Wall clock time and date at job start Tue Mar 31 2020 20:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47082 * 2 1 4 4 C 1.34230 * 116.99985 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99974 * 180.02562 * 4 3 2 7 7 H 1.09002 * 115.58977 * 272.24891 * 6 4 3 8 8 C 1.52361 * 117.52364 * 126.42248 * 6 4 3 9 9 H 1.09002 * 115.61442 * 145.28072 * 8 6 4 10 10 C 1.52378 * 119.51431 * 1.23305 * 8 6 4 11 11 C 1.52986 * 109.97203 * 310.39269 * 10 8 6 12 12 N 1.47167 * 108.60577 * 305.51368 * 11 10 8 13 13 C 1.46897 * 111.00339 * 199.59340 * 12 11 10 14 14 C 1.50701 * 109.47261 * 170.58877 * 13 12 11 15 15 O 1.21281 * 119.99638 * 353.93385 * 14 13 12 16 16 N 1.34771 * 119.99907 * 173.93693 * 14 13 12 17 17 C 1.46498 * 120.00191 * 359.97438 * 16 14 13 18 18 C 1.53002 * 109.47159 * 90.00348 * 17 16 14 19 19 C 1.46499 * 120.00082 * 179.97438 * 16 14 13 20 20 C 1.50697 * 109.47422 * 89.99560 * 19 16 14 21 21 H 1.08001 * 120.00112 * 0.02562 * 20 19 16 22 22 C 1.37874 * 120.00100 * 179.97438 * 20 19 16 23 23 N 1.31512 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47209 * 90.00434 * 24 22 20 26 26 H 1.48499 * 109.47700 * 210.00254 * 24 22 20 27 27 H 1.48503 * 109.47323 * 330.00239 * 24 22 20 28 28 C 1.46750 * 110.31825 * 76.12089 * 12 11 10 29 29 C 1.52412 * 60.52898 * 252.58220 * 8 6 4 30 30 H 1.09006 * 117.37989 * 253.23449 * 29 8 6 31 31 H 1.08996 * 109.46638 * 299.99851 * 1 2 3 32 32 H 1.09000 * 109.47020 * 59.99950 * 1 2 3 33 33 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47519 * 240.00137 * 2 1 3 35 35 H 1.09000 * 109.47020 * 120.00050 * 2 1 3 36 36 H 1.09003 * 109.38625 * 70.54115 * 10 8 6 37 37 H 1.08997 * 109.39258 * 190.34180 * 10 8 6 38 38 H 1.09000 * 109.61203 * 185.78290 * 11 10 8 39 39 H 1.08993 * 109.61753 * 65.25105 * 11 10 8 40 40 H 1.09000 * 109.47244 * 50.58462 * 13 12 11 41 41 H 1.09004 * 109.46656 * 290.58679 * 13 12 11 42 42 H 1.08999 * 109.47464 * 210.00530 * 17 16 14 43 43 H 1.09002 * 109.47230 * 330.00783 * 17 16 14 44 44 H 1.08999 * 109.47125 * 180.02562 * 18 17 16 45 45 H 1.09007 * 109.46850 * 300.00168 * 18 17 16 46 46 H 1.08995 * 109.47284 * 59.99835 * 18 17 16 47 47 H 1.09000 * 109.47329 * 210.00257 * 19 16 14 48 48 H 1.09008 * 109.47055 * 329.99443 * 19 16 14 49 49 H 0.96998 * 120.00529 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.36512 * 64.20951 * 28 12 11 51 51 H 1.09006 * 109.35810 * 183.93898 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 1 4.0654 3.3875 -0.9810 8 6 4.9308 3.2811 1.0889 9 1 5.7287 3.9622 0.7928 10 6 5.3362 2.2161 2.1004 11 6 4.0895 1.5554 2.6917 12 7 3.2175 2.6057 3.2415 13 6 2.2645 2.0457 4.2090 14 6 1.5505 3.1677 4.9178 15 8 1.8859 4.3172 4.7253 16 7 0.5394 2.8937 5.7657 17 6 0.1340 1.5052 5.9979 18 6 0.9324 0.9299 7.1695 19 6 -0.1543 3.9843 6.4553 20 6 -1.3176 4.4489 5.6175 21 1 -1.5202 3.9786 4.6666 22 6 -2.1238 5.4738 6.0653 23 7 -1.8775 6.0462 7.2234 24 14 -3.5653 6.0502 5.0265 25 1 -4.7777 5.2720 5.3868 26 1 -3.8107 7.4931 5.2773 27 1 -3.2537 5.8437 3.5893 28 6 2.5173 3.3055 2.1582 29 6 3.5260 3.8683 1.1574 30 1 3.4131 4.9268 0.9228 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 5.9459 1.4602 1.6052 37 1 5.9131 2.6785 2.9013 38 1 4.3813 0.8689 3.4864 39 1 3.5587 1.0109 1.9108 40 1 2.8012 1.4386 4.9380 41 1 1.5369 1.4258 3.6850 42 1 -0.9300 1.4715 6.2320 43 1 0.3277 0.9154 5.1019 44 1 0.6311 -0.1034 7.3420 45 1 1.9965 0.9635 6.9353 46 1 0.7389 1.5196 8.0655 47 1 -0.5193 3.6306 7.4195 48 1 0.5360 4.8135 6.6102 49 1 -2.4445 6.7675 7.5383 50 1 1.8525 2.6086 1.6481 51 1 1.9311 4.1239 2.5764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932063605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:10 Heat of formation + Delta-G solvation = -77.936836 kcal Electronic energy + Delta-G solvation = -31680.379612 eV Core-core repulsion = 27581.349237 eV Total energy + Delta-G solvation = -4099.030375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51411 -39.43516 -38.54604 -36.72941 -35.47659 -34.89482 -32.77984 -31.97172 -31.22540 -30.07035 -28.70221 -26.84037 -25.95144 -24.28796 -23.29796 -22.97332 -22.63371 -21.98865 -20.36620 -18.94215 -18.27066 -17.59505 -17.11227 -16.70803 -16.44203 -16.21429 -15.83161 -15.51114 -14.96417 -14.72660 -14.35997 -14.15848 -13.87484 -13.79243 -13.59068 -13.32630 -13.20581 -12.99300 -12.74895 -12.62497 -12.25341 -12.19933 -12.07570 -11.93780 -11.75578 -11.71976 -11.38188 -11.24048 -11.16963 -10.89959 -10.84359 -10.71047 -10.69038 -10.51551 -10.50263 -10.14212 -10.05128 -9.93837 -9.60365 -8.82762 -8.42063 -8.05620 -7.60756 -6.02610 -4.07225 2.01684 2.41414 3.30040 3.36902 3.38852 3.40585 3.49667 3.70173 4.18886 4.40807 4.45726 4.48821 4.63473 4.67773 4.73452 4.79114 4.92643 5.00675 5.06405 5.18399 5.25289 5.28149 5.32290 5.40376 5.45564 5.46818 5.54810 5.55439 5.62508 5.66260 5.72568 5.79931 5.80364 5.83640 5.95571 6.03610 6.06433 6.09936 6.23556 6.27752 6.33726 6.48815 6.97795 7.14737 7.19919 7.48946 7.59784 7.59892 7.94398 8.26100 8.48176 8.93150 9.18021 9.57996 11.05386 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.003536 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.450264 B = 7917.448304 C = 8282.556025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.351 6.351 4 C 0.505 3.495 5 O -0.506 6.506 6 C -0.183 4.183 7 H 0.142 0.858 8 C -0.094 4.094 9 H 0.116 0.884 10 C -0.084 4.084 11 C 0.035 3.965 12 N -0.510 5.510 13 C 0.037 3.963 14 C 0.507 3.493 15 O -0.521 6.521 16 N -0.600 5.600 17 C 0.107 3.893 18 C -0.169 4.169 19 C 0.248 3.752 20 C -0.524 4.524 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.061 3.939 29 C -0.106 4.106 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.030 0.970 48 H 0.043 0.957 49 H 0.263 0.737 50 H 0.052 0.948 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -13.408 -12.496 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.268 6.268 4 C 0.349 3.651 5 O -0.395 6.395 6 C -0.202 4.202 7 H 0.160 0.840 8 C -0.113 4.113 9 H 0.134 0.866 10 C -0.122 4.122 11 C -0.093 4.093 12 N -0.234 5.234 13 C -0.094 4.094 14 C 0.292 3.708 15 O -0.397 6.397 16 N -0.333 5.333 17 C -0.018 4.018 18 C -0.227 4.227 19 C 0.129 3.871 20 C -0.563 4.563 21 H 0.074 0.926 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.066 4.066 29 C -0.124 4.124 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.481 -12.605 -12.207 20.439 hybrid contribution -1.414 -0.480 -1.012 1.804 sum 9.067 -13.085 -13.220 20.693 Atomic orbital electron populations 1.21821 0.92299 1.03022 1.03973 1.23052 0.95703 0.80297 1.02340 1.86629 1.24496 1.32189 1.83469 1.22479 0.80527 0.91170 0.70946 1.90653 1.60567 1.42661 1.45583 1.22243 1.07660 0.91851 0.98427 0.84007 1.22023 0.93143 1.00326 0.95765 0.86616 1.20949 0.97305 0.96724 0.97183 1.22537 0.94780 0.93224 0.98755 1.61939 1.20834 1.25991 1.14633 1.22118 0.95017 0.96209 0.96044 1.20083 0.80443 0.89842 0.80398 1.90650 1.64874 1.21607 1.62578 1.48261 1.33299 1.07478 1.44240 1.21398 1.00165 0.83037 0.97174 1.22223 1.00179 1.00431 0.99910 1.19238 0.91749 0.84497 0.91636 1.21422 1.11631 1.18066 1.05170 0.92595 1.24921 0.97895 0.96080 0.95148 1.69929 1.39085 1.24920 1.19441 0.86531 0.82380 0.77986 0.80717 1.20715 1.21105 1.19915 1.22045 0.94216 0.99923 0.90381 1.22551 0.96492 0.98300 0.95069 0.85979 0.91111 0.91375 0.90190 0.91298 0.91420 0.90497 0.89871 0.90559 0.94249 0.88560 0.92971 0.90017 0.92089 0.92283 0.93105 0.91970 0.95168 0.93881 0.92757 0.93041 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.35 -4.37 8.08 -39.26 -0.32 -4.69 16 4 C 0.50 6.42 4.15 36.01 0.15 6.57 16 5 O -0.51 -7.18 14.70 -18.74 -0.28 -7.46 16 6 C -0.18 -2.03 6.25 -91.78 -0.57 -2.60 16 7 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.09 -1.04 6.12 -91.57 -0.56 -1.60 16 9 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 10 C -0.08 -0.97 5.50 -27.06 -0.15 -1.12 16 11 C 0.03 0.45 5.20 -3.69 -0.02 0.43 16 12 N -0.51 -7.85 4.32 -236.09 -1.02 -8.87 16 13 C 0.04 0.58 4.15 -4.98 -0.02 0.56 16 14 C 0.51 10.46 7.28 -10.99 -0.08 10.38 16 15 O -0.52 -12.96 14.22 5.56 0.08 -12.89 16 16 N -0.60 -12.49 2.46 -175.06 -0.43 -12.92 16 17 C 0.11 1.68 5.95 -4.04 -0.02 1.66 16 18 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 19 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 20 C -0.52 -14.68 9.39 -34.44 -0.32 -15.01 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 24 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.06 0.96 4.79 -3.99 -0.02 0.94 16 29 C -0.11 -1.33 6.32 -90.69 -0.57 -1.90 16 30 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 39 H 0.04 0.54 3.93 -51.93 -0.20 0.33 16 40 H 0.10 1.31 7.12 -51.93 -0.37 0.94 16 41 H 0.05 0.75 7.04 -51.93 -0.37 0.38 16 42 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 43 H 0.06 0.81 6.28 -51.93 -0.33 0.48 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.64 7.41 -51.92 -0.38 0.26 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 48 H 0.04 1.27 7.42 -51.92 -0.39 0.88 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.05 0.80 5.37 -51.93 -0.28 0.52 16 51 H 0.11 2.06 6.12 -51.93 -0.32 1.74 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -33.84 398.52 -10.05 -43.89 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.48 Total: 1.58 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.33 Total: 4.42 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.71 Total: -47.55 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.51 Total: -25.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.84 -10.05 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932063605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.048 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds