Wall clock time and date at job start Tue Mar 31 2020 22:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46771 * 2 1 4 4 C 1.42901 * 113.99745 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47051 * 30.00663 * 4 3 2 6 6 C 1.50694 * 109.47206 * 270.00205 * 4 3 2 7 7 O 1.21278 * 120.00347 * 352.11875 * 6 4 3 8 8 N 1.34783 * 119.99774 * 172.11433 * 6 4 3 9 9 C 1.46963 * 120.59586 * 4.27381 * 8 6 4 10 10 C 1.53369 * 108.63593 * 235.20191 * 9 8 6 11 11 N 1.46965 * 108.63360 * 310.57754 * 10 9 8 12 12 C 1.34774 * 120.59008 * 235.19931 * 11 10 9 13 13 O 1.21684 * 120.00096 * 355.53589 * 12 11 10 14 14 C 1.46380 * 119.99702 * 175.52606 * 12 11 10 15 15 H 1.08004 * 119.99828 * 23.33614 * 14 12 11 16 16 C 1.40045 * 119.99895 * 203.32964 * 14 12 11 17 17 N 1.30679 * 119.99924 * 179.60657 * 16 14 12 18 18 Si 1.86799 * 120.00099 * 359.60859 * 16 14 12 19 19 H 1.48506 * 109.47214 * 274.11468 * 18 16 14 20 20 H 1.48497 * 109.47178 * 34.11745 * 18 16 14 21 21 H 1.48501 * 109.46793 * 154.11884 * 18 16 14 22 22 C 1.46966 * 118.81314 * 55.47743 * 11 10 9 23 23 C 1.46965 * 120.59069 * 184.24925 * 8 6 4 24 24 C 1.52996 * 109.46797 * 149.99864 * 4 3 2 25 25 C 1.54273 * 110.02921 * 51.52350 * 24 4 3 26 26 C 1.54967 * 104.15615 * 217.13335 * 25 24 4 27 27 C 1.54887 * 102.77999 * 37.88530 * 26 25 24 28 28 C 1.53873 * 110.03864 * 294.30327 * 24 4 3 29 29 H 1.09000 * 109.46630 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47365 * 299.99462 * 1 2 3 31 31 H 1.09000 * 109.47163 * 60.00176 * 1 2 3 32 32 H 1.08993 * 109.47365 * 240.00537 * 2 1 3 33 33 H 1.09000 * 109.47163 * 119.99824 * 2 1 3 34 34 H 1.09003 * 109.60803 * 115.45489 * 9 8 6 35 35 H 1.08998 * 109.60686 * 354.94787 * 9 8 6 36 36 H 1.08989 * 109.61386 * 190.82975 * 10 9 8 37 37 H 1.09004 * 109.60695 * 70.31801 * 10 9 8 38 38 H 0.96996 * 120.00098 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.60972 * 64.26625 * 22 11 10 40 40 H 1.09008 * 109.60842 * 184.77728 * 22 11 10 41 41 H 1.09004 * 109.60867 * 244.53861 * 23 8 6 42 42 H 1.08997 * 109.61395 * 5.04912 * 23 8 6 43 43 H 1.09006 * 110.01756 * 172.90603 * 24 4 3 44 44 H 1.08993 * 110.48733 * 335.77844 * 25 24 4 45 45 H 1.09002 * 110.48847 * 98.42845 * 25 24 4 46 46 H 1.09004 * 110.72107 * 279.57090 * 26 25 24 47 47 H 1.09002 * 110.92345 * 156.29888 * 26 25 24 48 48 H 1.08997 * 110.48911 * 203.40637 * 27 26 25 49 49 H 1.08997 * 110.59575 * 80.81625 * 27 26 25 50 50 H 1.08994 * 110.03092 * 238.56975 * 28 24 4 51 51 H 1.09001 * 110.02723 * 359.94803 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9310 1.5001 1.4215 7 8 3.1430 1.5822 2.3398 8 7 5.2542 1.4443 1.6720 9 6 6.2248 1.4387 0.5685 10 6 7.1264 0.2067 0.7150 11 7 7.6244 0.1509 2.0966 12 6 8.9475 0.0951 2.3470 13 8 9.7379 0.0086 1.4259 14 6 9.4336 0.1388 3.7271 15 1 8.7849 -0.1589 4.5377 16 6 10.7397 0.5663 3.9961 17 7 11.1712 0.6126 5.2288 18 14 11.8652 1.0704 2.5931 19 1 12.5436 -0.1321 2.0461 20 1 11.0634 1.7162 1.5230 21 1 12.8834 2.0278 3.0950 22 6 6.6536 0.1508 3.2000 23 6 5.7522 1.3885 3.0536 24 6 3.8408 2.7457 -0.7207 25 6 3.0691 3.9477 -0.1379 26 6 2.7785 4.8441 -1.3682 27 6 2.4722 3.8106 -2.4804 28 6 3.4619 2.6587 -2.2095 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 6.8316 2.3433 0.6105 35 1 5.6959 1.3939 -0.3835 36 1 7.9672 0.2847 0.0260 37 1 6.5532 -0.6942 0.4961 38 1 12.0757 0.9090 5.4152 39 1 6.0475 -0.7540 3.1539 40 1 7.1822 0.1919 4.1524 41 1 6.3254 2.2894 3.2725 42 1 4.9113 1.3105 3.7427 43 1 4.9141 2.9056 -0.6173 44 1 2.1376 3.6167 0.3212 45 1 3.6843 4.4810 0.5868 46 1 3.6535 5.4409 -1.6258 47 1 1.9153 5.4848 -1.1878 48 1 2.6517 4.2443 -3.4642 49 1 1.4442 3.4566 -2.4024 50 1 4.3511 2.7771 -2.8286 51 1 2.9867 1.7002 -2.4184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866657323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:31 Heat of formation + Delta-G solvation = -142.705882 kcal Electronic energy + Delta-G solvation = -31525.531336 eV Core-core repulsion = 27423.692364 eV Total energy + Delta-G solvation = -4101.838972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84328 -40.35012 -39.16018 -38.09679 -37.52174 -34.99690 -34.95773 -33.06169 -32.32490 -30.78925 -29.59016 -29.33565 -28.09254 -26.42750 -24.75549 -23.84188 -23.51265 -21.76170 -21.50031 -20.74734 -20.21439 -18.83803 -18.32100 -17.95996 -17.71307 -16.94074 -16.81313 -16.57897 -16.42061 -16.17590 -15.98957 -15.79298 -15.60289 -15.07603 -14.66236 -14.53534 -14.40787 -14.17417 -14.08134 -13.98754 -13.68376 -13.39116 -13.16534 -13.01607 -12.86729 -12.79774 -12.47957 -12.37642 -12.35956 -12.27057 -12.21289 -11.93687 -11.88676 -11.64376 -11.60798 -11.48923 -11.30919 -11.24684 -11.18117 -10.26029 -10.12772 -10.03605 -9.17370 -8.76589 -6.99190 1.33667 1.38334 1.47304 1.61947 1.74520 2.08143 2.31727 2.57946 2.66532 3.25598 3.28711 3.61492 3.65935 3.79598 3.86630 3.90385 3.99346 4.12706 4.16863 4.19600 4.27167 4.34016 4.40696 4.46986 4.47398 4.59673 4.62673 4.63962 4.69420 4.72570 4.78213 4.82835 4.87817 4.91305 4.97692 5.01263 5.03239 5.11826 5.12245 5.24835 5.29130 5.34168 5.35441 5.46415 5.56106 5.67050 5.91468 6.05262 6.19907 6.34179 6.61902 7.04556 7.06709 7.92546 8.29160 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003091 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.749273 B = 9056.084820 C = 9753.772033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.086 3.914 5 H 0.108 0.892 6 C 0.492 3.508 7 O -0.569 6.569 8 N -0.605 5.605 9 C 0.095 3.905 10 C 0.099 3.901 11 N -0.631 5.631 12 C 0.557 3.443 13 O -0.635 6.635 14 C -0.552 4.552 15 H 0.082 0.918 16 C 0.067 3.933 17 N -0.857 5.857 18 Si 1.003 2.997 19 H -0.289 1.289 20 H -0.272 1.272 21 H -0.302 1.302 22 C 0.112 3.888 23 C 0.105 3.895 24 C -0.093 4.093 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.110 4.110 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.290 0.710 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.307 3.833 -16.006 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.279 6.279 4 C 0.025 3.975 5 H 0.126 0.874 6 C 0.281 3.719 7 O -0.448 6.448 8 N -0.339 5.339 9 C -0.028 4.028 10 C -0.024 4.024 11 N -0.364 5.364 12 C 0.364 3.636 13 O -0.528 6.528 14 C -0.589 4.589 15 H 0.100 0.900 16 C -0.148 4.148 17 N -0.488 5.488 18 Si 0.834 3.166 19 H -0.216 1.216 20 H -0.197 1.197 21 H -0.231 1.231 22 C -0.012 4.012 23 C -0.019 4.019 24 C -0.111 4.111 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.102 0.898 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.400 3.998 -15.809 25.344 hybrid contribution 0.912 -0.257 0.560 1.101 sum -18.488 3.741 -15.250 24.256 Atomic orbital electron populations 1.21696 0.92503 1.03261 1.02647 1.22747 0.96837 0.83047 1.00234 1.87995 1.18275 1.27448 1.94201 1.22116 0.83586 1.01537 0.90276 0.87431 1.21994 0.81451 0.75205 0.93274 1.90660 1.55540 1.50733 1.47821 1.48192 1.05680 1.72467 1.07585 1.22473 0.90957 0.98734 0.90615 1.21886 0.98135 0.97952 0.84476 1.47668 1.05217 1.77088 1.06429 1.18221 0.80904 0.74983 0.89481 1.90258 1.54546 1.59516 1.48448 1.20947 0.99151 1.46998 0.91788 0.90022 1.26239 0.98839 0.91385 0.98287 1.69550 1.19293 1.38641 1.21327 0.84766 0.76035 0.77673 0.78106 1.21580 1.19745 1.23138 1.21996 0.90237 0.97057 0.91902 1.21971 0.97873 0.98402 0.83612 1.22175 1.00953 0.91683 0.96330 1.22303 0.99847 0.95526 0.97928 1.22477 1.01484 0.97366 0.94440 1.22284 0.99255 0.95354 0.98571 1.22142 1.00090 0.99763 0.92788 0.89313 0.93348 0.91162 0.91030 0.94999 0.90771 0.85300 0.89257 0.90877 0.89941 0.91694 0.88795 0.91455 0.88703 0.88182 0.92215 0.93423 0.90935 0.91659 0.90469 0.92029 0.89762 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.87 6.46 71.98 0.46 1.34 16 3 O -0.36 -8.11 7.99 -130.06 -1.04 -9.15 16 4 C 0.09 1.76 1.14 29.84 0.03 1.79 16 5 H 0.11 1.67 7.15 -2.39 -0.02 1.66 16 6 C 0.49 13.70 6.64 87.65 0.58 14.28 16 7 O -0.57 -20.37 15.94 15.90 0.25 -20.11 16 8 N -0.60 -16.53 2.95 -817.16 -2.41 -18.94 16 9 C 0.10 2.24 5.24 86.41 0.45 2.70 16 10 C 0.10 2.99 6.58 86.41 0.57 3.56 16 11 N -0.63 -24.90 2.94 -822.24 -2.42 -27.32 16 12 C 0.56 28.02 7.21 86.36 0.62 28.64 16 13 O -0.63 -34.53 11.77 -4.30 -0.05 -34.58 16 14 C -0.55 -30.21 9.20 24.83 0.23 -29.98 16 15 H 0.08 4.51 6.25 -2.91 -0.02 4.49 16 16 C 0.07 3.73 5.52 85.30 0.47 4.20 16 17 N -0.86 -47.88 13.92 21.84 0.30 -47.58 16 18 Si 1.00 50.26 26.12 68.60 1.79 52.05 16 19 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 20 H -0.27 -14.16 6.32 99.48 0.63 -13.53 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 C 0.11 3.89 6.53 86.56 0.57 4.46 16 23 C 0.11 3.27 6.60 86.56 0.57 3.85 16 24 C -0.09 -1.60 2.24 -10.07 -0.02 -1.62 16 25 C -0.12 -2.44 5.85 31.70 0.19 -2.26 16 26 C -0.12 -1.88 6.91 31.91 0.22 -1.66 16 27 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 28 C -0.11 -1.40 6.29 31.32 0.20 -1.21 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.03 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 2.03 4.55 -2.39 -0.01 2.02 16 36 H 0.09 2.94 7.01 -2.39 -0.02 2.92 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.29 14.88 8.29 -92.71 -0.77 14.11 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 3.64 5.43 -2.38 -0.01 3.62 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.09 2.98 7.01 -2.39 -0.02 2.96 16 43 H 0.10 1.60 5.51 -2.38 -0.01 1.59 16 44 H 0.06 1.52 6.89 -2.39 -0.02 1.50 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.07 0.87 7.59 -2.39 -0.02 0.85 16 Total: -1.00 -71.10 389.44 3.37 -67.73 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.84 Total: 12.62 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.10 Total: 25.29 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -4.52 Total: -93.84 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -0.84 Total: -63.85 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.79 Total: 52.05 kcal Total: -71.10 3.37 -67.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866657323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.979 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds