Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47355 * 2 1 4 4 C 1.34229 * 117.00358 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99777 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.61118 * 179.77977 * 6 4 3 8 8 H 1.08996 * 109.47445 * 60.21854 * 7 6 4 9 9 C 1.52995 * 109.47005 * 180.22029 * 7 6 4 10 10 N 1.46901 * 109.46988 * 300.21762 * 7 6 4 11 11 C 1.46905 * 110.99902 * 155.00179 * 10 7 6 12 12 C 1.52999 * 109.46858 * 180.02562 * 11 10 7 13 13 H 1.09004 * 109.47435 * 305.00235 * 12 11 10 14 14 C 1.47200 * 109.47443 * 64.99837 * 12 11 10 15 15 N 5.38635 * 146.74679 * 114.01599 * 2 1 3 16 16 C 1.52996 * 109.47042 * 185.00210 * 12 11 10 17 17 C 1.50703 * 109.47178 * 174.99986 * 16 12 11 18 18 H 1.07994 * 120.00292 * 0.02562 * 17 16 12 19 19 C 1.37888 * 119.99901 * 179.97438 * 17 16 12 20 20 N 1.31515 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46964 * 59.99975 * 21 19 17 23 23 H 1.48490 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46819 * 300.00347 * 21 19 17 25 25 C 1.53177 * 109.54466 * 299.99394 * 6 4 3 26 26 C 1.53096 * 109.16164 * 62.89100 * 25 6 4 27 27 O 1.42908 * 109.41214 * 57.60571 * 26 25 6 28 28 C 1.42897 * 114.09789 * 298.84248 * 27 26 25 29 29 C 1.53090 * 109.41529 * 61.15937 * 28 27 26 30 30 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46565 * 299.99624 * 1 2 3 32 32 H 1.09001 * 109.47033 * 59.99990 * 1 2 3 33 33 H 1.09000 * 109.47043 * 240.00336 * 2 1 3 34 34 H 1.08996 * 109.47087 * 120.00480 * 2 1 3 35 35 H 1.09005 * 109.47250 * 59.99849 * 9 7 6 36 36 H 1.09004 * 109.47151 * 179.97438 * 9 7 6 37 37 H 1.08995 * 109.47582 * 299.99854 * 9 7 6 38 38 H 1.00903 * 110.99873 * 31.04807 * 10 7 6 39 39 H 1.08994 * 109.47090 * 299.99524 * 11 10 7 40 40 H 1.08993 * 109.47218 * 60.00251 * 11 10 7 41 41 H 1.09008 * 109.47235 * 294.99561 * 16 12 11 42 42 H 1.08997 * 109.47736 * 54.99920 * 16 12 11 43 43 H 0.96991 * 119.99869 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.52410 * 302.98921 * 25 6 4 45 45 H 1.08994 * 109.57348 * 182.82536 * 25 6 4 46 46 H 1.08993 * 109.48033 * 177.59323 * 26 25 6 47 47 H 1.09001 * 109.48095 * 297.62604 * 26 25 6 48 48 H 1.09002 * 109.48246 * 301.17405 * 28 27 26 49 49 H 1.09005 * 109.48829 * 181.14835 * 28 27 26 50 50 H 1.09002 * 109.52149 * 182.47952 * 29 28 27 51 51 H 1.09007 * 109.52293 * 62.29456 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4488 2.8612 0.0048 8 1 5.7891 2.3325 -0.8856 9 6 6.0300 4.2764 0.0109 10 7 5.8995 2.1416 1.2036 11 6 7.2188 1.5328 0.9874 12 6 7.6532 0.7936 2.2546 13 1 7.6239 1.4779 3.1025 14 6 6.7399 -0.3339 2.5024 15 7 6.0344 -1.2021 2.6979 16 6 9.0779 0.2659 2.0741 17 6 9.5509 -0.3545 3.3635 18 1 8.9004 -0.3710 4.2253 19 6 10.8140 -0.9018 3.4425 20 7 11.6061 -0.8821 2.3928 21 14 11.4006 -1.6701 5.0410 22 1 10.4999 -2.7913 5.4111 23 1 12.7833 -2.1824 4.8658 24 1 11.3850 -0.6467 6.1170 25 6 3.4491 3.6875 -1.2495 26 6 1.9252 3.8276 -1.2063 27 8 1.5446 4.5085 -0.0088 28 6 1.9177 3.8297 1.1920 29 6 3.4413 3.6897 1.2451 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.6898 4.8051 0.9013 36 1 7.1187 4.2221 0.0147 37 1 5.6957 4.8104 -0.8786 38 1 5.2228 1.4479 1.4846 39 1 7.1623 0.8284 0.1576 40 1 7.9445 2.3118 0.7540 41 1 9.0899 -0.4849 1.2839 42 1 9.7388 1.0891 1.8031 43 1 12.4947 -1.2668 2.4485 44 1 3.7384 3.1296 -2.1402 45 1 3.9053 4.6770 -1.2753 46 1 1.5879 4.3979 -2.0717 47 1 1.4686 2.8380 -1.2224 48 1 1.4610 2.8402 1.2072 49 1 1.5750 4.4015 2.0544 50 1 3.7251 3.1336 2.1386 51 1 3.8974 4.6795 1.2708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933884854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -137.700308 kcal Electronic energy + Delta-G solvation = -31386.403557 eV Core-core repulsion = 27284.781643 eV Total energy + Delta-G solvation = -4101.621914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.59380 -39.95621 -39.12524 -38.13186 -37.06234 -35.78657 -34.82123 -33.15856 -32.47492 -32.12589 -30.37976 -28.20025 -27.13089 -24.99323 -24.73920 -24.25002 -23.55189 -22.84803 -22.32900 -20.33841 -18.76652 -18.57536 -18.30307 -18.01386 -17.31136 -17.19546 -16.98128 -16.62817 -16.22325 -15.89107 -15.68518 -15.34415 -15.21624 -14.83798 -14.73073 -14.39521 -14.22928 -14.02382 -13.82449 -13.71663 -13.71549 -13.35403 -13.25044 -13.14975 -13.08411 -12.92207 -12.84842 -12.74812 -12.65919 -12.48941 -12.36010 -12.22695 -12.01724 -11.94734 -11.74752 -11.49575 -11.39761 -11.34519 -11.21507 -10.93849 -10.56882 -10.39325 -9.45071 -8.20989 -6.29775 0.98512 1.39421 1.41085 1.48494 1.48847 1.92212 1.94391 2.39961 2.98124 3.06927 3.13456 3.22933 3.28337 3.54396 3.67722 3.77190 3.89354 3.98441 4.03584 4.13890 4.25600 4.32630 4.35667 4.38704 4.48135 4.56037 4.63322 4.65177 4.67195 4.74984 4.82399 4.84499 4.85415 4.87671 4.91801 5.00021 5.03137 5.06530 5.13822 5.21522 5.22737 5.35799 5.43694 5.55273 5.59082 5.76648 5.98064 6.18866 6.24932 6.31144 6.55837 6.72891 6.84413 7.38530 8.89951 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002850 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.947948 B = 9821.994773 C =10735.080500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.339 6.339 4 C 0.461 3.539 5 O -0.535 6.535 6 C -0.049 4.049 7 C 0.101 3.899 8 H 0.040 0.960 9 C -0.138 4.138 10 N -0.679 5.679 11 C 0.082 3.918 12 C 0.019 3.981 13 H 0.126 0.874 14 C 0.249 3.751 15 N -0.505 5.505 16 C 0.041 3.959 17 C -0.541 4.541 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.951 3.049 22 H -0.282 1.282 23 H -0.280 1.280 24 H -0.261 1.261 25 C -0.141 4.141 26 C 0.050 3.950 27 O -0.386 6.386 28 C 0.050 3.950 29 C -0.135 4.135 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.331 0.669 39 H 0.019 0.981 40 H 0.110 0.890 41 H -0.006 1.006 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.109 0.891 50 H 0.073 0.927 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.413 14.941 -9.251 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.256 6.256 4 C 0.306 3.694 5 O -0.424 6.424 6 C -0.050 4.050 7 C -0.009 4.009 8 H 0.058 0.942 9 C -0.195 4.195 10 N -0.312 5.312 11 C -0.048 4.048 12 C -0.003 4.003 13 H 0.144 0.856 14 C -0.067 4.067 15 N -0.183 5.183 16 C 0.003 3.997 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.776 3.224 22 H -0.208 1.208 23 H -0.205 1.205 24 H -0.185 1.185 25 C -0.179 4.179 26 C -0.026 4.026 27 O -0.305 6.305 28 C -0.026 4.026 29 C -0.173 4.173 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.037 0.963 40 H 0.128 0.872 41 H 0.013 0.987 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.127 0.873 50 H 0.092 0.908 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.981 13.999 -8.716 28.286 hybrid contribution 1.093 -2.244 0.149 2.501 sum -21.888 11.755 -8.567 26.280 Atomic orbital electron populations 1.21795 0.89807 1.04210 1.04033 1.23249 0.97475 0.80115 1.01800 1.86712 1.23463 1.32345 1.83041 1.24404 0.81087 0.92879 0.71046 1.90726 1.61067 1.44391 1.46243 1.21012 0.95386 0.87786 1.00854 1.21493 0.90304 0.97417 0.91708 0.94193 1.21944 1.01332 0.92838 1.03405 1.60902 1.04217 1.32127 1.33947 1.21907 0.92068 0.97195 0.93639 1.19266 0.91410 0.88840 1.00798 0.85640 1.29712 0.91818 0.94061 0.91146 1.80961 1.13913 1.12299 1.11123 1.18957 0.88827 0.96137 0.95809 1.21514 0.99740 1.38340 0.98329 0.92821 1.25740 0.97101 0.96443 0.99499 1.70029 1.09075 1.46336 1.30872 0.85718 0.77216 0.78954 0.80515 1.20820 1.20546 1.18525 1.22373 0.98352 1.02417 0.94761 1.22906 0.92771 0.98720 0.88220 1.87896 1.79912 1.48607 1.14050 1.22899 0.93132 0.98536 0.88076 1.22254 0.97518 1.02254 0.95246 0.88844 0.91104 0.90523 0.91788 0.92879 0.90661 0.92000 0.89977 0.84942 0.96304 0.87163 0.98728 0.94266 0.92645 0.90002 0.86771 0.86687 0.91993 0.92121 0.87287 0.90829 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 10.29 71.98 0.74 -1.00 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.34 -7.07 4.60 -51.41 -0.24 -7.31 16 4 C 0.46 11.48 5.96 71.24 0.42 11.91 16 5 O -0.54 -17.86 14.04 21.96 0.31 -17.56 16 6 C -0.05 -0.94 0.31 -52.81 -0.02 -0.95 16 7 C 0.10 2.21 1.49 44.91 0.07 2.28 16 8 H 0.04 1.00 7.76 -2.39 -0.02 0.98 16 9 C -0.14 -2.23 8.71 71.98 0.63 -1.60 16 10 N -0.68 -19.00 5.50 -491.58 -2.70 -21.70 16 11 C 0.08 2.65 4.92 86.30 0.42 3.07 16 12 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 13 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 14 C 0.25 11.07 12.97 89.45 1.16 12.23 16 15 N -0.51 -24.23 18.53 20.00 0.37 -23.86 16 16 C 0.04 2.02 4.42 29.85 0.13 2.15 16 17 C -0.54 -29.70 8.60 25.60 0.22 -29.48 16 18 H 0.05 2.91 7.59 -2.91 -0.02 2.89 16 19 C 0.01 0.63 5.46 84.66 0.46 1.09 16 20 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 21 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 C -0.14 -1.95 4.64 30.69 0.14 -1.81 16 26 C 0.05 0.69 6.55 72.01 0.47 1.16 16 27 O -0.39 -6.51 10.77 -148.98 -1.60 -8.12 16 28 C 0.05 0.80 6.55 72.01 0.47 1.27 16 29 C -0.14 -2.32 4.43 30.68 0.14 -2.18 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.07 1.15 6.36 -2.38 -0.02 1.13 16 36 H 0.06 1.08 7.45 -2.38 -0.02 1.06 16 37 H 0.08 0.94 6.37 -2.39 -0.02 0.93 16 38 H 0.33 10.77 4.96 -89.69 -0.45 10.32 16 39 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 40 H 0.11 3.10 7.43 -2.39 -0.02 3.08 16 41 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.20 6.29 -2.39 -0.02 1.19 16 46 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 0.96 5.52 -2.39 -0.01 0.94 16 48 H 0.06 1.08 5.51 -2.39 -0.01 1.07 16 49 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.07 1.48 7.63 -2.39 -0.02 1.47 16 51 H 0.11 1.59 6.27 -2.38 -0.01 1.57 16 Total: -1.00 -70.24 396.57 4.81 -65.43 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.49 Total: 20.47 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.88 Total: 0.20 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -2.05 Total: -99.50 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.53 Total: -32.98 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.24 4.81 -65.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933884854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.274 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds