Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47220 * 2 1 4 4 C 1.42898 * 114.00383 * 180.02562 * 3 2 1 5 5 C 1.54148 * 111.83000 * 298.71827 * 4 3 2 6 6 C 1.54856 * 104.25965 * 262.60332 * 5 4 3 7 7 C 1.54314 * 102.98697 * 322.14879 * 6 5 4 8 8 C 1.54203 * 104.60333 * 37.33453 * 7 6 5 9 9 N 1.46505 * 112.23077 * 100.65295 * 8 7 6 10 10 C 1.34769 * 120.00345 * 60.12380 * 9 8 7 11 11 O 1.21593 * 119.99986 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00357 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99986 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47328 * 177.47093 * 13 12 10 15 15 C 1.50701 * 115.55025 * 294.83980 * 14 13 12 16 16 H 1.07998 * 120.00260 * 94.85011 * 15 14 13 17 17 C 1.37880 * 119.99448 * 275.12423 * 15 14 13 18 18 N 1.31516 * 120.00292 * 6.46630 * 17 15 14 19 19 Si 1.86804 * 119.99736 * 186.46193 * 17 15 14 20 20 H 1.48498 * 109.47020 * 60.00218 * 19 17 15 21 21 H 1.48504 * 109.47048 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47272 * 300.00018 * 19 17 15 23 23 C 1.53002 * 117.49582 * 80.50198 * 14 13 12 24 24 C 1.53000 * 117.50399 * 149.16211 * 14 13 12 25 25 C 1.54778 * 109.01239 * 225.70053 * 8 7 6 26 26 C 1.54962 * 102.22426 * 92.68099 * 25 8 7 27 27 O 1.43654 * 110.98502 * 60.95058 * 4 3 2 28 28 H 1.09005 * 109.47057 * 60.00375 * 1 2 3 29 29 H 1.09004 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47006 * 299.99766 * 1 2 3 31 31 H 1.09007 * 109.47176 * 240.00426 * 2 1 3 32 32 H 1.09001 * 109.47205 * 120.00359 * 2 1 3 33 33 H 1.09004 * 110.47016 * 21.29809 * 5 4 3 34 34 H 1.09000 * 110.47523 * 143.77244 * 5 4 3 35 35 H 1.09002 * 110.76184 * 80.05180 * 6 5 4 36 36 H 1.09003 * 110.75954 * 203.24336 * 6 5 4 37 37 H 1.09002 * 109.69754 * 278.85560 * 7 6 5 38 38 H 1.09004 * 110.97932 * 156.46247 * 7 6 5 39 39 H 0.97005 * 119.99659 * 240.11849 * 9 8 7 40 40 H 0.96993 * 119.99546 * 0.02562 * 12 10 9 41 41 H 1.09001 * 109.47308 * 57.47855 * 13 12 10 42 42 H 1.09005 * 109.47635 * 297.47350 * 13 12 10 43 43 H 0.96997 * 119.99802 * 185.01827 * 18 17 15 44 44 H 1.08998 * 117.49722 * 215.00555 * 23 14 13 45 45 H 1.08994 * 117.50029 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49601 * 359.97438 * 24 14 13 47 47 H 1.08997 * 117.49959 * 144.99967 * 24 14 13 48 48 H 1.09005 * 110.85346 * 210.86252 * 25 8 7 49 49 H 1.08998 * 110.85639 * 334.49660 * 25 8 7 50 50 H 1.08993 * 110.61990 * 278.54874 * 26 25 8 51 51 H 1.08998 * 110.75741 * 155.60110 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0571 0.8198 1.2540 6 6 4.2853 2.0110 2.2167 7 6 4.7251 3.1451 1.2671 8 6 3.8704 2.9440 -0.0006 9 7 2.7306 3.8630 -0.0522 10 6 2.9384 5.1946 -0.0590 11 8 4.0718 5.6333 -0.0218 12 7 1.8898 6.0401 -0.1069 13 6 2.1157 7.4875 -0.1138 14 6 0.7739 8.2125 -0.2351 15 6 0.0330 7.9963 -1.5295 16 1 -0.7230 7.2280 -1.5972 17 6 0.3243 8.7757 -2.6289 18 7 1.3325 9.6193 -2.5886 19 14 -0.7131 8.6335 -4.1759 20 1 -2.1235 8.9730 -3.8590 21 1 -0.1971 9.5707 -5.2058 22 1 -0.6427 7.2431 -4.6930 23 6 -0.0598 8.3733 1.0377 24 6 0.6499 9.5853 0.4290 25 6 4.7802 3.0665 -1.2467 26 6 5.1893 1.5935 -1.5003 27 8 3.9947 0.8517 -1.1734 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 3.3707 0.0979 1.6966 34 1 5.0043 0.3410 1.0053 35 1 3.3590 2.2808 2.7241 36 1 5.0668 1.7788 2.9403 37 1 5.7843 3.0384 1.0332 38 1 4.5280 4.1221 1.7085 39 1 1.8264 3.5131 -0.0815 40 1 0.9857 5.6901 -0.1362 41 1 2.7495 7.7523 -0.9601 42 1 2.6059 7.7832 0.8139 43 1 1.4932 10.2190 -3.3337 44 1 -1.1441 8.3227 0.9388 45 1 0.3478 7.9629 1.9615 46 1 1.5243 9.9717 0.9529 47 1 0.0326 10.3320 -0.0703 48 1 4.2246 3.4664 -2.0950 49 1 5.6546 3.6802 -1.0301 50 1 6.0114 1.3052 -0.8454 51 1 5.4611 1.4425 -2.5450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894568197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -96.369140 kcal Electronic energy + Delta-G solvation = -31558.410320 eV Core-core repulsion = 27458.580660 eV Total energy + Delta-G solvation = -4099.829660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26291 -39.00828 -37.27999 -36.72694 -35.55705 -33.43714 -33.10986 -31.93665 -31.46296 -30.66582 -27.34618 -27.11844 -25.88097 -24.88240 -23.40778 -22.27109 -21.35433 -21.05979 -20.38156 -19.55196 -19.14010 -18.08918 -17.53899 -16.64860 -16.09273 -15.83645 -15.29657 -15.27462 -14.88420 -14.67051 -14.54971 -14.37447 -14.07668 -14.01166 -13.79249 -13.16531 -13.02505 -12.65183 -12.59018 -12.44498 -12.25810 -12.07547 -11.72544 -11.65664 -11.52734 -11.38078 -11.28483 -11.20243 -11.06355 -11.02218 -10.84596 -10.71731 -10.51881 -10.24533 -10.16441 -9.68013 -9.63821 -9.43682 -8.91660 -8.74335 -8.44095 -8.23341 -7.90969 -6.05143 -4.12805 3.01251 3.27988 3.30065 3.35783 3.37421 3.56963 3.81826 4.26278 4.27854 4.39345 4.75626 4.81535 4.82677 4.86952 4.87321 5.00490 5.07710 5.14667 5.21501 5.24137 5.28510 5.34079 5.40187 5.46481 5.56144 5.63135 5.70543 5.74033 5.77733 5.90235 5.93938 6.06323 6.07910 6.12703 6.19600 6.37217 6.50550 6.62367 6.64050 6.72016 6.76833 6.90010 7.06657 7.10835 7.39274 7.46830 7.52301 7.69443 7.84783 8.37509 8.75321 8.88048 9.28661 9.54166 11.03437 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003301 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.022649 B = 8479.369824 C = 8894.832067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.358 6.358 4 C 0.264 3.736 5 C -0.159 4.159 6 C -0.121 4.121 7 C -0.123 4.123 8 C 0.191 3.809 9 N -0.730 5.730 10 C 0.701 3.299 11 O -0.601 6.601 12 N -0.720 5.720 13 C 0.183 3.817 14 C 0.028 3.972 15 C -0.497 4.497 16 H 0.058 0.942 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.210 4.210 24 C -0.148 4.148 25 C -0.156 4.156 26 C 0.053 3.947 27 O -0.387 6.387 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.404 0.596 40 H 0.395 0.605 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.065 0.935 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -19.570 7.480 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.278 6.278 4 C 0.185 3.815 5 C -0.197 4.197 6 C -0.159 4.159 7 C -0.162 4.162 8 C 0.101 3.899 9 N -0.387 5.387 10 C 0.401 3.599 11 O -0.480 6.480 12 N -0.372 5.372 13 C 0.060 3.940 14 C 0.028 3.972 15 C -0.535 4.535 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.715 3.285 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 C -0.195 4.195 26 C -0.023 4.023 27 O -0.307 6.307 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.240 0.760 40 H 0.228 0.772 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.114 0.886 50 H 0.083 0.917 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.663 -19.036 7.253 21.143 hybrid contribution -1.210 -0.317 -0.949 1.570 sum 4.453 -19.353 6.304 20.835 Atomic orbital electron populations 1.21771 0.93473 1.02296 1.03419 1.22482 0.95316 0.83344 1.00696 1.87910 1.18312 1.27410 1.94129 1.23702 0.80620 0.91515 0.85640 1.23160 1.01915 0.98974 0.95643 1.22388 1.01998 0.94180 0.97324 1.22645 0.98946 1.00317 0.94259 1.21432 0.86772 0.85721 0.95929 1.44772 1.08965 1.03842 1.81131 1.15983 0.85447 0.80475 0.78037 1.90850 1.21524 1.76800 1.58859 1.45123 1.07412 1.07174 1.77455 1.20843 0.97794 0.76069 0.99325 1.19049 0.91908 0.95223 0.91056 1.20304 1.20299 1.19463 0.93408 0.92345 1.24951 0.94302 0.95619 0.98101 1.70002 1.26697 1.22025 1.32222 0.86738 0.80675 0.78001 0.83042 1.20280 1.21305 1.20249 1.23014 0.98435 1.05751 0.97571 1.22485 1.00756 0.92196 1.03199 1.23547 1.00966 0.96661 0.98319 1.23534 0.86967 0.90158 1.01641 1.88776 1.40751 1.54709 1.46511 0.91556 0.91096 0.91752 0.92390 0.93135 0.90143 0.89768 0.90953 0.90760 0.90578 0.89072 0.76030 0.77181 0.91015 0.95005 0.92886 0.90405 0.91656 0.91680 0.89877 0.89737 0.88571 0.91674 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.57 6.25 37.16 0.23 0.81 16 3 O -0.36 -4.50 8.54 -58.80 -0.50 -5.00 16 4 C 0.26 3.23 1.22 -25.20 -0.03 3.20 16 5 C -0.16 -1.54 5.99 -25.15 -0.15 -1.70 16 6 C -0.12 -1.21 6.88 -25.06 -0.17 -1.38 16 7 C -0.12 -1.55 5.50 -25.41 -0.14 -1.69 16 8 C 0.19 2.64 0.89 -129.32 -0.12 2.52 16 9 N -0.73 -11.58 5.19 -50.09 -0.26 -11.84 16 10 C 0.70 13.65 7.89 -86.92 -0.69 12.97 16 11 O -0.60 -13.32 14.40 5.28 0.08 -13.24 16 12 N -0.72 -14.49 5.47 -65.23 -0.36 -14.85 16 13 C 0.18 4.24 5.50 -4.05 -0.02 4.22 16 14 C 0.03 0.67 1.36 -155.66 -0.21 0.46 16 15 C -0.50 -12.94 8.68 -34.44 -0.30 -13.24 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.07 1.99 5.39 -17.82 -0.10 1.90 16 18 N -0.87 -24.48 12.94 55.43 0.72 -23.77 16 19 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 24 C -0.15 -3.39 9.45 -26.69 -0.25 -3.64 16 25 C -0.16 -2.13 5.27 -24.76 -0.13 -2.26 16 26 C 0.05 0.58 7.46 38.19 0.28 0.86 16 27 O -0.39 -4.92 10.36 -58.80 -0.61 -5.53 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.61 7.71 -51.92 -0.40 0.20 16 32 H 0.05 0.43 6.26 -51.93 -0.33 0.11 16 33 H 0.08 0.70 6.09 -51.93 -0.32 0.39 16 34 H 0.08 0.73 7.64 -51.93 -0.40 0.34 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.86 7.52 -51.93 -0.39 0.47 16 38 H 0.09 1.40 6.69 -51.93 -0.35 1.05 16 39 H 0.40 6.04 7.14 -40.82 -0.29 5.75 16 40 H 0.39 7.39 8.44 -40.82 -0.34 7.04 16 41 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 42 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.26 7.07 8.32 -40.82 -0.34 6.74 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 48 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 49 H 0.10 1.33 7.63 -51.93 -0.40 0.93 16 50 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 51 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -30.23 400.63 -10.25 -40.48 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -8.65 Total: 14.41 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.67 Total: -2.54 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.10 Total: -50.46 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.04 Total: -23.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.23 -10.25 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894568197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.893 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds