Wall clock time and date at job start Tue Mar 31 2020 21:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46500 * 109.46938 * 2 1
4 4 C 1.37096 * 119.99859 * 93.05310 * 3 2 1
5 5 H 1.08008 * 119.99738 * 225.26897 * 4 3 2
6 6 C 1.38940 * 120.00295 * 45.27214 * 4 3 2
7 7 N 1.31414 * 120.00009 * 356.01984 * 6 4 3
8 8 Si 1.86797 * 120.00193 * 176.02559 * 6 4 3
9 9 H 1.48503 * 109.47441 * 179.97438 * 8 6 4
10 10 H 1.48507 * 109.47051 * 299.99746 * 8 6 4
11 11 H 1.48496 * 109.47460 * 59.99746 * 8 6 4
12 12 C 1.34776 * 120.00031 * 273.05267 * 3 2 1
13 13 O 1.21294 * 120.00094 * 175.28703 * 12 3 2
14 14 C 1.50707 * 120.00024 * 355.28493 * 12 3 2
15 15 H 1.08994 * 110.55713 * 330.88082 * 14 12 3
16 16 C 1.54850 * 110.62658 * 207.98237 * 14 12 3
17 17 C 1.55849 * 103.44458 * 241.50995 * 16 14 12
18 18 H 1.08999 * 115.56203 * 201.18620 * 17 16 14
19 19 C 1.55849 * 105.06395 * 72.57236 * 17 16 14
20 20 C 1.54847 * 103.44942 * 288.17892 * 19 17 16
21 21 C 1.55845 * 110.62347 * 93.78121 * 14 12 3
22 22 H 1.08999 * 115.56059 * 278.04969 * 21 14 12
23 23 N 1.50240 * 101.04685 * 327.06300 * 17 16 14
24 24 C 1.34779 * 130.83430 * 233.96812 * 23 17 16
25 25 O 1.21513 * 119.99820 * 180.02562 * 24 23 17
26 26 O 1.34630 * 120.00313 * 0.02562 * 24 23 17
27 27 C 1.45201 * 117.00280 * 179.97438 * 26 24 23
28 28 C 1.52994 * 109.46958 * 60.00122 * 27 26 24
29 29 C 1.53001 * 109.47189 * 180.02562 * 27 26 24
30 30 C 1.53000 * 109.47144 * 300.00268 * 27 26 24
31 31 H 1.09002 * 109.46920 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46846 * 299.99778 * 1 2 3
33 33 H 1.08991 * 109.47569 * 59.99868 * 1 2 3
34 34 H 1.09000 * 109.46846 * 240.00222 * 2 1 3
35 35 H 1.08999 * 109.47339 * 120.00422 * 2 1 3
36 36 H 0.96998 * 120.00022 * 180.02562 * 7 6 4
37 37 H 1.09000 * 110.62501 * 359.97438 * 16 14 12
38 38 H 1.08995 * 110.63042 * 122.86564 * 16 14 12
39 39 H 1.09004 * 110.62002 * 46.66808 * 19 17 16
40 40 H 1.08999 * 110.62483 * 169.52745 * 19 17 16
41 41 H 1.09004 * 110.62681 * 118.48975 * 20 19 17
42 42 H 1.08994 * 110.62583 * 241.34832 * 20 19 17
43 43 H 1.09001 * 109.47281 * 60.00372 * 28 27 26
44 44 H 1.09003 * 109.47543 * 179.97438 * 28 27 26
45 45 H 1.08996 * 109.47618 * 300.00411 * 28 27 26
46 46 H 1.09001 * 109.47409 * 60.00031 * 29 27 26
47 47 H 1.09003 * 109.47027 * 180.02562 * 29 27 26
48 48 H 1.09001 * 109.46921 * 299.99548 * 29 27 26
49 49 H 1.09003 * 109.47046 * 60.00177 * 30 27 26
50 50 H 1.09000 * 109.47436 * 179.97438 * 30 27 26
51 51 H 1.08997 * 109.47169 * 300.00365 * 30 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3064 2.0064 1.1856
5 1 1.9677 3.0172 1.3593
6 6 3.0340 1.3398 2.1637
7 7 3.3788 0.0844 1.9849
8 14 3.5220 2.2280 3.7328
9 1 4.2863 1.3032 4.6080
10 1 4.3666 3.4019 3.3950
11 1 2.3008 2.6850 4.4433
12 6 2.1843 2.0373 -1.1655
13 8 2.5062 3.2067 -1.1627
14 6 1.9700 1.3179 -2.4724
15 1 2.1944 0.2566 -2.3663
16 6 2.8351 1.9492 -3.5908
17 6 1.7816 2.4529 -4.6230
18 1 2.1518 2.6048 -5.6369
19 6 1.1222 3.6967 -3.9545
20 6 0.2565 3.0830 -2.8268
21 6 0.5104 1.5226 -2.9787
22 1 -0.2375 0.8646 -2.5363
23 7 0.7063 1.4154 -4.4665
24 6 0.1023 0.6278 -5.3783
25 8 -0.7582 -0.1559 -5.0293
26 8 0.4522 0.7094 -6.6758
27 6 -0.2398 -0.1693 -7.6017
28 6 -1.7402 0.1270 -7.5613
29 6 0.2888 0.0646 -9.0184
30 6 0.0035 -1.6257 -7.2011
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 3.8865 -0.3811 2.6679
37 1 3.4188 2.7829 -3.2004
38 1 3.4884 1.2009 -4.0395
39 1 1.8828 4.3573 -3.5383
40 1 0.4999 4.2330 -4.6709
41 1 0.5878 3.4392 -1.8513
42 1 -0.7970 3.3156 -2.9817
43 1 -1.9135 1.1646 -7.8467
44 1 -2.2597 -0.5323 -8.2567
45 1 -2.1165 -0.0398 -6.5520
46 1 1.3577 -0.1468 -9.0469
47 1 -0.2310 -0.5948 -9.7135
48 1 0.1157 1.1022 -9.3040
49 1 -0.3728 -1.7926 -6.1918
50 1 -0.5163 -2.2854 -7.8959
51 1 1.0724 -1.8368 -7.2299
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930618655.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:00:56
Heat of formation + Delta-G solvation = -80.877121 kcal
Electronic energy + Delta-G solvation = -32068.048908 eV
Core-core repulsion = 27968.891033 eV
Total energy + Delta-G solvation = -4099.157875 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.03408 -40.02489 -37.85472 -36.49914 -34.96651 -34.07787 -32.12972 -31.04290
-30.28696 -29.53155 -29.14519 -27.54366 -27.47363 -25.34491 -23.76459 -22.44937
-21.98782 -21.18117 -20.13523 -19.16276 -18.33036 -17.62609 -16.86050 -16.44037
-16.33309 -16.10783 -15.37828 -15.13970 -14.80656 -14.32530 -14.11570 -13.87354
-13.84546 -13.27948 -12.94133 -12.82900 -12.66750 -12.56671 -12.37852 -12.19318
-12.08371 -11.99945 -11.88218 -11.84019 -11.63246 -11.47882 -11.44216 -11.32283
-11.19740 -11.05917 -10.85934 -10.70374 -10.56205 -10.39400 -10.33511 -10.29942
-9.98675 -9.90307 -9.68746 -8.88854 -8.71831 -8.40286 -7.41377 -6.25315
-4.10485 2.10844 2.98825 3.19993 3.24947 3.28503 3.78693 3.84342
4.15011 4.60714 4.63691 4.69077 4.78202 4.79749 4.89008 4.96088
5.07260 5.24163 5.29422 5.31518 5.39483 5.39779 5.47515 5.54191
5.59049 5.60920 5.62244 5.74667 5.75516 5.80933 5.85955 5.91981
6.15865 6.19237 6.20197 6.22983 6.27273 6.30819 6.33902 6.41593
6.44204 6.54472 6.57850 6.66109 6.71935 6.98889 7.37934 7.64986
7.79198 8.32003 8.47836 8.52910 9.15449 9.37189 9.97518 10.71765
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.022357 B = 0.003109 C = 0.002945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.113532 B = 9004.639623 C = 9505.598747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.083 3.917
3 N -0.438 5.438
4 C -0.303 4.303
5 H 0.087 0.913
6 C 0.039 3.961
7 N -0.882 5.882
8 Si 0.924 3.076
9 H -0.285 1.285
10 H -0.272 1.272
11 H -0.274 1.274
12 C 0.480 3.520
13 O -0.573 6.573
14 C -0.123 4.123
15 H 0.091 0.909
16 C -0.116 4.116
17 C 0.127 3.873
18 H 0.115 0.885
19 C -0.122 4.122
20 C -0.140 4.140
21 C 0.162 3.838
22 H 0.126 0.874
23 N -0.615 5.615
24 C 0.676 3.324
25 O -0.575 6.575
26 O -0.364 6.364
27 C 0.135 3.865
28 C -0.182 4.182
29 C -0.139 4.139
30 C -0.183 4.183
31 H 0.049 0.951
32 H 0.056 0.944
33 H 0.040 0.960
34 H 0.044 0.956
35 H 0.130 0.870
36 H 0.269 0.731
37 H 0.099 0.901
38 H 0.066 0.934
39 H 0.090 0.910
40 H 0.060 0.940
41 H 0.108 0.892
42 H 0.060 0.940
43 H 0.057 0.943
44 H 0.067 0.933
45 H 0.088 0.912
46 H 0.066 0.934
47 H 0.078 0.922
48 H 0.065 0.935
49 H 0.089 0.911
50 H 0.067 0.933
51 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.561 -1.166 -16.850 17.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.041 4.041
3 N -0.156 5.156
4 C -0.431 4.431
5 H 0.104 0.896
6 C -0.163 4.163
7 N -0.521 5.521
8 Si 0.750 3.250
9 H -0.210 1.210
10 H -0.197 1.197
11 H -0.199 1.199
12 C 0.267 3.733
13 O -0.457 6.457
14 C -0.146 4.146
15 H 0.109 0.891
16 C -0.154 4.154
17 C 0.024 3.976
18 H 0.133 0.867
19 C -0.160 4.160
20 C -0.178 4.178
21 C 0.061 3.939
22 H 0.144 0.856
23 N -0.356 5.356
24 C 0.432 3.568
25 O -0.466 6.466
26 O -0.279 6.279
27 C 0.099 3.901
28 C -0.240 4.240
29 C -0.196 4.196
30 C -0.240 4.240
31 H 0.068 0.932
32 H 0.075 0.925
33 H 0.059 0.941
34 H 0.062 0.938
35 H 0.148 0.852
36 H 0.079 0.921
37 H 0.117 0.883
38 H 0.085 0.915
39 H 0.108 0.892
40 H 0.079 0.921
41 H 0.126 0.874
42 H 0.079 0.921
43 H 0.077 0.923
44 H 0.086 0.914
45 H 0.107 0.893
46 H 0.085 0.915
47 H 0.097 0.903
48 H 0.084 0.916
49 H 0.107 0.893
50 H 0.086 0.914
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -5.651 -1.125 -16.785 17.746
hybrid contribution 0.171 -0.032 0.644 0.667
sum -5.480 -1.157 -16.141 17.085
Atomic orbital electron populations
1.22314 0.98464 1.00371 1.01229 1.21957 0.91563 0.85804 1.04783
1.43430 1.55939 1.11917 1.04321 1.19326 1.32321 0.99800 0.91690
0.89570 1.25519 0.95086 0.95685 1.00052 1.69532 1.37709 1.09322
1.35493 0.86054 0.78947 0.79237 0.80733 1.21001 1.19732 1.19930
1.19888 0.81137 0.87808 0.84490 1.90481 1.51781 1.16497 1.86905
1.22697 0.95351 1.01497 0.95053 0.89135 1.22898 0.96674 1.01554
0.94290 1.23733 0.87334 0.87325 0.99191 0.86679 1.22821 0.99678
0.96445 0.97081 1.23658 0.99306 0.93059 1.01816 1.24287 0.96520
0.97474 0.75637 0.85620 1.49387 1.40109 1.38787 1.07280 1.17348
0.79860 0.79618 0.80016 1.90876 1.34651 1.40477 1.80557 1.86298
1.63342 1.61766 1.16513 1.22011 0.91911 0.88926 0.87302 1.22508
0.94514 1.01851 1.05094 1.21843 1.02141 1.02927 0.92731 1.22515
1.02339 0.94439 1.04751 0.93184 0.92486 0.94091 0.93754 0.85236
0.92059 0.88258 0.91519 0.89167 0.92096 0.87408 0.92123 0.92343
0.91374 0.89291 0.91522 0.90320 0.91597 0.89253 0.91375 0.92224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.08 10.22 37.16 0.38 -2.70 16
2 C 0.08 1.79 5.52 -4.04 -0.02 1.77 16
3 N -0.44 -10.58 2.53 -114.81 -0.29 -10.87 16
4 C -0.30 -8.05 8.85 -14.94 -0.13 -8.18 16
5 H 0.09 2.36 7.79 -52.48 -0.41 1.95 16
6 C 0.04 1.02 5.38 -17.47 -0.09 0.92 16
7 N -0.88 -23.02 10.74 55.50 0.60 -22.42 16
8 Si 0.92 20.42 29.55 -169.99 -5.02 15.40 16
9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16
10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
12 C 0.48 10.80 5.59 -10.98 -0.06 10.73 16
13 O -0.57 -14.11 13.63 5.55 0.08 -14.04 16
14 C -0.12 -2.26 2.64 -89.27 -0.24 -2.50 16
15 H 0.09 1.69 6.01 -51.93 -0.31 1.38 16
16 C -0.12 -1.85 5.95 -24.23 -0.14 -1.99 16
17 C 0.13 1.80 5.28 -62.80 -0.33 1.47 16
18 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16
19 C -0.12 -1.76 6.29 -24.24 -0.15 -1.91 16
20 C -0.14 -2.30 6.12 -22.53 -0.14 -2.44 16
21 C 0.16 2.74 4.66 -60.97 -0.28 2.46 16
22 H 0.13 2.18 5.82 -51.93 -0.30 1.88 16
23 N -0.61 -9.80 2.92 -149.89 -0.44 -10.24 16
24 C 0.68 11.07 8.13 54.06 0.44 11.51 16
25 O -0.58 -10.39 12.48 -19.28 -0.24 -10.63 16
26 O -0.36 -5.20 9.76 -40.30 -0.39 -5.59 16
27 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16
28 C -0.18 -2.02 8.37 37.15 0.31 -1.71 16
29 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16
30 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16
31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
33 H 0.04 0.72 5.10 -51.93 -0.26 0.45 16
34 H 0.04 0.90 5.86 -51.93 -0.30 0.60 16
35 H 0.13 3.14 5.19 -51.93 -0.27 2.87 16
36 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16
37 H 0.10 1.72 6.56 -51.93 -0.34 1.38 16
38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
39 H 0.09 1.36 7.77 -51.93 -0.40 0.95 16
40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.11 2.08 5.23 -51.93 -0.27 1.81 16
42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
45 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16
46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
49 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16
50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
51 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
LS Contribution 385.54 15.07 5.81 5.81
Total: -1.00 -29.36 385.54 -7.95 -37.31
By element:
Atomic # 1 Polarization: 17.13 SS G_CDS: -8.12 Total: 9.01 kcal
Atomic # 6 Polarization: 6.20 SS G_CDS: 0.07 Total: 6.28 kcal
Atomic # 7 Polarization: -43.41 SS G_CDS: -0.13 Total: -43.54 kcal
Atomic # 8 Polarization: -29.70 SS G_CDS: -0.56 Total: -30.26 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -29.36 -7.95 -37.31 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930618655.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.567 kcal
(2) G-P(sol) polarization free energy of solvation -29.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds