Wall clock time and date at job start Tue Mar 31 2020 21:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46500 * 109.46938 * 2 1
4 4 C 1.37096 * 119.99859 * 93.05310 * 3 2 1
5 5 H 1.08008 * 119.99738 * 225.26897 * 4 3 2
6 6 C 1.38940 * 120.00295 * 45.27214 * 4 3 2
7 7 N 1.31414 * 120.00009 * 356.01984 * 6 4 3
8 8 Si 1.86797 * 120.00193 * 176.02559 * 6 4 3
9 9 H 1.48503 * 109.47441 * 179.97438 * 8 6 4
10 10 H 1.48507 * 109.47051 * 299.99746 * 8 6 4
11 11 H 1.48496 * 109.47460 * 59.99746 * 8 6 4
12 12 C 1.34776 * 120.00031 * 273.05267 * 3 2 1
13 13 O 1.21294 * 120.00094 * 175.28703 * 12 3 2
14 14 C 1.50707 * 120.00024 * 355.28493 * 12 3 2
15 15 H 1.08994 * 110.55713 * 330.88082 * 14 12 3
16 16 C 1.54850 * 110.62658 * 207.98237 * 14 12 3
17 17 C 1.55849 * 103.44458 * 241.50995 * 16 14 12
18 18 H 1.08999 * 115.56203 * 201.18620 * 17 16 14
19 19 C 1.55849 * 105.06395 * 72.57236 * 17 16 14
20 20 C 1.54847 * 103.44942 * 288.17892 * 19 17 16
21 21 C 1.55845 * 110.62347 * 93.78121 * 14 12 3
22 22 H 1.08999 * 115.56059 * 278.04969 * 21 14 12
23 23 N 1.50240 * 101.04685 * 327.06300 * 17 16 14
24 24 C 1.34779 * 130.83430 * 233.96812 * 23 17 16
25 25 O 1.21513 * 119.99820 * 180.02562 * 24 23 17
26 26 O 1.34630 * 120.00313 * 0.02562 * 24 23 17
27 27 C 1.45201 * 117.00280 * 179.97438 * 26 24 23
28 28 C 1.52994 * 109.46958 * 60.00122 * 27 26 24
29 29 C 1.53001 * 109.47189 * 180.02562 * 27 26 24
30 30 C 1.53000 * 109.47144 * 300.00268 * 27 26 24
31 31 H 1.09002 * 109.46920 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46846 * 299.99778 * 1 2 3
33 33 H 1.08991 * 109.47569 * 59.99868 * 1 2 3
34 34 H 1.09000 * 109.46846 * 240.00222 * 2 1 3
35 35 H 1.08999 * 109.47339 * 120.00422 * 2 1 3
36 36 H 0.96998 * 120.00022 * 180.02562 * 7 6 4
37 37 H 1.09000 * 110.62501 * 359.97438 * 16 14 12
38 38 H 1.08995 * 110.63042 * 122.86564 * 16 14 12
39 39 H 1.09004 * 110.62002 * 46.66808 * 19 17 16
40 40 H 1.08999 * 110.62483 * 169.52745 * 19 17 16
41 41 H 1.09004 * 110.62681 * 118.48975 * 20 19 17
42 42 H 1.08994 * 110.62583 * 241.34832 * 20 19 17
43 43 H 1.09001 * 109.47281 * 60.00372 * 28 27 26
44 44 H 1.09003 * 109.47543 * 179.97438 * 28 27 26
45 45 H 1.08996 * 109.47618 * 300.00411 * 28 27 26
46 46 H 1.09001 * 109.47409 * 60.00031 * 29 27 26
47 47 H 1.09003 * 109.47027 * 180.02562 * 29 27 26
48 48 H 1.09001 * 109.46921 * 299.99548 * 29 27 26
49 49 H 1.09003 * 109.47046 * 60.00177 * 30 27 26
50 50 H 1.09000 * 109.47436 * 179.97438 * 30 27 26
51 51 H 1.08997 * 109.47169 * 300.00365 * 30 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3064 2.0064 1.1856
5 1 1.9677 3.0172 1.3593
6 6 3.0340 1.3398 2.1637
7 7 3.3788 0.0844 1.9849
8 14 3.5220 2.2280 3.7328
9 1 4.2863 1.3032 4.6080
10 1 4.3666 3.4019 3.3950
11 1 2.3008 2.6850 4.4433
12 6 2.1843 2.0373 -1.1655
13 8 2.5062 3.2067 -1.1627
14 6 1.9700 1.3179 -2.4724
15 1 2.1944 0.2566 -2.3663
16 6 2.8351 1.9492 -3.5908
17 6 1.7816 2.4529 -4.6230
18 1 2.1518 2.6048 -5.6369
19 6 1.1222 3.6967 -3.9545
20 6 0.2565 3.0830 -2.8268
21 6 0.5104 1.5226 -2.9787
22 1 -0.2375 0.8646 -2.5363
23 7 0.7063 1.4154 -4.4665
24 6 0.1023 0.6278 -5.3783
25 8 -0.7582 -0.1559 -5.0293
26 8 0.4522 0.7094 -6.6758
27 6 -0.2398 -0.1693 -7.6017
28 6 -1.7402 0.1270 -7.5613
29 6 0.2888 0.0646 -9.0184
30 6 0.0035 -1.6257 -7.2011
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 3.8865 -0.3811 2.6679
37 1 3.4188 2.7829 -3.2004
38 1 3.4884 1.2009 -4.0395
39 1 1.8828 4.3573 -3.5383
40 1 0.4999 4.2330 -4.6709
41 1 0.5878 3.4392 -1.8513
42 1 -0.7970 3.3156 -2.9817
43 1 -1.9135 1.1646 -7.8467
44 1 -2.2597 -0.5323 -8.2567
45 1 -2.1165 -0.0398 -6.5520
46 1 1.3577 -0.1468 -9.0469
47 1 -0.2310 -0.5948 -9.7135
48 1 0.1157 1.1022 -9.3040
49 1 -0.3728 -1.7926 -6.1918
50 1 -0.5163 -2.2854 -7.8959
51 1 1.0724 -1.8368 -7.2299
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930618655.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:00:56
Heat of formation + Delta-G solvation = -96.262728 kcal
Electronic energy + Delta-G solvation = -32068.716078 eV
Core-core repulsion = 27968.891033 eV
Total energy + Delta-G solvation = -4099.825045 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.35977 -41.27434 -39.46933 -37.68827 -36.80099 -35.06586 -34.02070 -32.34163
-31.66958 -31.21150 -30.52029 -28.33433 -28.25633 -27.18141 -25.09514 -24.04038
-23.53365 -22.24948 -21.57333 -20.31113 -19.84529 -18.94783 -18.62663 -18.05229
-17.49367 -17.34271 -17.02342 -16.45656 -16.17297 -15.85187 -15.43507 -15.30583
-14.79760 -14.69093 -14.47280 -14.36986 -13.99016 -13.66808 -13.58098 -13.43393
-13.30903 -13.14148 -13.05120 -12.98317 -12.86698 -12.83039 -12.77804 -12.63282
-12.54431 -12.45373 -12.33360 -12.24756 -12.08896 -12.04653 -11.74195 -11.60074
-11.36253 -11.07946 -11.05927 -10.79100 -10.28735 -9.96514 -9.32109 -8.20477
-6.13566 0.93539 1.41665 1.43426 1.51981 1.73474 2.06204 2.31001
2.72111 3.03732 3.13822 3.45855 3.54186 3.65087 3.79220 3.83760
3.90951 3.98125 4.03219 4.09381 4.19318 4.25926 4.26745 4.35445
4.44989 4.61217 4.64353 4.66282 4.68562 4.79332 4.80601 4.84070
4.88341 4.91169 4.99232 5.00312 5.05921 5.06599 5.14620 5.15927
5.22473 5.31597 5.34486 5.36958 5.40707 5.46437 5.49123 5.73343
6.33216 6.55765 6.62831 7.21147 7.25891 7.50655 8.10347 8.73920
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.022357 B = 0.003109 C = 0.002945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.113532 B = 9004.639623 C = 9505.598747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.085 3.915
3 N -0.454 5.454
4 C -0.330 4.330
5 H 0.066 0.934
6 C 0.003 3.997
7 N -0.898 5.898
8 Si 0.982 3.018
9 H -0.274 1.274
10 H -0.278 1.278
11 H -0.266 1.266
12 C 0.478 3.522
13 O -0.600 6.600
14 C -0.117 4.117
15 H 0.086 0.914
16 C -0.114 4.114
17 C 0.139 3.861
18 H 0.147 0.853
19 C -0.117 4.117
20 C -0.139 4.139
21 C 0.164 3.836
22 H 0.120 0.880
23 N -0.615 5.615
24 C 0.674 3.326
25 O -0.596 6.596
26 O -0.364 6.364
27 C 0.122 3.878
28 C -0.179 4.179
29 C -0.133 4.133
30 C -0.180 4.180
31 H 0.075 0.925
32 H 0.042 0.958
33 H 0.049 0.951
34 H 0.054 0.946
35 H 0.107 0.893
36 H 0.272 0.728
37 H 0.085 0.915
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.084 0.916
41 H 0.075 0.925
42 H 0.072 0.928
43 H 0.062 0.938
44 H 0.092 0.908
45 H 0.058 0.942
46 H 0.068 0.932
47 H 0.103 0.897
48 H 0.070 0.930
49 H 0.057 0.943
50 H 0.093 0.907
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.833 -1.460 -19.319 20.233
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.038 4.038
3 N -0.173 5.173
4 C -0.459 4.459
5 H 0.084 0.916
6 C -0.198 4.198
7 N -0.537 5.537
8 Si 0.806 3.194
9 H -0.199 1.199
10 H -0.204 1.204
11 H -0.191 1.191
12 C 0.266 3.734
13 O -0.485 6.485
14 C -0.140 4.140
15 H 0.104 0.896
16 C -0.152 4.152
17 C 0.037 3.963
18 H 0.164 0.836
19 C -0.155 4.155
20 C -0.177 4.177
21 C 0.063 3.937
22 H 0.138 0.862
23 N -0.356 5.356
24 C 0.431 3.569
25 O -0.488 6.488
26 O -0.278 6.278
27 C 0.086 3.914
28 C -0.236 4.236
29 C -0.190 4.190
30 C -0.237 4.237
31 H 0.093 0.907
32 H 0.062 0.938
33 H 0.068 0.932
34 H 0.072 0.928
35 H 0.125 0.875
36 H 0.082 0.918
37 H 0.104 0.896
38 H 0.101 0.899
39 H 0.100 0.900
40 H 0.103 0.897
41 H 0.094 0.906
42 H 0.091 0.909
43 H 0.081 0.919
44 H 0.111 0.889
45 H 0.077 0.923
46 H 0.087 0.913
47 H 0.122 0.878
48 H 0.089 0.911
49 H 0.076 0.924
50 H 0.112 0.888
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -5.929 -1.434 -19.280 20.222
hybrid contribution 0.230 0.023 1.353 1.373
sum -5.699 -1.410 -17.927 18.864
Atomic orbital electron populations
1.22199 0.96243 1.01925 1.00950 1.21916 0.93380 0.84518 1.04024
1.43643 1.56648 1.12724 1.04300 1.19330 1.33628 0.99493 0.93404
0.91591 1.26193 0.94725 0.96310 1.02593 1.69654 1.37710 1.09977
1.36328 0.85171 0.78688 0.77986 0.77543 1.19887 1.20409 1.19121
1.20467 0.79914 0.87537 0.85441 1.90452 1.52701 1.17784 1.87571
1.22587 0.97213 1.00663 0.93535 0.89559 1.22901 0.96977 1.01389
0.93983 1.23850 0.85985 0.86327 1.00094 0.83555 1.22794 0.99439
0.96513 0.96722 1.23554 1.00371 0.92760 1.01016 1.24106 0.95193
0.97745 0.76697 0.86215 1.49321 1.40476 1.39156 1.06626 1.17446
0.79541 0.79188 0.80726 1.90879 1.35547 1.41239 1.81118 1.86312
1.63600 1.62416 1.15515 1.22462 0.92217 0.88489 0.88206 1.22462
0.94483 1.02759 1.03869 1.21869 1.02509 1.03952 0.90661 1.22477
1.02540 0.95144 1.03578 0.90654 0.93841 0.93243 0.92761 0.87549
0.91830 0.89632 0.89919 0.90005 0.89733 0.90632 0.90948 0.91933
0.88886 0.92344 0.91253 0.87803 0.91085 0.92364 0.88847 0.92131
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.81 10.22 71.98 0.74 -5.08 16
2 C 0.08 3.76 5.52 86.38 0.48 4.23 16
3 N -0.45 -22.70 2.53 -635.53 -1.61 -24.31 16
4 C -0.33 -18.18 8.85 84.04 0.74 -17.43 16
5 H 0.07 3.80 7.79 -2.91 -0.02 3.78 16
6 C 0.00 0.15 5.38 84.92 0.46 0.61 16
7 N -0.90 -47.64 10.74 21.66 0.23 -47.40 16
8 Si 0.98 42.46 29.55 68.60 2.03 44.49 16
9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
12 C 0.48 22.15 5.59 87.66 0.49 22.64 16
13 O -0.60 -30.63 13.63 -3.07 -0.04 -30.67 16
14 C -0.12 -4.32 2.64 -9.92 -0.03 -4.35 16
15 H 0.09 3.23 6.01 -2.39 -0.01 3.22 16
16 C -0.11 -3.54 5.95 32.21 0.19 -3.35 16
17 C 0.14 3.66 5.28 46.23 0.24 3.90 16
18 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16
19 C -0.12 -3.19 6.29 32.21 0.20 -2.99 16
20 C -0.14 -4.53 6.12 33.32 0.20 -4.33 16
21 C 0.16 5.53 4.66 47.29 0.22 5.75 16
22 H 0.12 4.16 5.82 -2.39 -0.01 4.15 16
23 N -0.62 -18.70 2.92 -858.54 -2.51 -21.21 16
24 C 0.67 21.14 8.13 129.79 1.06 22.20 16
25 O -0.60 -21.25 12.48 19.80 0.25 -21.00 16
26 O -0.36 -9.56 9.76 -55.39 -0.54 -10.10 16
27 C 0.12 2.50 1.13 -10.80 -0.01 2.48 16
28 C -0.18 -3.57 8.37 71.98 0.60 -2.96 16
29 C -0.13 -1.72 8.85 71.98 0.64 -1.09 16
30 C -0.18 -3.74 8.37 71.98 0.60 -3.13 16
31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
33 H 0.05 1.75 5.10 -2.39 -0.01 1.74 16
34 H 0.05 2.24 5.86 -2.39 -0.01 2.23 16
35 H 0.11 5.29 5.19 -2.39 -0.01 5.27 16
36 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16
37 H 0.09 2.95 6.56 -2.39 -0.02 2.93 16
38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
39 H 0.08 2.41 7.77 -2.38 -0.02 2.39 16
40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
41 H 0.08 3.01 5.23 -2.38 -0.01 3.00 16
42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
43 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16
44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16
46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
49 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16
50 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
51 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -65.51 385.54 5.57 -59.94
By element:
Atomic # 1 Polarization: 32.23 SS G_CDS: 0.93 Total: 33.16 kcal
Atomic # 6 Polarization: 10.28 SS G_CDS: 6.83 Total: 17.10 kcal
Atomic # 7 Polarization: -89.04 SS G_CDS: -3.89 Total: -92.93 kcal
Atomic # 8 Polarization: -61.43 SS G_CDS: -0.34 Total: -61.77 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal
Total: -65.51 5.57 -59.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930618655.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.318 kcal
(2) G-P(sol) polarization free energy of solvation -65.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds