Wall clock time and date at job start Tue Mar 31 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.46837 * 2 1 4 4 C 1.42907 * 114.00017 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.56053 * 355.69065 * 4 3 2 6 6 C 1.52995 * 117.49829 * 141.38112 * 4 3 2 7 7 C 1.52995 * 60.00272 * 107.49094 * 6 4 3 8 8 H 1.09005 * 117.52250 * 252.51964 * 7 6 4 9 9 C 1.50698 * 117.50051 * 107.48667 * 7 6 4 10 10 O 1.21281 * 120.00292 * 291.38207 * 9 7 6 11 11 N 1.34779 * 119.99914 * 111.38198 * 9 7 6 12 12 C 1.47150 * 120.98728 * 0.02562 * 11 9 7 13 13 C 1.53296 * 108.37328 * 129.38452 * 12 11 9 14 14 O 1.42977 * 109.22689 * 52.35703 * 13 12 11 15 15 C 1.42900 * 114.20193 * 297.50378 * 14 13 12 16 16 C 1.52977 * 109.56112 * 302.52361 * 15 14 13 17 17 C 1.53191 * 109.34960 * 300.96003 * 16 15 14 18 18 N 1.46930 * 108.77751 * 305.43060 * 17 16 15 19 19 C 1.36939 * 120.64513 * 233.65294 * 18 17 16 20 20 H 1.08007 * 119.99753 * 29.30443 * 19 18 17 21 21 C 1.38810 * 120.00088 * 209.31044 * 19 18 17 22 22 N 1.31617 * 119.99836 * 24.33662 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 204.33529 * 21 19 18 24 24 H 1.48493 * 109.46955 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47189 * 300.00208 * 23 21 19 26 26 H 1.48502 * 109.46822 * 59.99964 * 23 21 19 27 27 C 1.46926 * 118.71262 * 53.92366 * 18 17 16 28 28 C 1.52991 * 109.54577 * 182.22132 * 15 14 13 29 29 C 1.47150 * 120.98766 * 180.02562 * 11 9 7 30 30 H 1.09001 * 109.47117 * 299.99213 * 1 2 3 31 31 H 1.08994 * 109.47308 * 60.00245 * 1 2 3 32 32 H 1.09006 * 109.46436 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47396 * 240.00347 * 2 1 3 34 34 H 1.09004 * 109.47518 * 120.00274 * 2 1 3 35 35 H 1.09003 * 117.50156 * 0.02562 * 6 4 3 36 36 H 1.08997 * 117.50106 * 214.98279 * 6 4 3 37 37 H 1.08997 * 109.68868 * 249.11019 * 12 11 9 38 38 H 1.09007 * 109.68426 * 9.63096 * 12 11 9 39 39 H 1.08999 * 109.51383 * 172.27595 * 13 12 11 40 40 H 1.08996 * 109.51492 * 292.38196 * 13 12 11 41 41 H 1.09003 * 109.49373 * 180.99694 * 16 15 14 42 42 H 1.09004 * 109.51574 * 60.93767 * 16 15 14 43 43 H 1.09002 * 109.58753 * 185.64336 * 17 16 15 44 44 H 1.09001 * 109.70486 * 65.28908 * 17 16 15 45 45 H 0.97001 * 120.00351 * 5.77957 * 22 21 19 46 46 H 1.09001 * 109.58819 * 65.85549 * 27 18 17 47 47 H 1.09007 * 109.58805 * 186.28350 * 27 18 17 48 48 H 1.09001 * 109.49355 * 179.00165 * 28 15 14 49 49 H 1.08997 * 109.49565 * 299.05257 * 28 15 14 50 50 H 1.09005 * 109.67606 * 110.76247 * 29 11 9 51 51 H 1.08998 * 109.67755 * 350.22413 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9771 0.5199 0.0748 6 6 4.0516 2.5729 -0.8463 7 6 4.0420 2.6877 0.6793 8 1 3.3574 3.4090 1.1258 9 6 5.3531 2.5042 1.3992 10 8 5.8834 1.4138 1.4249 11 7 5.9363 3.5518 2.0146 12 6 5.3118 4.8841 1.9977 13 6 5.2540 5.4090 3.4368 14 8 6.5566 5.3267 4.0207 15 6 7.0681 3.9966 4.1265 16 6 6.1013 3.1396 4.9456 17 6 5.9321 3.7554 6.3381 18 7 7.2591 3.9191 6.9472 19 6 7.5281 3.3983 8.1848 20 1 7.0104 2.5124 8.5220 21 6 8.4661 4.0088 9.0059 22 7 8.7428 5.2864 8.8524 23 14 9.3357 3.0172 10.3288 24 1 10.2827 3.8945 11.0627 25 1 8.3324 2.4688 11.2762 26 1 10.0838 1.9000 9.6984 27 6 8.2901 4.6578 6.2054 28 6 8.4355 4.0271 4.8121 29 6 7.2166 3.3973 2.7235 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3735 3.2191 -1.4037 36 1 5.0063 2.3647 -1.3294 37 1 5.9063 5.5606 1.3837 38 1 4.3026 4.8115 1.5921 39 1 4.9220 6.4472 3.4327 40 1 4.5556 4.8057 4.0167 41 1 6.5011 2.1300 5.0406 42 1 5.1340 3.1020 4.4446 43 1 5.3244 3.0961 6.9578 44 1 5.4465 4.7276 6.2534 45 1 8.2329 5.8209 8.2237 46 1 7.9926 5.7019 6.1078 47 1 9.2393 4.5944 6.7376 48 1 8.8169 3.0106 4.9083 49 1 9.1283 4.6206 4.2157 50 1 8.0023 3.9230 2.1808 51 1 7.4680 2.3396 2.8008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949038411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:20 Heat of formation + Delta-G solvation = -86.002888 kcal Electronic energy + Delta-G solvation = -31116.435270 eV Core-core repulsion = 27017.055124 eV Total energy + Delta-G solvation = -4099.380145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99777 -40.58571 -39.14436 -38.04723 -36.18509 -35.86730 -34.84401 -32.95281 -31.77898 -31.56082 -30.09557 -28.67446 -26.39482 -24.77558 -24.58754 -23.97372 -23.83411 -23.15475 -22.29131 -20.61081 -19.94983 -19.47142 -18.98615 -17.55599 -17.49850 -16.98062 -16.80168 -16.53266 -16.29567 -16.14286 -15.86549 -15.70687 -15.43501 -15.26759 -15.18965 -14.98416 -14.57849 -13.87652 -13.81432 -13.70150 -13.57347 -13.51395 -13.32956 -13.13003 -13.05851 -12.84948 -12.65282 -12.51423 -12.20810 -12.14527 -12.00215 -11.96009 -11.90970 -11.87008 -11.68998 -11.50151 -11.26614 -10.94084 -10.88653 -10.48077 -10.25253 -9.62604 -8.93521 -8.25361 -5.42965 1.29164 1.57042 1.64409 1.65472 1.83922 2.42872 2.63696 2.71158 2.74436 3.21099 3.36015 3.46227 3.62085 3.64538 3.70062 3.79466 3.87315 3.94955 3.97263 4.12309 4.15147 4.21117 4.26307 4.29957 4.37731 4.44140 4.48294 4.48385 4.56219 4.57737 4.67386 4.74915 4.76401 4.78406 4.84048 4.86494 4.92446 4.95988 5.00252 5.00433 5.11663 5.14808 5.24469 5.25327 5.43048 5.81697 6.13940 6.21010 6.24860 6.38246 6.96753 7.04950 7.76400 8.22183 8.98408 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002637 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.469192 B =10614.891038 C =11304.535711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.368 6.368 4 C 0.043 3.957 5 H 0.113 0.887 6 C -0.129 4.129 7 C -0.199 4.199 8 H 0.147 0.853 9 C 0.544 3.456 10 O -0.582 6.582 11 N -0.605 5.605 12 C 0.077 3.923 13 C 0.034 3.966 14 O -0.379 6.379 15 C 0.127 3.873 16 C -0.137 4.137 17 C 0.155 3.845 18 N -0.616 5.616 19 C -0.359 4.359 20 H 0.046 0.954 21 C -0.073 4.073 22 N -0.939 5.939 23 Si 1.115 2.885 24 H -0.289 1.289 25 H -0.277 1.277 26 H -0.280 1.280 27 C 0.169 3.831 28 C -0.114 4.114 29 C 0.098 3.902 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.010 0.990 47 H 0.044 0.956 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 -4.115 -23.620 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.286 6.286 4 C -0.016 4.016 5 H 0.130 0.870 6 C -0.166 4.166 7 C -0.220 4.220 8 H 0.165 0.835 9 C 0.334 3.666 10 O -0.463 6.463 11 N -0.337 5.337 12 C -0.045 4.045 13 C -0.043 4.043 14 O -0.298 6.298 15 C 0.087 3.913 16 C -0.176 4.176 17 C 0.030 3.970 18 N -0.340 5.340 19 C -0.489 4.489 20 H 0.063 0.937 21 C -0.270 4.270 22 N -0.580 5.580 23 Si 0.939 3.061 24 H -0.215 1.215 25 H -0.203 1.203 26 H -0.206 1.206 27 C 0.043 3.957 28 C -0.153 4.153 29 C -0.025 4.025 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.181 -4.317 -22.357 25.823 hybrid contribution -1.112 -0.316 -0.613 1.308 sum -13.293 -4.634 -22.970 26.940 Atomic orbital electron populations 1.21769 0.92207 1.03604 1.02980 1.22774 0.96612 0.82330 1.00972 1.87784 1.18272 1.28517 1.94075 1.22598 0.82208 0.94203 1.02590 0.86987 1.23513 1.03190 1.00725 0.89169 1.22681 0.95961 1.05486 0.97876 0.83513 1.20093 0.85730 0.82912 0.77884 1.90674 1.66397 1.26601 1.62617 1.48109 1.22626 1.10365 1.52590 1.22710 1.01290 0.82459 0.97992 1.23231 0.84920 1.03765 0.92427 1.88033 1.33301 1.26173 1.82306 1.21478 0.94155 0.82940 0.92751 1.22302 0.99499 0.98973 0.96831 1.20809 0.87021 0.96774 0.92409 1.44334 1.07702 1.65263 1.16728 1.20189 1.26935 1.07560 0.94177 0.93657 1.27238 1.01008 0.96704 1.02034 1.70889 1.44540 1.05659 1.36937 0.82860 0.75759 0.73832 0.73620 1.21516 1.20251 1.20612 1.20713 0.91994 0.92648 0.90333 1.21995 0.94735 1.01720 0.96880 1.22199 0.85999 1.02494 0.91781 0.92405 0.91490 0.89131 0.91793 0.93394 0.84829 0.87193 0.88612 0.85789 0.85420 0.93211 0.92824 0.91178 0.93988 0.96518 0.93597 0.97234 0.93784 0.91202 0.89908 0.89389 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.71 6.53 71.98 0.47 1.18 16 3 O -0.37 -6.85 10.60 -148.98 -1.58 -8.43 16 4 C 0.04 0.79 5.96 30.59 0.18 0.98 16 5 H 0.11 2.33 7.45 -2.39 -0.02 2.31 16 6 C -0.13 -1.76 10.18 30.59 0.31 -1.45 16 7 C -0.20 -3.59 5.13 -11.54 -0.06 -3.64 16 8 H 0.15 2.13 6.55 -2.38 -0.02 2.12 16 9 C 0.54 13.77 7.50 87.66 0.66 14.43 16 10 O -0.58 -19.35 15.73 -3.03 -0.05 -19.40 16 11 N -0.60 -14.37 2.52 -817.37 -2.06 -16.44 16 12 C 0.08 1.31 6.55 86.35 0.57 1.88 16 13 C 0.03 0.75 6.60 72.08 0.48 1.22 16 14 O -0.38 -12.16 9.00 -148.98 -1.34 -13.50 16 15 C 0.13 4.23 0.68 -10.71 -0.01 4.22 16 16 C -0.14 -5.02 4.33 30.65 0.13 -4.89 16 17 C 0.16 6.91 6.28 86.36 0.54 7.46 16 18 N -0.62 -32.32 2.83 -698.21 -1.97 -34.29 16 19 C -0.36 -20.87 9.48 84.03 0.80 -20.07 16 20 H 0.05 2.66 7.94 -2.91 -0.02 2.63 16 21 C -0.07 -4.27 4.69 84.86 0.40 -3.87 16 22 N -0.94 -58.45 12.45 21.65 0.27 -58.18 16 23 Si 1.12 52.12 29.98 68.60 2.06 54.18 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.17 8.28 4.49 86.51 0.39 8.67 16 28 C -0.11 -4.35 5.12 30.80 0.16 -4.19 16 29 C 0.10 2.78 5.29 86.35 0.46 3.24 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.36 5.59 -2.38 -0.01 1.35 16 39 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.21 6.29 -2.39 -0.02 1.19 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.31 6.16 -2.38 -0.01 2.29 16 43 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 44 H 0.02 0.76 7.83 -2.39 -0.02 0.74 16 45 H 0.25 16.22 6.72 -92.71 -0.62 15.60 16 46 H 0.01 0.50 7.54 -2.39 -0.02 0.48 16 47 H 0.04 2.43 6.38 -2.38 -0.02 2.41 16 48 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 49 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 50 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 51 H 0.08 2.65 7.07 -2.39 -0.02 2.63 16 Total: -1.00 -75.20 392.80 2.59 -72.61 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.06 Total: 19.18 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.21 Total: 4.26 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.77 Total: -108.91 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -2.97 Total: -41.33 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.06 Total: 54.18 kcal Total: -75.20 2.59 -72.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949038411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.395 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds