Wall clock time and date at job start Tue Mar 31 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46771 * 2 1 4 4 C 1.42901 * 113.99745 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47051 * 30.00663 * 4 3 2 6 6 C 1.50694 * 109.47206 * 270.00205 * 4 3 2 7 7 O 1.21278 * 120.00347 * 352.11875 * 6 4 3 8 8 N 1.34783 * 119.99774 * 172.11433 * 6 4 3 9 9 C 1.46963 * 120.59586 * 4.27381 * 8 6 4 10 10 C 1.53369 * 108.63593 * 235.20191 * 9 8 6 11 11 N 1.46965 * 108.63360 * 310.57754 * 10 9 8 12 12 C 1.34774 * 120.59008 * 235.19931 * 11 10 9 13 13 O 1.21684 * 120.00096 * 355.53589 * 12 11 10 14 14 C 1.46380 * 119.99702 * 175.52606 * 12 11 10 15 15 H 1.08004 * 119.99828 * 23.33614 * 14 12 11 16 16 C 1.40045 * 119.99895 * 203.32964 * 14 12 11 17 17 N 1.30679 * 119.99924 * 179.60657 * 16 14 12 18 18 Si 1.86799 * 120.00099 * 359.60859 * 16 14 12 19 19 H 1.48506 * 109.47214 * 274.11468 * 18 16 14 20 20 H 1.48497 * 109.47178 * 34.11745 * 18 16 14 21 21 H 1.48501 * 109.46793 * 154.11884 * 18 16 14 22 22 C 1.46966 * 118.81314 * 55.47743 * 11 10 9 23 23 C 1.46965 * 120.59069 * 184.24925 * 8 6 4 24 24 C 1.52996 * 109.46797 * 149.99864 * 4 3 2 25 25 C 1.54273 * 110.02921 * 51.52350 * 24 4 3 26 26 C 1.54967 * 104.15615 * 217.13335 * 25 24 4 27 27 C 1.54887 * 102.77999 * 37.88530 * 26 25 24 28 28 C 1.53873 * 110.03864 * 294.30327 * 24 4 3 29 29 H 1.09000 * 109.46630 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47365 * 299.99462 * 1 2 3 31 31 H 1.09000 * 109.47163 * 60.00176 * 1 2 3 32 32 H 1.08993 * 109.47365 * 240.00537 * 2 1 3 33 33 H 1.09000 * 109.47163 * 119.99824 * 2 1 3 34 34 H 1.09003 * 109.60803 * 115.45489 * 9 8 6 35 35 H 1.08998 * 109.60686 * 354.94787 * 9 8 6 36 36 H 1.08989 * 109.61386 * 190.82975 * 10 9 8 37 37 H 1.09004 * 109.60695 * 70.31801 * 10 9 8 38 38 H 0.96996 * 120.00098 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.60972 * 64.26625 * 22 11 10 40 40 H 1.09008 * 109.60842 * 184.77728 * 22 11 10 41 41 H 1.09004 * 109.60867 * 244.53861 * 23 8 6 42 42 H 1.08997 * 109.61395 * 5.04912 * 23 8 6 43 43 H 1.09006 * 110.01756 * 172.90603 * 24 4 3 44 44 H 1.08993 * 110.48733 * 335.77844 * 25 24 4 45 45 H 1.09002 * 110.48847 * 98.42845 * 25 24 4 46 46 H 1.09004 * 110.72107 * 279.57090 * 26 25 24 47 47 H 1.09002 * 110.92345 * 156.29888 * 26 25 24 48 48 H 1.08997 * 110.48911 * 203.40637 * 27 26 25 49 49 H 1.08997 * 110.59575 * 80.81625 * 27 26 25 50 50 H 1.08994 * 110.03092 * 238.56975 * 28 24 4 51 51 H 1.09001 * 110.02723 * 359.94803 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9310 1.5001 1.4215 7 8 3.1430 1.5822 2.3398 8 7 5.2542 1.4443 1.6720 9 6 6.2248 1.4387 0.5685 10 6 7.1264 0.2067 0.7150 11 7 7.6244 0.1509 2.0966 12 6 8.9475 0.0951 2.3470 13 8 9.7379 0.0086 1.4259 14 6 9.4336 0.1388 3.7271 15 1 8.7849 -0.1589 4.5377 16 6 10.7397 0.5663 3.9961 17 7 11.1712 0.6126 5.2288 18 14 11.8652 1.0704 2.5931 19 1 12.5436 -0.1321 2.0461 20 1 11.0634 1.7162 1.5230 21 1 12.8834 2.0278 3.0950 22 6 6.6536 0.1508 3.2000 23 6 5.7522 1.3885 3.0536 24 6 3.8408 2.7457 -0.7207 25 6 3.0691 3.9477 -0.1379 26 6 2.7785 4.8441 -1.3682 27 6 2.4722 3.8106 -2.4804 28 6 3.4619 2.6587 -2.2095 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 6.8316 2.3433 0.6105 35 1 5.6959 1.3939 -0.3835 36 1 7.9672 0.2847 0.0260 37 1 6.5532 -0.6942 0.4961 38 1 12.0757 0.9090 5.4152 39 1 6.0475 -0.7540 3.1539 40 1 7.1822 0.1919 4.1524 41 1 6.3254 2.2894 3.2725 42 1 4.9113 1.3105 3.7427 43 1 4.9141 2.9056 -0.6173 44 1 2.1376 3.6167 0.3212 45 1 3.6843 4.4810 0.5868 46 1 3.6535 5.4409 -1.6258 47 1 1.9153 5.4848 -1.1878 48 1 2.6517 4.2443 -3.4642 49 1 1.4442 3.4566 -2.4024 50 1 4.3511 2.7771 -2.8286 51 1 2.9867 1.7002 -2.4184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866657323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:32 Heat of formation + Delta-G solvation = -123.157779 kcal Electronic energy + Delta-G solvation = -31524.683666 eV Core-core repulsion = 27423.692364 eV Total energy + Delta-G solvation = -4100.991302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73941 -38.90866 -37.93161 -37.15408 -36.10820 -33.48069 -32.91590 -32.10982 -31.14677 -29.89510 -28.86308 -27.80507 -26.41044 -25.39458 -23.43380 -23.01982 -22.16051 -20.86958 -20.17674 -19.96922 -18.78950 -17.42137 -16.99387 -16.62754 -16.07014 -15.99172 -15.64533 -15.38757 -15.20730 -14.95959 -14.69062 -14.50096 -14.11222 -13.99572 -13.63108 -13.40813 -13.19026 -12.94066 -12.60269 -12.49360 -12.27319 -12.24668 -12.09853 -11.83965 -11.58508 -11.53511 -11.32238 -11.29314 -11.18130 -11.15442 -10.92396 -10.89749 -10.80829 -10.71969 -10.62518 -10.42404 -10.35345 -9.62155 -9.17954 -9.07874 -8.75893 -8.04821 -7.57239 -6.66636 -4.89209 2.61051 2.88205 3.38420 3.41988 3.48343 3.67349 4.05829 4.11020 4.23691 4.41068 4.45172 4.45713 4.58917 4.78175 4.89525 4.97937 5.03557 5.09226 5.10787 5.19237 5.29553 5.30032 5.33674 5.36771 5.43500 5.47196 5.49486 5.55334 5.60346 5.71107 5.73005 5.73567 5.77462 5.80054 5.90635 5.92833 5.94523 6.08932 6.09688 6.12193 6.16270 6.32205 6.34844 6.59732 6.91398 6.94558 7.44867 7.49910 7.78617 8.21658 8.22813 8.62219 9.01674 9.89259 10.34554 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003091 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.749273 B = 9056.084820 C = 9753.772033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.348 6.348 4 C 0.083 3.917 5 H 0.083 0.917 6 C 0.493 3.507 7 O -0.531 6.531 8 N -0.605 5.605 9 C 0.086 3.914 10 C 0.104 3.896 11 N -0.632 5.632 12 C 0.557 3.443 13 O -0.611 6.611 14 C -0.534 4.534 15 H 0.091 0.909 16 C 0.101 3.899 17 N -0.831 5.831 18 Si 0.957 3.043 19 H -0.278 1.278 20 H -0.257 1.257 21 H -0.319 1.319 22 C 0.108 3.892 23 C 0.097 3.903 24 C -0.094 4.094 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.114 4.114 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.282 0.718 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.329 3.752 -13.211 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.021 3.979 5 H 0.101 0.899 6 C 0.280 3.720 7 O -0.407 6.407 8 N -0.340 5.340 9 C -0.037 4.037 10 C -0.021 4.021 11 N -0.367 5.367 12 C 0.366 3.634 13 O -0.502 6.502 14 C -0.570 4.570 15 H 0.109 0.891 16 C -0.116 4.116 17 N -0.461 5.461 18 Si 0.789 3.211 19 H -0.204 1.204 20 H -0.182 1.182 21 H -0.250 1.250 22 C -0.016 4.016 23 C -0.026 4.026 24 C -0.113 4.113 25 C -0.154 4.154 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.152 4.152 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.391 3.909 -13.011 22.865 hybrid contribution 0.738 -0.197 -0.340 0.836 sum -17.653 3.713 -13.350 22.442 Atomic orbital electron populations 1.21690 0.93494 1.02130 1.03112 1.22568 0.95896 0.83787 0.99982 1.87980 1.18015 1.26230 1.94380 1.21993 0.83547 0.99818 0.92506 0.89934 1.21290 0.82060 0.76597 0.92091 1.90676 1.54668 1.49078 1.46249 1.48142 1.05229 1.72665 1.07972 1.22430 0.91442 1.00440 0.89423 1.21612 0.97751 0.95432 0.87318 1.47751 1.06354 1.78640 1.03913 1.18416 0.79229 0.75302 0.90500 1.90285 1.53221 1.58555 1.48128 1.20717 0.98957 1.46594 0.90722 0.89087 1.25713 0.97798 0.91057 0.97074 1.69531 1.18437 1.37494 1.20637 0.85438 0.77067 0.78322 0.80290 1.20413 1.18152 1.25014 1.21988 0.90693 0.95517 0.93422 1.22202 0.98421 0.99734 0.82270 1.22122 1.00893 0.93057 0.95189 1.22354 1.01101 0.94585 0.97337 1.22481 1.01073 0.97342 0.95151 1.22288 0.99517 0.95628 0.98226 1.22133 0.99300 0.99458 0.94312 0.91214 0.91625 0.91998 0.93509 0.93188 0.90527 0.89309 0.88300 0.93111 0.90762 0.93163 0.86946 0.90753 0.88742 0.88797 0.89838 0.91990 0.91742 0.91704 0.92022 0.91460 0.91531 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.55 6.46 37.16 0.24 0.79 16 3 O -0.35 -4.22 7.99 -55.02 -0.44 -4.66 16 4 C 0.08 0.95 1.14 -27.89 -0.03 0.92 16 5 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 6 C 0.49 7.21 6.64 -10.99 -0.07 7.14 16 7 O -0.53 -9.54 15.94 -14.23 -0.23 -9.77 16 8 N -0.60 -8.77 2.95 -172.22 -0.51 -9.28 16 9 C 0.09 1.14 5.24 -3.60 -0.02 1.12 16 10 C 0.10 1.69 6.58 -3.60 -0.02 1.66 16 11 N -0.63 -12.75 2.94 -173.88 -0.51 -13.26 16 12 C 0.56 14.02 7.21 -12.99 -0.09 13.93 16 13 O -0.61 -16.74 11.77 5.20 0.06 -16.68 16 14 C -0.53 -14.39 9.20 -35.63 -0.33 -14.72 16 15 H 0.09 2.44 6.25 -52.48 -0.33 2.12 16 16 C 0.10 2.79 5.52 -17.36 -0.10 2.69 16 17 N -0.83 -23.04 13.92 55.55 0.77 -22.27 16 18 Si 0.96 24.37 26.12 -169.99 -4.44 19.93 16 19 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.26 -6.78 6.32 56.52 0.36 -6.42 16 21 H -0.32 -7.76 7.11 56.52 0.40 -7.36 16 22 C 0.11 1.90 6.53 -3.37 -0.02 1.88 16 23 C 0.10 1.53 6.60 -3.37 -0.02 1.51 16 24 C -0.09 -0.94 2.24 -89.50 -0.20 -1.14 16 25 C -0.12 -1.26 5.85 -25.03 -0.15 -1.41 16 26 C -0.12 -1.08 6.91 -24.70 -0.17 -1.25 16 27 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 28 C -0.11 -0.95 6.29 -25.62 -0.16 -1.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.89 4.55 -51.93 -0.24 0.66 16 36 H 0.10 1.73 7.01 -51.94 -0.36 1.37 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.28 7.23 8.29 -40.82 -0.34 6.89 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 2.13 5.43 -51.92 -0.28 1.85 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.48 7.01 -51.93 -0.36 1.12 16 43 H 0.09 0.91 5.51 -51.93 -0.29 0.63 16 44 H 0.08 1.07 6.89 -51.93 -0.36 0.71 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.54 7.59 -51.93 -0.39 0.15 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -32.64 389.44 -8.86 -41.50 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.50 Total: -1.38 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.94 Total: 10.00 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.25 Total: -44.81 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.60 Total: -31.11 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.44 Total: 19.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.64 -8.86 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866657323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.658 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds