Wall clock time and date at job start Tue Mar 31 2020 22:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47355 * 2 1 4 4 C 1.34229 * 117.00358 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99777 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.61118 * 179.77977 * 6 4 3 8 8 H 1.08996 * 109.47445 * 60.21854 * 7 6 4 9 9 C 1.52995 * 109.47005 * 180.22029 * 7 6 4 10 10 N 1.46901 * 109.46988 * 300.21762 * 7 6 4 11 11 C 1.46905 * 110.99902 * 155.00179 * 10 7 6 12 12 C 1.52999 * 109.46858 * 180.02562 * 11 10 7 13 13 H 1.09004 * 109.47435 * 305.00235 * 12 11 10 14 14 C 1.47200 * 109.47443 * 64.99837 * 12 11 10 15 15 N 5.38635 * 146.74679 * 114.01599 * 2 1 3 16 16 C 1.52996 * 109.47042 * 185.00210 * 12 11 10 17 17 C 1.50703 * 109.47178 * 174.99986 * 16 12 11 18 18 H 1.07994 * 120.00292 * 0.02562 * 17 16 12 19 19 C 1.37888 * 119.99901 * 179.97438 * 17 16 12 20 20 N 1.31515 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46964 * 59.99975 * 21 19 17 23 23 H 1.48490 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46819 * 300.00347 * 21 19 17 25 25 C 1.53177 * 109.54466 * 299.99394 * 6 4 3 26 26 C 1.53096 * 109.16164 * 62.89100 * 25 6 4 27 27 O 1.42908 * 109.41214 * 57.60571 * 26 25 6 28 28 C 1.42897 * 114.09789 * 298.84248 * 27 26 25 29 29 C 1.53090 * 109.41529 * 61.15937 * 28 27 26 30 30 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46565 * 299.99624 * 1 2 3 32 32 H 1.09001 * 109.47033 * 59.99990 * 1 2 3 33 33 H 1.09000 * 109.47043 * 240.00336 * 2 1 3 34 34 H 1.08996 * 109.47087 * 120.00480 * 2 1 3 35 35 H 1.09005 * 109.47250 * 59.99849 * 9 7 6 36 36 H 1.09004 * 109.47151 * 179.97438 * 9 7 6 37 37 H 1.08995 * 109.47582 * 299.99854 * 9 7 6 38 38 H 1.00903 * 110.99873 * 31.04807 * 10 7 6 39 39 H 1.08994 * 109.47090 * 299.99524 * 11 10 7 40 40 H 1.08993 * 109.47218 * 60.00251 * 11 10 7 41 41 H 1.09008 * 109.47235 * 294.99561 * 16 12 11 42 42 H 1.08997 * 109.47736 * 54.99920 * 16 12 11 43 43 H 0.96991 * 119.99869 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.52410 * 302.98921 * 25 6 4 45 45 H 1.08994 * 109.57348 * 182.82536 * 25 6 4 46 46 H 1.08993 * 109.48033 * 177.59323 * 26 25 6 47 47 H 1.09001 * 109.48095 * 297.62604 * 26 25 6 48 48 H 1.09002 * 109.48246 * 301.17405 * 28 27 26 49 49 H 1.09005 * 109.48829 * 181.14835 * 28 27 26 50 50 H 1.09002 * 109.52149 * 182.47952 * 29 28 27 51 51 H 1.09007 * 109.52293 * 62.29456 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4488 2.8612 0.0048 8 1 5.7891 2.3325 -0.8856 9 6 6.0300 4.2764 0.0109 10 7 5.8995 2.1416 1.2036 11 6 7.2188 1.5328 0.9874 12 6 7.6532 0.7936 2.2546 13 1 7.6239 1.4779 3.1025 14 6 6.7399 -0.3339 2.5024 15 7 6.0344 -1.2021 2.6979 16 6 9.0779 0.2659 2.0741 17 6 9.5509 -0.3545 3.3635 18 1 8.9004 -0.3710 4.2253 19 6 10.8140 -0.9018 3.4425 20 7 11.6061 -0.8821 2.3928 21 14 11.4006 -1.6701 5.0410 22 1 10.4999 -2.7913 5.4111 23 1 12.7833 -2.1824 4.8658 24 1 11.3850 -0.6467 6.1170 25 6 3.4491 3.6875 -1.2495 26 6 1.9252 3.8276 -1.2063 27 8 1.5446 4.5085 -0.0088 28 6 1.9177 3.8297 1.1920 29 6 3.4413 3.6897 1.2451 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.6898 4.8051 0.9013 36 1 7.1187 4.2221 0.0147 37 1 5.6957 4.8104 -0.8786 38 1 5.2228 1.4479 1.4846 39 1 7.1623 0.8284 0.1576 40 1 7.9445 2.3118 0.7540 41 1 9.0899 -0.4849 1.2839 42 1 9.7388 1.0891 1.8031 43 1 12.4947 -1.2668 2.4485 44 1 3.7384 3.1296 -2.1402 45 1 3.9053 4.6770 -1.2753 46 1 1.5879 4.3979 -2.0717 47 1 1.4686 2.8380 -1.2224 48 1 1.4610 2.8402 1.2072 49 1 1.5750 4.4015 2.0544 50 1 3.7251 3.1336 2.1386 51 1 3.8974 4.6795 1.2708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933884854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:35 Heat of formation + Delta-G solvation = -118.049273 kcal Electronic energy + Delta-G solvation = -31385.551424 eV Core-core repulsion = 27284.781643 eV Total energy + Delta-G solvation = -4100.769781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70045 -39.12092 -37.99080 -36.80576 -35.91974 -34.17304 -33.20230 -32.01809 -31.52480 -31.25879 -29.28433 -26.83948 -25.91755 -24.09794 -24.00620 -22.90177 -22.06276 -21.76686 -21.36092 -19.45650 -17.84609 -17.16876 -16.78284 -16.58171 -16.37962 -16.20304 -16.10613 -15.27256 -15.03393 -14.94476 -14.59697 -14.44266 -14.17432 -13.50207 -13.36746 -13.24931 -13.10982 -12.88217 -12.71890 -12.55584 -12.53213 -12.33479 -12.09076 -11.99532 -11.97677 -11.90659 -11.84135 -11.38716 -11.27228 -11.20036 -11.04318 -10.87873 -10.68116 -10.62764 -10.52331 -10.40720 -10.27128 -10.16887 -9.70339 -9.47987 -9.19635 -8.42250 -8.28016 -6.06378 -4.09243 1.94886 2.32653 3.33033 3.36939 3.40752 3.67537 3.69418 3.73733 4.00198 4.14184 4.32365 4.42747 4.52549 4.59302 4.64081 4.67954 4.72600 4.90500 4.99483 5.02611 5.12764 5.20072 5.27916 5.31427 5.33156 5.35449 5.39642 5.46403 5.47130 5.56644 5.60522 5.62105 5.68010 5.74497 5.81922 5.89593 5.92802 5.93753 6.16110 6.21675 6.31167 6.44898 6.60876 6.97889 7.14065 7.43801 7.47669 7.55853 7.58886 7.88818 8.27148 8.51779 8.95071 9.55683 11.04579 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002850 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.947948 B = 9821.994773 C =10735.080500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.462 3.538 5 O -0.491 6.491 6 C -0.051 4.051 7 C 0.103 3.897 8 H 0.053 0.947 9 C -0.143 4.143 10 N -0.684 5.684 11 C 0.070 3.930 12 C 0.008 3.992 13 H 0.109 0.891 14 C 0.241 3.759 15 N -0.475 5.475 16 C 0.034 3.966 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.146 4.146 26 C 0.052 3.948 27 O -0.378 6.378 28 C 0.048 3.952 29 C -0.140 4.140 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.342 0.658 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.023 0.977 42 H 0.039 0.961 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 12.844 -9.293 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.305 3.695 5 O -0.377 6.377 6 C -0.053 4.053 7 C -0.007 4.007 8 H 0.071 0.929 9 C -0.200 4.200 10 N -0.319 5.319 11 C -0.060 4.060 12 C -0.014 4.014 13 H 0.127 0.873 14 C -0.076 4.076 15 N -0.152 5.152 16 C -0.005 4.005 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.184 4.184 26 C -0.025 4.025 27 O -0.296 6.296 28 C -0.028 4.028 29 C -0.177 4.177 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.922 11.871 -8.755 26.422 hybrid contribution 0.824 -1.568 0.204 1.783 sum -21.098 10.303 -8.551 24.988 Atomic orbital electron populations 1.21803 0.92495 1.03051 1.03392 1.23106 0.95410 0.80590 1.03007 1.86672 1.24353 1.31959 1.83657 1.23847 0.80875 0.92407 0.72418 1.90740 1.60089 1.42848 1.44017 1.20943 0.96469 0.88776 0.99110 1.21356 0.89127 0.96660 0.93539 0.92866 1.21948 1.01740 0.94432 1.01905 1.60845 1.05451 1.33062 1.32508 1.22065 0.90314 0.97284 0.96292 1.19301 0.94371 0.89316 0.98435 0.87345 1.29240 0.92121 0.94131 0.92087 1.80975 1.12880 1.11452 1.09892 1.19144 0.86229 0.97083 0.98046 1.21118 0.99620 1.38360 0.97277 0.92593 1.24954 0.96744 0.95835 0.96440 1.69930 1.08701 1.45365 1.29094 0.86654 0.77735 0.79794 0.83893 1.20300 1.21204 1.20015 1.22336 0.98161 1.01941 0.95944 1.22799 0.92971 0.98736 0.87979 1.87900 1.79782 1.48323 1.13635 1.22894 0.93682 0.98688 0.87565 1.22267 0.96966 1.02079 0.96426 0.90249 0.91435 0.91569 0.91215 0.90931 0.91285 0.91529 0.92381 0.83650 0.94514 0.89238 0.95815 0.94260 0.92780 0.90439 0.88547 0.88832 0.91200 0.91219 0.88716 0.89437 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.05 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.65 4.60 -39.26 -0.18 -3.83 16 4 C 0.46 5.71 5.96 36.01 0.21 5.93 16 5 O -0.49 -7.88 14.04 -18.75 -0.26 -8.15 16 6 C -0.05 -0.52 0.31 -155.48 -0.05 -0.57 16 7 C 0.10 1.19 1.49 -67.71 -0.10 1.09 16 8 H 0.05 0.68 7.76 -51.93 -0.40 0.27 16 9 C -0.14 -1.34 8.71 37.15 0.32 -1.01 16 10 N -0.68 -9.72 5.50 -106.73 -0.59 -10.31 16 11 C 0.07 1.14 4.92 -3.82 -0.02 1.12 16 12 C 0.01 0.15 2.42 -93.41 -0.23 -0.08 16 13 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 14 C 0.24 5.27 12.97 -20.77 -0.27 5.00 16 15 N -0.48 -11.13 18.53 42.14 0.78 -10.35 16 16 C 0.03 0.81 4.42 -27.88 -0.12 0.68 16 17 C -0.53 -14.36 8.60 -34.43 -0.30 -14.66 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.15 -1.18 4.64 -26.59 -0.12 -1.30 16 26 C 0.05 0.42 6.55 37.21 0.24 0.66 16 27 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 28 C 0.05 0.43 6.55 37.20 0.24 0.67 16 29 C -0.14 -1.31 4.43 -26.60 -0.12 -1.43 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 34 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 35 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 36 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.06 0.44 6.37 -51.93 -0.33 0.11 16 38 H 0.34 5.50 4.96 -39.29 -0.20 5.30 16 39 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.09 1.31 7.43 -51.93 -0.39 0.92 16 41 H 0.02 0.62 8.14 -51.92 -0.42 0.19 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.69 6.29 -51.93 -0.33 0.36 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.60 5.52 -51.93 -0.29 0.31 16 48 H 0.07 0.66 5.51 -51.93 -0.29 0.37 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.92 7.63 -51.93 -0.40 0.52 16 51 H 0.10 0.83 6.27 -51.93 -0.33 0.50 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -32.32 396.57 -6.98 -39.29 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.25 Total: 2.13 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 0.22 Total: -2.12 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.93 Total: -45.92 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.82 Total: -16.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.32 -6.98 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933884854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.758 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds