.51278 4.56181 4.58968 4.80992 5.11187 5.17952 5.21131 5.29522 5.31638 5.32945 5.34103 5.41768 5.43762 5.52274 5.53982 5.57855 5.68241 5.83640 5.90533 6.00412 6.05438 6.27162 6.30895 6.40714 6.49840 6.70012 6.72501 6.92557 7.00677 7.20036 7.29775 7.30798 7.61921 7.70984 7.77218 8.02230 8.05491 8.13335 8.49216 9.04054 9.62793 11.10308 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.002390 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.563328 B =11713.749443 C =11893.475885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.351 6.351 4 C 0.483 3.517 5 O -0.499 6.499 6 C -0.067 4.067 7 C -0.141 4.141 8 C -0.140 4.140 9 C 0.520 3.480 10 O -0.519 6.519 11 N -0.614 5.614 12 C 0.291 3.709 13 N -0.550 5.550 14 C 0.059 3.941 15 C -0.116 4.116 16 C -0.105 4.105 17 C 0.056 3.944 18 H 0.042 0.958 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.069 3.931 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.259 0.741 48 H 0.023 0.977 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 -18.991 -3.009 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.267 6.267 4 C 0.325 3.675 5 O -0.386 6.386 6 C -0.069 4.069 7 C -0.198 4.198 8 C -0.180 4.180 9 C 0.306 3.694 10 O -0.394 6.394 11 N -0.349 5.349 12 C 0.081 3.919 13 N -0.278 5.278 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.144 4.144 17 C 0.037 3.963 18 H 0.060 0.940 19 C -0.555 4.555 20 H 0.072 0.928 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.715 3.285 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.058 4.058 28 C -0.001 4.001 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.021 -18.932 -2.841 26.291 hybrid contribution 0.338 0.941 -0.931 1.366 sum -17.683 -17.991 -3.772 25.507 Atomic orbital electron populations 1.21815 0.92382 1.03101 1.03725 1.23096 0.95554 0.79886 1.02794 1.86506 1.23929 1.32622 1.83677 1.23061 0.80856 0.91441 0.72148 1.90693 1.60404 1.42630 1.44858 1.21397 0.96380 0.90059 0.99082 1.21937 1.02979 1.01042 0.93855 1.22460 0.98879 0.99904 0.96775 1.20646 0.85263 0.83642 0.79831 1.90778 1.85154 1.27412 1.36045 1.48394 1.09429 1.30848 1.46234 1.22144 0.80635 0.93969 0.95117 1.62518 1.09353 1.15276 1.40614 1.22115 0.90745 0.95886 0.98093 1.21657 0.98966 0.97450 0.97302 1.21594 0.95039 0.97048 1.00673 1.18649 0.92487 0.92033 0.93102 0.94016 1.21112 1.22944 1.15119 0.96355 0.92794 1.24922 0.96082 0.97917 0.94722 1.69976 1.45874 1.35656 1.00892 0.86670 0.80188 0.83153 0.78524 1.20783 1.21339 1.19928 1.22331 0.92157 0.92318 0.98947 1.22097 0.91014 0.89305 0.97718 0.91345 0.90138 0.91315 0.91088 0.91009 0.90476 0.90972 0.89787 0.86515 0.87499 0.92575 0.88902 0.92276 0.95016 0.92107 0.93665 0.94881 0.90904 0.93094 0.95902 0.91946 0.89261 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 37.16 0.38 -0.25 16 2 C 0.06 0.38 6.19 37.16 0.23 0.61 16 3 O -0.35 -2.89 10.19 -39.24 -0.40 -3.29 16 4 C 0.48 4.58 6.52 36.01 0.23 4.81 16 5 O -0.50 -5.85 15.32 -18.75 -0.29 -6.14 16 6 C -0.07 -0.61 0.94 -153.94 -0.15 -0.75 16 7 C -0.14 -1.14 8.48 37.15 0.31 -0.83 16 8 C -0.14 -1.34 5.95 -26.74 -0.16 -1.50 16 9 C 0.52 7.18 6.24 -10.86 -0.07 7.12 16 10 O -0.52 -9.37 16.63 5.56 0.09 -9.27 16 11 N -0.61 -8.02 1.86 -175.79 -0.33 -8.34 16 12 C 0.29 4.41 6.40 -63.31 -0.41 4.00 16 13 N -0.55 -10.03 4.91 -238.50 -1.17 -11.20 16 14 C 0.06 1.07 4.27 -3.79 -0.02 1.06 16 15 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 16 C -0.11 -2.50 5.09 -26.61 -0.14 -2.63 16 17 C 0.06 1.40 2.13 -91.69 -0.20 1.21 16 18 H 0.04 1.16 8.09 -51.93 -0.42 0.74 16 19 C -0.52 -14.23 8.48 -34.44 -0.29 -14.52 16 20 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 21 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 22 N -0.89 -25.50 12.18 55.43 0.68 -24.83 16 23 Si 0.89 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.07 1.48 4.52 -3.83 -0.02 1.46 16 28 C 0.12 1.27 6.07 -3.03 -0.02 1.25 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.81 5.76 -51.93 -0.30 0.51 16 37 H 0.12 0.97 7.91 -51.93 -0.41 0.56 16 38 H 0.11 0.89 7.89 -51.93 -0.41 0.48 16 39 H 0.06 0.92 7.64 -51.93 -0.40 0.53 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.92 3.77 -51.93 -0.20 0.72 16 42 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.91 6.98 -51.93 -0.36 1.54 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 1.29 8.12 -51.93 -0.42 0.86 16 50 H 0.09 0.92 7.08 -51.93 -0.37 0.55 16 51 H 0.10 1.02 7.92 -51.92 -0.41 0.61 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -32.29 396.92 -9.69 -41.97 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -8.68 Total: -1.64 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.55 Total: 0.34 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.82 Total: -44.37 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.59 Total: -18.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.29 -9.69 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.827 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds