Wall clock time and date at job start Tue Mar 31 2020 21:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.46837 * 2 1 4 4 C 1.42907 * 114.00017 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.56053 * 355.69065 * 4 3 2 6 6 C 1.52995 * 117.49829 * 141.38112 * 4 3 2 7 7 C 1.52995 * 60.00272 * 107.49094 * 6 4 3 8 8 H 1.09005 * 117.52250 * 252.51964 * 7 6 4 9 9 C 1.50698 * 117.50051 * 107.48667 * 7 6 4 10 10 O 1.21281 * 120.00292 * 291.38207 * 9 7 6 11 11 N 1.34779 * 119.99914 * 111.38198 * 9 7 6 12 12 C 1.47150 * 120.98728 * 0.02562 * 11 9 7 13 13 C 1.53296 * 108.37328 * 129.38452 * 12 11 9 14 14 O 1.42977 * 109.22689 * 52.35703 * 13 12 11 15 15 C 1.42900 * 114.20193 * 297.50378 * 14 13 12 16 16 C 1.52977 * 109.56112 * 302.52361 * 15 14 13 17 17 C 1.53191 * 109.34960 * 300.96003 * 16 15 14 18 18 N 1.46930 * 108.77751 * 305.43060 * 17 16 15 19 19 C 1.36939 * 120.64513 * 233.65294 * 18 17 16 20 20 H 1.08007 * 119.99753 * 29.30443 * 19 18 17 21 21 C 1.38810 * 120.00088 * 209.31044 * 19 18 17 22 22 N 1.31617 * 119.99836 * 24.33662 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 204.33529 * 21 19 18 24 24 H 1.48493 * 109.46955 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47189 * 300.00208 * 23 21 19 26 26 H 1.48502 * 109.46822 * 59.99964 * 23 21 19 27 27 C 1.46926 * 118.71262 * 53.92366 * 18 17 16 28 28 C 1.52991 * 109.54577 * 182.22132 * 15 14 13 29 29 C 1.47150 * 120.98766 * 180.02562 * 11 9 7 30 30 H 1.09001 * 109.47117 * 299.99213 * 1 2 3 31 31 H 1.08994 * 109.47308 * 60.00245 * 1 2 3 32 32 H 1.09006 * 109.46436 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47396 * 240.00347 * 2 1 3 34 34 H 1.09004 * 109.47518 * 120.00274 * 2 1 3 35 35 H 1.09003 * 117.50156 * 0.02562 * 6 4 3 36 36 H 1.08997 * 117.50106 * 214.98279 * 6 4 3 37 37 H 1.08997 * 109.68868 * 249.11019 * 12 11 9 38 38 H 1.09007 * 109.68426 * 9.63096 * 12 11 9 39 39 H 1.08999 * 109.51383 * 172.27595 * 13 12 11 40 40 H 1.08996 * 109.51492 * 292.38196 * 13 12 11 41 41 H 1.09003 * 109.49373 * 180.99694 * 16 15 14 42 42 H 1.09004 * 109.51574 * 60.93767 * 16 15 14 43 43 H 1.09002 * 109.58753 * 185.64336 * 17 16 15 44 44 H 1.09001 * 109.70486 * 65.28908 * 17 16 15 45 45 H 0.97001 * 120.00351 * 5.77957 * 22 21 19 46 46 H 1.09001 * 109.58819 * 65.85549 * 27 18 17 47 47 H 1.09007 * 109.58805 * 186.28350 * 27 18 17 48 48 H 1.09001 * 109.49355 * 179.00165 * 28 15 14 49 49 H 1.08997 * 109.49565 * 299.05257 * 28 15 14 50 50 H 1.09005 * 109.67606 * 110.76247 * 29 11 9 51 51 H 1.08998 * 109.67755 * 350.22413 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9771 0.5199 0.0748 6 6 4.0516 2.5729 -0.8463 7 6 4.0420 2.6877 0.6793 8 1 3.3574 3.4090 1.1258 9 6 5.3531 2.5042 1.3992 10 8 5.8834 1.4138 1.4249 11 7 5.9363 3.5518 2.0146 12 6 5.3118 4.8841 1.9977 13 6 5.2540 5.4090 3.4368 14 8 6.5566 5.3267 4.0207 15 6 7.0681 3.9966 4.1265 16 6 6.1013 3.1396 4.9456 17 6 5.9321 3.7554 6.3381 18 7 7.2591 3.9191 6.9472 19 6 7.5281 3.3983 8.1848 20 1 7.0104 2.5124 8.5220 21 6 8.4661 4.0088 9.0059 22 7 8.7428 5.2864 8.8524 23 14 9.3357 3.0172 10.3288 24 1 10.2827 3.8945 11.0627 25 1 8.3324 2.4688 11.2762 26 1 10.0838 1.9000 9.6984 27 6 8.2901 4.6578 6.2054 28 6 8.4355 4.0271 4.8121 29 6 7.2166 3.3973 2.7235 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3735 3.2191 -1.4037 36 1 5.0063 2.3647 -1.3294 37 1 5.9063 5.5606 1.3837 38 1 4.3026 4.8115 1.5921 39 1 4.9220 6.4472 3.4327 40 1 4.5556 4.8057 4.0167 41 1 6.5011 2.1300 5.0406 42 1 5.1340 3.1020 4.4446 43 1 5.3244 3.0961 6.9578 44 1 5.4465 4.7276 6.2534 45 1 8.2329 5.8209 8.2237 46 1 7.9926 5.7019 6.1078 47 1 9.2393 4.5944 6.7376 48 1 8.8169 3.0106 4.9083 49 1 9.1283 4.6206 4.2157 50 1 8.0023 3.9230 2.1808 51 1 7.4680 2.3396 2.8008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949038411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:21 Heat of formation + Delta-G solvation = -64.754953 kcal Electronic energy + Delta-G solvation = -31115.513890 eV Core-core repulsion = 27017.055124 eV Total energy + Delta-G solvation = -4098.458766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.86563 -39.48630 -38.24310 -36.41402 -35.42368 -34.67093 -33.16685 -31.27357 -31.11762 -29.85054 -28.79887 -27.30380 -24.73883 -23.72428 -23.26987 -23.15594 -22.45395 -22.31824 -20.75491 -19.11132 -18.92459 -18.14960 -17.43990 -16.66987 -16.46296 -15.91293 -15.69349 -15.55825 -15.05809 -14.83767 -14.70340 -14.19157 -14.03146 -13.71772 -13.52846 -13.43793 -13.35898 -13.12344 -12.98026 -12.82227 -12.50210 -12.34049 -11.96683 -11.92513 -11.73014 -11.59349 -11.51003 -11.30947 -10.95212 -10.90807 -10.68114 -10.52402 -10.43208 -10.30992 -10.14798 -9.97162 -9.82121 -9.55262 -9.47856 -9.23346 -8.50018 -8.32437 -6.81280 -6.01377 -3.19347 2.26498 2.59907 3.15942 3.51370 3.52149 3.55453 3.73534 3.90110 4.25903 4.37497 4.56035 4.63139 4.66422 4.70128 4.71849 4.82522 4.91238 4.99613 5.02400 5.05361 5.11841 5.22006 5.27259 5.31808 5.35479 5.43093 5.52311 5.53318 5.57196 5.60850 5.62586 5.73690 5.74204 5.81918 5.94992 6.17777 6.22889 6.23108 6.38555 6.44890 6.51042 6.68280 6.81949 6.88207 7.08143 7.21089 7.29136 7.46956 7.99053 8.06050 8.63309 9.17737 9.89937 10.36439 11.26504 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002637 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.469192 B =10614.891038 C =11304.535711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.356 6.356 4 C 0.055 3.945 5 H 0.125 0.875 6 C -0.154 4.154 7 C -0.195 4.195 8 H 0.131 0.869 9 C 0.547 3.453 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.073 3.927 13 C 0.042 3.958 14 O -0.358 6.358 15 C 0.118 3.882 16 C -0.152 4.152 17 C 0.155 3.845 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.053 0.947 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.064 2.936 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.159 3.841 28 C -0.121 4.121 29 C 0.089 3.911 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.019 0.981 45 H 0.270 0.730 46 H 0.027 0.973 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 -4.129 -21.385 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.275 6.275 4 C -0.004 4.004 5 H 0.142 0.858 6 C -0.191 4.191 7 C -0.216 4.216 8 H 0.148 0.852 9 C 0.336 3.664 10 O -0.420 6.420 11 N -0.337 5.337 12 C -0.050 4.050 13 C -0.036 4.036 14 O -0.276 6.276 15 C 0.078 3.922 16 C -0.191 4.191 17 C 0.028 3.972 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.071 0.929 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.894 3.106 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.033 3.967 28 C -0.161 4.161 29 C -0.033 4.033 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.907 -4.343 -20.086 23.265 hybrid contribution -1.397 -0.336 -1.298 1.937 sum -12.304 -4.678 -21.384 25.111 Atomic orbital electron populations 1.21758 0.93418 1.02515 1.03207 1.22591 0.95605 0.83066 1.00686 1.87806 1.18420 1.27324 1.93947 1.22592 0.82094 0.94331 1.01418 0.85757 1.23432 1.03032 1.02102 0.90555 1.22690 0.97529 1.04709 0.96688 0.85168 1.19532 0.85031 0.83611 0.78268 1.90690 1.65149 1.25014 1.61122 1.48015 1.23263 1.09210 1.53206 1.22537 0.99337 0.83888 0.99270 1.22924 0.87165 1.02065 0.91417 1.88064 1.31146 1.26942 1.81448 1.21746 0.96013 0.82535 0.91886 1.22501 0.98062 0.99904 0.98647 1.20758 0.88718 0.96902 0.90790 1.44101 1.05907 1.65142 1.16987 1.19958 1.26964 1.07937 0.92969 0.92880 1.25851 1.00217 0.96562 0.99991 1.70766 1.43887 1.04744 1.36180 0.83538 0.76467 0.74912 0.75674 1.21106 1.22056 1.22079 1.20930 0.94167 0.93292 0.88312 1.22152 0.92437 1.02158 0.99363 1.22492 0.84341 1.03578 0.92896 0.91693 0.91822 0.90822 0.92917 0.92768 0.87049 0.87484 0.90428 0.88927 0.87988 0.92245 0.91337 0.92989 0.93013 0.96329 0.91931 0.95505 0.90402 0.90780 0.92141 0.90913 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.45 6.53 37.16 0.24 0.69 16 3 O -0.36 -3.65 10.60 -35.23 -0.37 -4.02 16 4 C 0.05 0.55 5.96 -26.73 -0.16 0.39 16 5 H 0.12 1.32 7.45 -51.93 -0.39 0.94 16 6 C -0.15 -1.29 10.18 -26.74 -0.27 -1.57 16 7 C -0.19 -2.02 5.13 -91.77 -0.47 -2.49 16 8 H 0.13 1.20 6.55 -51.93 -0.34 0.86 16 9 C 0.55 7.44 7.50 -10.99 -0.08 7.36 16 10 O -0.54 -9.16 15.73 5.56 0.09 -9.07 16 11 N -0.60 -7.90 2.52 -172.28 -0.43 -8.34 16 12 C 0.07 0.75 6.55 -3.53 -0.02 0.73 16 13 C 0.04 0.53 6.60 37.31 0.25 0.77 16 14 O -0.36 -5.99 9.00 -35.23 -0.32 -6.31 16 15 C 0.12 2.01 0.68 -90.49 -0.06 1.95 16 16 C -0.15 -2.79 4.33 -26.64 -0.12 -2.91 16 17 C 0.15 3.38 6.28 -3.71 -0.02 3.36 16 18 N -0.60 -15.24 2.83 -172.04 -0.49 -15.72 16 19 C -0.35 -9.89 9.48 -15.06 -0.14 -10.04 16 20 H 0.05 1.52 7.94 -52.48 -0.42 1.10 16 21 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 22 N -0.92 -27.69 12.45 55.49 0.69 -27.00 16 23 Si 1.06 25.54 29.98 -169.99 -5.10 20.44 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.16 3.78 4.49 -3.48 -0.02 3.76 16 28 C -0.12 -2.31 5.12 -26.41 -0.14 -2.45 16 29 C 0.09 1.33 5.29 -3.54 -0.02 1.31 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.73 5.59 -51.93 -0.29 0.44 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.79 6.29 -51.93 -0.33 0.46 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 43 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.02 0.42 7.83 -51.93 -0.41 0.01 16 45 H 0.27 8.26 6.72 -40.82 -0.27 7.98 16 46 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 47 H 0.08 2.06 6.38 -51.93 -0.33 1.73 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.10 1.60 7.07 -51.93 -0.37 1.23 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -33.55 392.80 -9.30 -42.85 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.55 Total: 1.72 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.73 Total: -0.48 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.23 Total: -51.06 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.60 Total: -19.40 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.10 Total: 20.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.55 -9.30 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949038411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.904 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds