Wall clock time and date at job start Tue Mar 31 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46956 * 2 1 4 4 C 1.34224 * 117.00106 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00387 * 179.97438 * 4 3 2 7 7 C 1.52993 * 110.85554 * 62.33253 * 6 4 3 8 8 C 1.54632 * 110.96562 * 298.54864 * 6 4 3 9 9 C 1.51286 * 104.19238 * 217.04427 * 8 6 4 10 10 O 1.21283 * 124.93983 * 196.22957 * 9 8 6 11 11 N 1.34421 * 110.11375 * 16.25007 * 9 8 6 12 12 C 1.46505 * 124.34562 * 180.40758 * 11 9 8 13 13 N 1.46900 * 109.47146 * 90.02805 * 12 11 9 14 14 C 1.46932 * 110.98459 * 329.22710 * 13 12 11 15 15 C 1.53033 * 109.47844 * 174.17925 * 14 13 12 16 16 C 1.53126 * 109.31116 * 59.15895 * 15 14 13 17 17 C 1.53114 * 109.16112 * 302.32725 * 16 15 14 18 18 H 1.09001 * 109.50092 * 297.67692 * 17 16 15 19 19 C 1.50693 * 109.50662 * 177.59381 * 17 16 15 20 20 H 1.07997 * 120.00406 * 245.44033 * 19 17 16 21 21 C 1.37885 * 119.99852 * 65.43178 * 19 17 16 22 22 N 1.31509 * 119.99890 * 9.56714 * 21 19 17 23 23 Si 1.86793 * 119.99819 * 189.56932 * 21 19 17 24 24 H 1.48501 * 109.47280 * 94.99140 * 23 21 19 25 25 H 1.48507 * 109.47218 * 214.99185 * 23 21 19 26 26 H 1.48504 * 109.47534 * 334.98879 * 23 21 19 27 27 C 1.46843 * 110.99772 * 205.00038 * 13 12 11 28 28 C 1.46758 * 111.30033 * 0.67683 * 11 9 8 29 29 H 1.09001 * 109.47023 * 60.01018 * 1 2 3 30 30 H 1.09000 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47763 * 300.00144 * 1 2 3 32 32 H 1.09001 * 109.47367 * 239.99590 * 2 1 3 33 33 H 1.09000 * 109.46733 * 119.99442 * 2 1 3 34 34 H 1.09002 * 109.47918 * 297.66900 * 7 6 4 35 35 H 1.09000 * 109.47493 * 57.66839 * 7 6 4 36 36 H 1.09005 * 109.47532 * 177.66865 * 7 6 4 37 37 H 1.08992 * 110.48864 * 98.36495 * 8 6 4 38 38 H 1.09001 * 110.48890 * 335.72085 * 8 6 4 39 39 H 1.09003 * 109.47266 * 330.02501 * 12 11 9 40 40 H 1.09002 * 109.46824 * 210.03043 * 12 11 9 41 41 H 1.08998 * 109.51478 * 54.15714 * 14 13 12 42 42 H 1.08997 * 109.45398 * 294.16567 * 14 13 12 43 43 H 1.08996 * 109.50750 * 299.19843 * 15 14 13 44 44 H 1.08998 * 109.50642 * 179.11847 * 15 14 13 45 45 H 1.09004 * 109.51978 * 62.23283 * 16 15 14 46 46 H 1.08995 * 109.52004 * 182.41549 * 16 15 14 47 47 H 0.97003 * 119.99991 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46431 * 65.82227 * 27 13 12 49 49 H 1.08999 * 109.45561 * 305.84233 * 27 13 12 50 50 H 1.09000 * 110.24948 * 101.72059 * 28 11 9 51 51 H 1.09010 * 110.24296 * 223.71511 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.5148 3.6953 1.2656 8 6 3.4951 3.7118 -1.2691 9 6 4.7131 4.5345 -1.6275 10 8 4.7131 5.4820 -2.3846 11 7 5.7953 4.0621 -0.9853 12 6 7.1396 4.6330 -1.1006 13 7 7.3232 5.6652 -0.0715 14 6 6.0495 6.3263 0.2437 15 6 6.2507 7.2889 1.4163 16 6 7.3091 8.3299 1.0409 17 6 8.6102 7.6128 0.6706 18 1 8.9801 7.0609 1.5346 19 6 9.6395 8.6269 0.2429 20 1 9.9980 8.6360 -0.7758 21 6 10.1236 9.5435 1.1522 22 7 9.8346 9.4186 2.4291 23 14 11.1900 10.9625 0.5704 24 1 10.3415 12.1611 0.3493 25 1 12.2160 11.2655 1.6005 26 1 11.8603 10.5892 -0.7010 27 6 8.3415 6.6409 -0.4807 28 6 5.4585 2.8971 -0.1587 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.4303 3.8014 1.2937 35 1 3.8485 3.1418 2.1433 36 1 3.9764 4.6828 1.2616 37 1 2.6464 4.3607 -1.0534 38 1 3.2519 3.0193 -2.0749 39 1 7.2617 5.0785 -2.0879 40 1 7.8815 3.8464 -0.9628 41 1 5.3066 5.5757 0.5135 42 1 5.7037 6.8825 -0.6276 43 1 6.5832 6.7315 2.2919 44 1 5.3097 7.7912 1.6404 45 1 6.9597 8.9137 0.1892 46 1 7.4862 8.9914 1.8889 47 1 10.1754 10.0631 3.0688 48 1 7.9851 7.1956 -1.3486 49 1 9.2630 6.1181 -0.7371 50 1 5.7649 1.9784 -0.6588 51 1 5.9393 2.9749 0.8166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853524419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:49 Heat of formation + Delta-G solvation = -130.618518 kcal Electronic energy + Delta-G solvation = -31039.310946 eV Core-core repulsion = 26937.996122 eV Total energy + Delta-G solvation = -4101.314824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53216 -41.20584 -39.48300 -38.17425 -37.42402 -35.92877 -34.49739 -32.98571 -32.32505 -31.69965 -29.72657 -27.89933 -27.09898 -26.70346 -25.34742 -23.67571 -23.38313 -23.03072 -21.27274 -20.57968 -20.38476 -18.79507 -18.39307 -18.05175 -17.81778 -17.41937 -16.94414 -16.76133 -16.40223 -15.77862 -15.68067 -15.33244 -15.13833 -14.93411 -14.85186 -14.61405 -14.43730 -14.30016 -14.06964 -13.89049 -13.60702 -13.41861 -13.29639 -13.20565 -13.14858 -12.88167 -12.82209 -12.66859 -12.53179 -12.49377 -12.36520 -12.20406 -11.92068 -11.77433 -11.56773 -11.49339 -11.40388 -10.98848 -10.88102 -10.70688 -10.42662 -10.12479 -9.16670 -8.13116 -6.21124 1.01331 1.35283 1.39686 1.41098 1.41581 1.51276 1.88723 2.42552 2.94337 3.06011 3.12960 3.17257 3.55137 3.59720 3.80236 4.05428 4.06338 4.11138 4.11230 4.21882 4.35195 4.37536 4.39918 4.45819 4.50663 4.52316 4.60886 4.63895 4.66898 4.75489 4.82163 4.87239 4.90014 4.91267 4.97965 5.01069 5.08072 5.15546 5.17366 5.28490 5.37293 5.42745 5.44598 5.62909 5.89134 5.97093 6.00898 6.12048 6.16932 6.42879 6.60463 6.90299 6.97160 7.44948 8.95677 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.002390 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.563328 B =11713.749443 C =11893.475885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.491 3.509 5 O -0.523 6.523 6 C -0.058 4.058 7 C -0.139 4.139 8 C -0.129 4.129 9 C 0.512 3.488 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.292 3.708 13 N -0.550 5.550 14 C 0.069 3.931 15 C -0.108 4.108 16 C -0.099 4.099 17 C 0.056 3.944 18 H 0.010 0.990 19 C -0.538 4.538 20 H 0.049 0.951 21 C 0.018 3.982 22 N -0.914 5.914 23 Si 0.949 3.051 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.084 3.916 28 C 0.121 3.879 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.042 0.958 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.010 0.990 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.043 0.957 47 H 0.261 0.739 48 H 0.008 0.992 49 H 0.067 0.933 50 H 0.094 0.906 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.155 -20.476 -3.013 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.334 3.666 5 O -0.412 6.412 6 C -0.060 4.060 7 C -0.196 4.196 8 C -0.168 4.168 9 C 0.301 3.699 10 O -0.445 6.445 11 N -0.347 5.347 12 C 0.082 3.918 13 N -0.278 5.278 14 C -0.059 4.059 15 C -0.146 4.146 16 C -0.137 4.137 17 C 0.037 3.963 18 H 0.028 0.972 19 C -0.576 4.576 20 H 0.068 0.932 21 C -0.181 4.181 22 N -0.552 5.552 23 Si 0.775 3.225 24 H -0.204 1.204 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.044 4.044 28 C -0.002 4.002 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.028 0.972 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.026 0.974 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.698 -20.453 -2.835 28.538 hybrid contribution 0.823 1.326 -0.924 1.814 sum -18.875 -19.127 -3.759 27.134 Atomic orbital electron populations 1.21831 0.90596 1.04291 1.03808 1.23344 0.96940 0.78904 1.02855 1.86505 1.23004 1.33866 1.83174 1.22972 0.81148 0.91016 0.71462 1.90694 1.61039 1.43345 1.46140 1.21311 0.95190 0.90121 0.99358 1.21948 1.04121 1.00033 0.93516 1.22459 0.97161 0.99773 0.97442 1.21372 0.86491 0.83171 0.78854 1.90757 1.86002 1.29647 1.38081 1.48462 1.08567 1.31247 1.46415 1.22101 0.82671 0.93644 0.93421 1.62497 1.08873 1.14739 1.41675 1.22050 0.91278 0.96129 0.96424 1.21570 0.98493 0.96693 0.97802 1.21423 0.95949 0.97527 0.98826 1.18545 0.92507 0.92173 0.93057 0.97228 1.21470 1.23767 1.16162 0.96243 0.93224 1.25673 0.97490 1.00170 0.94812 1.70086 1.46885 1.36458 1.01809 0.85680 0.78605 0.79941 0.78254 1.20407 1.20725 1.19305 1.21990 0.93454 0.92266 0.96710 1.22229 0.92295 0.88220 0.97418 0.91261 0.88426 0.91181 0.91088 0.90990 0.88666 0.90219 0.91125 0.84714 0.85885 0.94011 0.86478 0.89189 0.97185 0.92190 0.91401 0.96129 0.93871 0.92990 0.97358 0.91436 0.88745 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 71.98 0.74 -0.10 16 2 C 0.05 0.55 6.19 71.98 0.45 0.99 16 3 O -0.35 -4.80 10.19 -51.36 -0.52 -5.32 16 4 C 0.49 8.03 6.52 71.24 0.46 8.50 16 5 O -0.52 -11.19 15.32 21.96 0.34 -10.85 16 6 C -0.06 -0.89 0.94 -51.81 -0.05 -0.94 16 7 C -0.14 -1.84 8.48 71.98 0.61 -1.23 16 8 C -0.13 -2.12 5.95 30.59 0.18 -1.94 16 9 C 0.51 13.50 6.24 87.90 0.55 14.05 16 10 O -0.57 -20.37 16.63 -3.04 -0.05 -20.42 16 11 N -0.61 -15.12 1.86 -828.67 -1.54 -16.66 16 12 C 0.29 8.61 6.40 170.80 1.09 9.70 16 13 N -0.55 -19.93 4.91 -908.48 -4.46 -24.39 16 14 C 0.07 2.45 4.27 86.31 0.37 2.81 16 15 C -0.11 -4.19 6.09 30.65 0.19 -4.00 16 16 C -0.10 -4.83 5.09 30.67 0.16 -4.68 16 17 C 0.06 2.90 2.13 -11.49 -0.02 2.87 16 18 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 19 C -0.54 -30.43 8.48 25.60 0.22 -30.21 16 20 H 0.05 2.78 7.77 -2.91 -0.02 2.75 16 21 C 0.02 1.01 5.22 84.66 0.44 1.46 16 22 N -0.91 -53.80 12.18 21.45 0.26 -53.54 16 23 Si 0.95 44.54 29.55 68.60 2.03 46.56 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.08 3.64 4.52 86.33 0.39 4.03 16 28 C 0.12 2.25 6.07 86.89 0.53 2.78 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.74 8.13 -2.39 -0.02 0.73 16 33 H 0.07 0.75 8.13 -2.39 -0.02 0.73 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.15 5.76 -2.38 -0.01 1.14 16 37 H 0.13 1.81 7.91 -2.39 -0.02 1.79 16 38 H 0.12 1.69 7.89 -2.39 -0.02 1.68 16 39 H 0.04 1.38 7.64 -2.39 -0.02 1.36 16 40 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.09 2.64 3.77 -2.39 -0.01 2.64 16 42 H 0.01 0.40 7.16 -2.39 -0.02 0.39 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.04 2.33 6.98 -2.39 -0.02 2.32 16 47 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.07 2.82 8.12 -2.39 -0.02 2.81 16 50 H 0.09 1.73 7.08 -2.39 -0.02 1.71 16 51 H 0.10 1.87 7.92 -2.38 -0.02 1.85 16 Total: -1.00 -71.69 396.92 3.26 -68.44 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.91 Total: 12.07 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.30 Total: 4.10 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -5.74 Total: -94.59 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.24 Total: -36.59 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.69 3.26 -68.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.183 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds