Wall clock time and date at job start Tue Mar 31 2020 22:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47033 * 2 1 4 4 C 1.34221 * 117.00047 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99934 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99998 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.54258 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46901 * 299.81805 * 7 6 4 9 9 C 1.53000 * 109.47096 * 179.82538 * 7 6 4 10 10 N 1.46901 * 109.47310 * 59.82076 * 7 6 4 11 11 C 1.46895 * 111.00119 * 205.00062 * 10 7 6 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 7 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 5.38589 * 146.84024 * 245.82279 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.53174 * 109.61883 * 300.21752 * 6 4 3 26 26 C 1.53094 * 109.15817 * 62.93018 * 25 6 4 27 27 O 1.42901 * 109.41436 * 57.61309 * 26 25 6 28 28 C 1.42902 * 114.09718 * 298.83824 * 27 26 25 29 29 C 1.53085 * 109.41483 * 61.15842 * 28 27 26 30 30 H 1.09006 * 109.47201 * 299.99501 * 1 2 3 31 31 H 1.08994 * 109.47203 * 60.00259 * 1 2 3 32 32 H 1.09004 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47186 * 239.99855 * 2 1 3 34 34 H 1.09000 * 109.46899 * 120.00083 * 2 1 3 35 35 H 1.09003 * 109.46647 * 299.99422 * 9 7 6 36 36 H 1.08997 * 109.47308 * 59.99469 * 9 7 6 37 37 H 1.09002 * 109.46929 * 180.02562 * 9 7 6 38 38 H 1.00903 * 110.99388 * 81.04500 * 10 7 6 39 39 H 1.08998 * 109.47324 * 59.99878 * 11 10 7 40 40 H 1.09002 * 109.47421 * 300.00055 * 11 10 7 41 41 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 42 42 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.52750 * 182.83774 * 25 6 4 45 45 H 1.09003 * 109.52345 * 303.02736 * 25 6 4 46 46 H 1.08994 * 109.48422 * 297.62859 * 26 25 6 47 47 H 1.09004 * 109.48785 * 177.59641 * 26 25 6 48 48 H 1.09001 * 109.47985 * 301.17731 * 28 27 26 49 49 H 1.09000 * 109.49154 * 181.14530 * 28 27 26 50 50 H 1.08997 * 109.52614 * 182.48740 * 29 28 27 51 51 H 1.09005 * 109.57386 * 62.32717 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 6 5.4487 2.8593 -0.0010 8 1 5.7854 2.3308 0.8909 9 6 6.0317 4.2739 -0.0061 10 7 5.9022 2.1384 -1.1979 11 6 7.2201 1.5282 -0.9771 12 6 7.6576 0.7876 -2.2423 13 1 7.6320 1.4714 -3.0909 14 6 6.7438 -0.3390 -2.4924 15 7 6.0388 -1.2065 -2.6875 16 6 9.0811 0.2581 -2.0569 17 6 9.5574 -0.3636 -3.3444 18 1 8.9099 -0.3792 -4.2086 19 6 10.8224 -0.9070 -3.4209 20 7 11.6110 -0.8877 -2.3686 21 14 11.4157 -1.6708 -5.0190 22 1 10.3468 -1.5661 -6.0445 23 1 12.6265 -0.9524 -5.4914 24 1 11.7458 -3.1007 -4.7917 25 6 3.4457 3.6898 -1.2480 26 6 1.9221 3.8317 -1.1993 27 8 1.5465 4.5115 0.0003 28 6 1.9228 3.8307 1.1990 29 6 3.4463 3.6887 1.2467 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.6950 4.8024 -0.8980 36 1 5.6951 4.8087 0.8820 37 1 7.1202 4.2182 -0.0064 38 1 5.9156 2.7467 -2.0029 39 1 7.1601 0.8243 -0.1470 40 1 7.9461 2.3064 -0.7418 41 1 9.0896 -0.4921 -1.2662 42 1 9.7421 1.0808 -1.7844 43 1 12.5008 -1.2703 -2.4223 44 1 3.9031 4.6789 -1.2729 45 1 3.7313 3.1329 -2.1404 46 1 1.4642 2.8428 -1.2152 47 1 1.5824 4.4037 -2.0628 48 1 1.4649 2.8416 1.2144 49 1 1.5838 4.4017 2.0633 50 1 3.7325 3.1309 2.1383 51 1 3.9046 4.6773 1.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933884848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:26 Heat of formation + Delta-G solvation = -116.343654 kcal Electronic energy + Delta-G solvation = -31349.512066 eV Core-core repulsion = 27248.816247 eV Total energy + Delta-G solvation = -4100.695820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38391 -38.98163 -37.85528 -36.60255 -35.82067 -34.10701 -33.20146 -31.90077 -31.48124 -31.25647 -29.14586 -26.66918 -25.95616 -23.98852 -23.94966 -22.84502 -21.95406 -21.74896 -21.56409 -19.26527 -17.54373 -17.10386 -16.90954 -16.39537 -16.25808 -16.09386 -15.97859 -15.02227 -14.94806 -14.54404 -14.47800 -14.41108 -14.10154 -13.84592 -13.36278 -13.16467 -13.02901 -12.97363 -12.54906 -12.53823 -12.40439 -12.22480 -12.13037 -11.95012 -11.86835 -11.79183 -11.60900 -11.41537 -11.30250 -11.15890 -11.03500 -10.81974 -10.64162 -10.51581 -10.39974 -10.31556 -10.19166 -10.03644 -9.66140 -9.48157 -9.17531 -8.44341 -8.21376 -6.07824 -4.10479 2.37365 2.57824 3.29206 3.37428 3.42266 3.72405 3.86666 3.97742 4.03531 4.32885 4.39515 4.42617 4.64084 4.71894 4.77280 4.78271 4.83748 5.00495 5.01782 5.08923 5.12793 5.13562 5.27241 5.30481 5.32258 5.36157 5.47770 5.50625 5.57934 5.60036 5.63679 5.65969 5.68258 5.74491 5.76967 5.85081 5.90500 5.93447 6.06557 6.14172 6.47005 6.52049 6.55125 7.02862 7.12566 7.45013 7.52857 7.57986 7.88015 7.92345 8.26019 8.72424 8.94770 9.54714 11.03182 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002849 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.160563 B = 9824.785816 C =10737.464322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.462 6.462 6 C -0.034 4.034 7 C 0.105 3.895 8 H 0.087 0.913 9 C -0.186 4.186 10 N -0.678 5.678 11 C 0.073 3.927 12 C 0.011 3.989 13 H 0.096 0.904 14 C 0.256 3.744 15 N -0.477 5.477 16 C 0.032 3.968 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.146 4.146 26 C 0.051 3.949 27 O -0.380 6.380 28 C 0.052 3.948 29 C -0.149 4.149 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.337 0.663 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.025 0.975 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 13.894 8.746 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.279 6.279 4 C 0.303 3.697 5 O -0.345 6.345 6 C -0.036 4.036 7 C -0.006 4.006 8 H 0.105 0.895 9 C -0.245 4.245 10 N -0.308 5.308 11 C -0.056 4.056 12 C -0.011 4.011 13 H 0.114 0.886 14 C -0.061 4.061 15 N -0.154 5.154 16 C -0.007 4.007 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.183 4.183 26 C -0.026 4.026 27 O -0.299 6.299 28 C -0.024 4.024 29 C -0.187 4.187 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.436 11.771 8.654 25.942 hybrid contribution 1.641 0.127 -0.824 1.841 sum -19.795 11.899 7.830 24.387 Atomic orbital electron populations 1.21793 0.92911 1.02813 1.03180 1.22984 0.94996 0.81053 1.02743 1.86632 1.25173 1.31479 1.84578 1.23374 0.80359 0.92264 0.73728 1.90764 1.59825 1.42137 1.41748 1.20671 0.96052 0.89100 0.97761 1.21315 0.90532 0.93233 0.95481 0.89521 1.22648 1.01937 0.97153 1.02743 1.60485 1.29127 1.36607 1.04561 1.22027 0.87862 0.97554 0.98201 1.19171 0.94466 0.89991 0.97498 0.88634 1.28694 0.91737 0.93688 0.91988 1.80892 1.12588 1.11988 1.09933 1.19155 0.86265 0.97079 0.98168 1.21189 0.99503 1.38251 0.97251 0.92489 1.24958 0.96789 0.95850 0.96442 1.69954 1.08704 1.45518 1.28899 0.86542 0.78714 0.79075 0.83787 1.19683 1.20888 1.20982 1.22289 0.97573 1.01264 0.97190 1.22833 0.93527 0.98775 0.87435 1.87886 1.79915 1.48338 1.13719 1.22790 0.93117 0.98808 0.87729 1.22347 0.98101 1.01659 0.96564 0.91731 0.91612 0.90488 0.91173 0.91540 0.91775 0.91695 0.91553 0.84457 0.90383 0.93484 0.95614 0.94565 0.92900 0.89444 0.89578 0.90954 0.89035 0.90974 0.89067 0.90477 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.04 4.62 -39.24 -0.18 -4.22 16 4 C 0.46 6.00 6.33 36.00 0.23 6.22 16 5 O -0.46 -7.88 14.96 -18.75 -0.28 -8.16 16 6 C -0.03 -0.34 0.36 -155.48 -0.06 -0.40 16 7 C 0.11 1.12 1.43 -67.71 -0.10 1.02 16 8 H 0.09 1.04 7.76 -51.93 -0.40 0.64 16 9 C -0.19 -1.53 8.46 37.16 0.31 -1.22 16 10 N -0.68 -8.82 4.29 -106.73 -0.46 -9.28 16 11 C 0.07 1.12 4.85 -3.83 -0.02 1.10 16 12 C 0.01 0.20 2.35 -93.41 -0.22 -0.02 16 13 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 14 C 0.26 5.64 13.66 -20.80 -0.28 5.36 16 15 N -0.48 -11.48 18.53 42.11 0.78 -10.70 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 17 C -0.52 -14.18 8.60 -34.44 -0.30 -14.48 16 18 H 0.06 1.54 7.59 -52.49 -0.40 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.15 -1.31 4.30 -26.59 -0.11 -1.43 16 26 C 0.05 0.46 6.55 37.21 0.24 0.71 16 27 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 28 C 0.05 0.44 6.55 37.20 0.24 0.68 16 29 C -0.15 -1.21 4.64 -26.60 -0.12 -1.33 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 35 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 36 H 0.06 0.46 6.37 -51.93 -0.33 0.13 16 37 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 38 H 0.34 3.87 7.82 -39.29 -0.31 3.56 16 39 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 40 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.09 0.69 6.27 -51.93 -0.33 0.36 16 45 H 0.09 0.85 7.41 -51.93 -0.38 0.47 16 46 H 0.07 0.72 5.52 -51.93 -0.29 0.44 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.65 5.52 -51.93 -0.29 0.37 16 49 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.65 6.28 -51.93 -0.33 0.32 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -33.32 399.44 -6.93 -40.25 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.36 Total: 0.24 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.21 Total: -1.44 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 1.06 Total: -45.09 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.84 Total: -16.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.32 -6.93 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933884848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.098 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds