Wall clock time and date at job start Tue Mar 31 2020 20:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47082 * 2 1 4 4 C 1.34230 * 116.99985 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99974 * 180.02562 * 4 3 2 7 7 H 1.09002 * 115.58977 * 272.24891 * 6 4 3 8 8 C 1.52361 * 117.52364 * 126.42248 * 6 4 3 9 9 H 1.09002 * 115.61442 * 145.28072 * 8 6 4 10 10 C 1.52378 * 119.51431 * 1.23305 * 8 6 4 11 11 C 1.52986 * 109.97203 * 310.39269 * 10 8 6 12 12 N 1.47167 * 108.60577 * 305.51368 * 11 10 8 13 13 C 1.46897 * 111.00339 * 199.59340 * 12 11 10 14 14 C 1.50701 * 109.47261 * 170.58877 * 13 12 11 15 15 O 1.21281 * 119.99638 * 353.93385 * 14 13 12 16 16 N 1.34771 * 119.99907 * 173.93693 * 14 13 12 17 17 C 1.46498 * 120.00191 * 359.97438 * 16 14 13 18 18 C 1.53002 * 109.47159 * 90.00348 * 17 16 14 19 19 C 1.46499 * 120.00082 * 179.97438 * 16 14 13 20 20 C 1.50697 * 109.47422 * 89.99560 * 19 16 14 21 21 H 1.08001 * 120.00112 * 0.02562 * 20 19 16 22 22 C 1.37874 * 120.00100 * 179.97438 * 20 19 16 23 23 N 1.31512 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47209 * 90.00434 * 24 22 20 26 26 H 1.48499 * 109.47700 * 210.00254 * 24 22 20 27 27 H 1.48503 * 109.47323 * 330.00239 * 24 22 20 28 28 C 1.46750 * 110.31825 * 76.12089 * 12 11 10 29 29 C 1.52412 * 60.52898 * 252.58220 * 8 6 4 30 30 H 1.09006 * 117.37989 * 253.23449 * 29 8 6 31 31 H 1.08996 * 109.46638 * 299.99851 * 1 2 3 32 32 H 1.09000 * 109.47020 * 59.99950 * 1 2 3 33 33 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47519 * 240.00137 * 2 1 3 35 35 H 1.09000 * 109.47020 * 120.00050 * 2 1 3 36 36 H 1.09003 * 109.38625 * 70.54115 * 10 8 6 37 37 H 1.08997 * 109.39258 * 190.34180 * 10 8 6 38 38 H 1.09000 * 109.61203 * 185.78290 * 11 10 8 39 39 H 1.08993 * 109.61753 * 65.25105 * 11 10 8 40 40 H 1.09000 * 109.47244 * 50.58462 * 13 12 11 41 41 H 1.09004 * 109.46656 * 290.58679 * 13 12 11 42 42 H 1.08999 * 109.47464 * 210.00530 * 17 16 14 43 43 H 1.09002 * 109.47230 * 330.00783 * 17 16 14 44 44 H 1.08999 * 109.47125 * 180.02562 * 18 17 16 45 45 H 1.09007 * 109.46850 * 300.00168 * 18 17 16 46 46 H 1.08995 * 109.47284 * 59.99835 * 18 17 16 47 47 H 1.09000 * 109.47329 * 210.00257 * 19 16 14 48 48 H 1.09008 * 109.47055 * 329.99443 * 19 16 14 49 49 H 0.96998 * 120.00529 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.36512 * 64.20951 * 28 12 11 51 51 H 1.09006 * 109.35810 * 183.93898 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 1 4.0654 3.3875 -0.9810 8 6 4.9308 3.2811 1.0889 9 1 5.7287 3.9622 0.7928 10 6 5.3362 2.2161 2.1004 11 6 4.0895 1.5554 2.6917 12 7 3.2175 2.6057 3.2415 13 6 2.2645 2.0457 4.2090 14 6 1.5505 3.1677 4.9178 15 8 1.8859 4.3172 4.7253 16 7 0.5394 2.8937 5.7657 17 6 0.1340 1.5052 5.9979 18 6 0.9324 0.9299 7.1695 19 6 -0.1543 3.9843 6.4553 20 6 -1.3176 4.4489 5.6175 21 1 -1.5202 3.9786 4.6666 22 6 -2.1238 5.4738 6.0653 23 7 -1.8775 6.0462 7.2234 24 14 -3.5653 6.0502 5.0265 25 1 -4.7777 5.2720 5.3868 26 1 -3.8107 7.4931 5.2773 27 1 -3.2537 5.8437 3.5893 28 6 2.5173 3.3055 2.1582 29 6 3.5260 3.8683 1.1574 30 1 3.4131 4.9268 0.9228 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 5.9459 1.4602 1.6052 37 1 5.9131 2.6785 2.9013 38 1 4.3813 0.8689 3.4864 39 1 3.5587 1.0109 1.9108 40 1 2.8012 1.4386 4.9380 41 1 1.5369 1.4258 3.6850 42 1 -0.9300 1.4715 6.2320 43 1 0.3277 0.9154 5.1019 44 1 0.6311 -0.1034 7.3420 45 1 1.9965 0.9635 6.9353 46 1 0.7389 1.5196 8.0655 47 1 -0.5193 3.6306 7.4195 48 1 0.5360 4.8135 6.6102 49 1 -2.4445 6.7675 7.5383 50 1 1.8525 2.6086 1.6481 51 1 1.9311 4.1239 2.5764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932063605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:09 Heat of formation + Delta-G solvation = -98.773452 kcal Electronic energy + Delta-G solvation = -31681.283155 eV Core-core repulsion = 27581.349237 eV Total energy + Delta-G solvation = -4099.933918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48406 -40.83878 -39.72656 -37.70876 -36.97025 -36.19351 -34.87371 -32.76034 -32.21080 -31.60151 -30.15674 -28.47083 -27.06402 -25.51319 -24.70555 -24.25571 -23.47702 -23.46721 -21.28195 -19.98020 -19.79802 -18.61833 -18.52466 -18.06941 -17.99581 -17.48210 -17.09458 -16.74468 -16.39698 -16.08180 -15.84039 -15.28470 -15.16859 -14.87747 -14.67142 -14.60050 -14.38883 -14.09735 -14.05902 -13.72666 -13.62517 -13.37580 -13.23956 -13.10917 -13.04074 -12.95629 -12.74403 -12.66009 -12.53633 -12.47828 -12.28781 -12.14377 -11.85680 -11.73957 -11.69244 -11.61827 -11.44403 -11.03765 -10.89396 -10.62792 -10.45108 -9.39436 -9.25352 -8.20609 -6.35346 1.06856 1.36238 1.39367 1.49470 1.57172 1.88123 2.21086 2.40440 2.52959 2.96763 3.08796 3.49855 3.54414 3.67892 3.73300 3.88609 3.93936 3.97978 4.01180 4.09545 4.12643 4.27455 4.28843 4.32199 4.38544 4.42862 4.46173 4.57883 4.66607 4.76084 4.84065 4.86060 4.90583 4.96147 4.97505 5.00126 5.06419 5.08660 5.11173 5.11676 5.21882 5.24466 5.38795 5.41911 5.60049 5.85046 5.92960 6.04665 6.09036 6.66652 6.72746 6.85013 7.30963 7.56194 8.86350 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.003536 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.450264 B = 7917.448304 C = 8282.556025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.363 6.363 4 C 0.502 3.498 5 O -0.523 6.523 6 C -0.173 4.173 7 H 0.170 0.830 8 C -0.089 4.089 9 H 0.142 0.858 10 C -0.085 4.085 11 C 0.036 3.964 12 N -0.524 5.524 13 C 0.051 3.949 14 C 0.499 3.501 15 O -0.574 6.574 16 N -0.605 5.605 17 C 0.100 3.900 18 C -0.160 4.160 19 C 0.265 3.735 20 C -0.539 4.539 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.929 5.929 24 Si 0.965 3.035 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.273 1.273 28 C 0.068 3.932 29 C -0.126 4.126 30 H 0.128 0.872 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.020 0.980 48 H -0.005 1.005 49 H 0.267 0.733 50 H 0.050 0.950 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.269 -15.547 -14.213 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.280 6.280 4 C 0.348 3.652 5 O -0.413 6.413 6 C -0.191 4.191 7 H 0.187 0.813 8 C -0.108 4.108 9 H 0.160 0.840 10 C -0.122 4.122 11 C -0.091 4.091 12 N -0.249 5.249 13 C -0.080 4.080 14 C 0.287 3.713 15 O -0.453 6.453 16 N -0.338 5.338 17 C -0.022 4.022 18 C -0.219 4.219 19 C 0.144 3.856 20 C -0.577 4.577 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.569 5.569 24 Si 0.790 3.210 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.198 1.198 28 C -0.060 4.060 29 C -0.144 4.144 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.013 0.987 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.837 -14.802 -13.921 23.029 hybrid contribution -1.527 0.148 -0.449 1.598 sum 9.311 -14.654 -14.370 22.538 Atomic orbital electron populations 1.21834 0.91165 1.04367 1.03268 1.23264 0.96604 0.79340 1.02725 1.86630 1.24505 1.33642 1.83251 1.22761 0.80512 0.91570 0.70397 1.90640 1.60848 1.43247 1.46533 1.22403 1.06723 0.90656 0.99326 0.81272 1.22212 0.92943 1.00218 0.95389 0.84006 1.20984 0.96709 0.97081 0.97455 1.22610 0.94644 0.92761 0.99103 1.61906 1.20976 1.27172 1.14805 1.22027 0.95413 0.94049 0.96463 1.21027 0.79992 0.90580 0.79747 1.90622 1.66401 1.24194 1.64124 1.48280 1.33145 1.08490 1.43840 1.21721 1.00136 0.80510 0.99857 1.22150 1.00313 1.01852 0.97544 1.18656 0.90455 0.84888 0.91629 1.21673 1.12376 1.18544 1.05141 0.93036 1.25829 1.00791 0.96050 0.96340 1.70052 1.40344 1.25419 1.21058 0.85451 0.79180 0.77649 0.78746 1.18821 1.20687 1.19766 1.21832 0.94900 0.98479 0.90778 1.22473 0.97371 0.98919 0.95655 0.85429 0.92510 0.91310 0.87822 0.90491 0.91436 0.89497 0.89618 0.89092 0.94612 0.85805 0.91185 0.90965 0.88747 0.88633 0.92200 0.94229 0.96215 0.98671 0.92461 0.93230 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.29 71.98 0.74 -1.52 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -8.60 8.08 -51.42 -0.42 -9.01 16 4 C 0.50 11.90 4.15 71.24 0.30 12.19 16 5 O -0.52 -13.76 14.70 21.98 0.32 -13.44 16 6 C -0.17 -3.46 6.25 -11.55 -0.07 -3.54 16 7 H 0.17 2.41 8.14 -2.39 -0.02 2.39 16 8 C -0.09 -1.77 6.12 -11.41 -0.07 -1.84 16 9 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 10 C -0.08 -1.77 5.50 30.38 0.17 -1.60 16 11 C 0.04 0.85 5.20 86.25 0.45 1.30 16 12 N -0.52 -15.76 4.32 -900.86 -3.90 -19.65 16 13 C 0.05 1.54 4.15 85.56 0.36 1.89 16 14 C 0.50 21.11 7.28 87.66 0.64 21.75 16 15 O -0.57 -30.18 14.22 -3.03 -0.04 -30.22 16 16 N -0.61 -25.86 2.46 -826.16 -2.03 -27.89 16 17 C 0.10 3.06 5.95 86.38 0.51 3.57 16 18 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 19 C 0.27 14.49 5.16 85.63 0.44 14.93 16 20 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 22 C 0.01 0.51 5.46 84.65 0.46 0.97 16 23 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 24 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.07 2.13 4.79 86.28 0.41 2.55 16 29 C -0.13 -3.08 6.32 -10.84 -0.07 -3.14 16 30 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 36 H 0.09 1.67 7.90 -2.39 -0.02 1.65 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.88 7.76 -2.39 -0.02 1.86 16 39 H 0.04 0.90 3.93 -2.39 -0.01 0.89 16 40 H 0.12 3.03 7.12 -2.39 -0.02 3.01 16 41 H 0.07 1.87 7.04 -2.38 -0.02 1.85 16 42 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 43 H 0.09 2.25 6.28 -2.39 -0.01 2.24 16 44 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.37 7.41 -2.38 -0.02 1.36 16 46 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 48 H 0.00 -0.31 7.42 -2.38 -0.02 -0.32 16 49 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.05 1.54 5.37 -2.39 -0.01 1.53 16 51 H 0.06 2.54 6.12 -2.38 -0.01 2.53 16 Total: -1.00 -77.70 398.52 2.86 -74.84 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.92 Total: 19.92 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.69 Total: 14.72 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.64 Total: -103.92 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.14 Total: -52.67 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.70 2.86 -74.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932063605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.935 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds