Wall clock time and date at job start Tue Mar 31 2020 21:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47103 * 2 1 4 4 C 1.42897 * 114.00228 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55801 * 4.31322 * 4 3 2 6 6 C 1.52995 * 117.50218 * 218.62053 * 4 3 2 7 7 C 1.52997 * 60.00447 * 252.51049 * 6 4 3 8 8 H 1.09006 * 117.49875 * 252.49264 * 7 6 4 9 9 C 1.50695 * 117.50335 * 107.48692 * 7 6 4 10 10 O 1.21281 * 120.00072 * 291.39761 * 9 7 6 11 11 N 1.34771 * 119.99978 * 111.39291 * 9 7 6 12 12 C 1.47157 * 120.99135 * 0.02562 * 11 9 7 13 13 C 1.53294 * 108.37396 * 230.57493 * 12 11 9 14 14 O 1.42963 * 109.23053 * 307.64966 * 13 12 11 15 15 C 1.42892 * 114.21168 * 62.49079 * 14 13 12 16 16 C 1.52982 * 109.56551 * 57.47380 * 15 14 13 17 17 C 1.53193 * 109.35034 * 59.05838 * 16 15 14 18 18 N 1.46934 * 108.77709 * 54.57100 * 17 16 15 19 19 C 1.36931 * 120.64419 * 126.29983 * 18 17 16 20 20 H 1.08004 * 120.00382 * 332.44111 * 19 18 17 21 21 C 1.38814 * 119.99835 * 152.44164 * 19 18 17 22 22 N 1.31617 * 120.00070 * 342.76341 * 21 19 18 23 23 Si 1.86800 * 119.99982 * 162.48984 * 21 19 18 24 24 H 1.48498 * 109.47450 * 59.99970 * 23 21 19 25 25 H 1.48503 * 109.47191 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47174 * 299.99653 * 23 21 19 27 27 C 1.46931 * 118.70694 * 306.57108 * 18 17 16 28 28 C 1.52756 * 109.00342 * 53.39045 * 27 18 17 29 29 C 1.47155 * 120.98701 * 179.97438 * 11 9 7 30 30 H 1.09001 * 109.46617 * 60.00609 * 1 2 3 31 31 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47709 * 300.00463 * 1 2 3 33 33 H 1.08995 * 109.47266 * 239.99244 * 2 1 3 34 34 H 1.09001 * 109.46617 * 119.99391 * 2 1 3 35 35 H 1.09004 * 117.50182 * 145.02307 * 6 4 3 36 36 H 1.09003 * 117.52055 * 359.97438 * 6 4 3 37 37 H 1.08998 * 109.68562 * 110.85050 * 12 11 9 38 38 H 1.08998 * 109.71200 * 350.31558 * 12 11 9 39 39 H 1.08997 * 109.50545 * 187.72314 * 13 12 11 40 40 H 1.08997 * 109.50719 * 67.58247 * 13 12 11 41 41 H 1.08995 * 109.49315 * 299.09243 * 16 15 14 42 42 H 1.09007 * 109.51008 * 179.03092 * 16 15 14 43 43 H 1.08995 * 109.58655 * 294.77834 * 17 16 15 44 44 H 1.09008 * 109.70061 * 174.42468 * 17 16 15 45 45 H 0.97006 * 120.00096 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.58446 * 173.22327 * 27 18 17 47 47 H 1.09004 * 109.58963 * 293.64921 * 27 18 17 48 48 H 1.08994 * 109.56223 * 185.58734 * 28 27 18 49 49 H 1.08999 * 109.37319 * 65.57101 * 28 27 18 50 50 H 1.08996 * 109.67728 * 9.81032 * 29 11 9 51 51 H 1.09005 * 109.67611 * 249.26632 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5197 -0.0730 6 6 4.0510 2.5730 0.8477 7 6 4.0426 2.6875 -0.6780 8 1 4.9914 2.5549 -1.1979 9 6 3.0967 3.6848 -1.2958 10 8 1.8995 3.4982 -1.2431 11 7 3.5812 4.7840 -1.9067 12 6 5.0297 5.0318 -1.9837 13 6 5.3024 6.4591 -1.4954 14 8 4.4644 7.3698 -2.2111 15 6 3.0654 7.1637 -2.0059 16 6 2.7464 7.2636 -0.5130 17 6 3.1602 8.6453 0.0031 18 7 2.5116 9.6726 -0.8233 19 6 1.7622 10.6624 -0.2457 20 1 1.2704 10.4857 0.6995 21 6 1.6347 11.8932 -0.8749 22 7 2.4781 12.2371 -1.8250 23 14 0.2614 13.0581 -0.3785 24 1 0.4003 13.4030 1.0592 25 1 0.3428 14.2958 -1.1950 26 1 -1.0511 12.4014 -0.6055 27 6 2.6779 9.6136 -2.2820 28 6 2.2737 8.2247 -2.7729 29 6 2.6774 5.7716 -2.5177 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.0054 2.3649 1.3315 36 1 3.3727 3.2196 1.4044 37 1 5.3660 4.9261 -3.0151 38 1 5.5587 4.3197 -1.3503 39 1 6.3480 6.7107 -1.6722 40 1 5.0863 6.5265 -0.4291 41 1 3.2957 6.4935 0.0286 42 1 1.6764 7.1233 -0.3592 43 1 4.2428 8.7515 -0.0647 44 1 2.8461 8.7592 1.0408 45 1 2.3891 13.0973 -2.2645 46 1 2.0439 10.3648 -2.7527 47 1 3.7208 9.7997 -2.5388 48 1 2.4867 8.1378 -3.8382 49 1 1.2073 8.0770 -2.6020 50 1 1.6479 5.5506 -2.2361 51 1 2.7769 5.7383 -3.6027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949038413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:28 Heat of formation + Delta-G solvation = -56.512025 kcal Electronic energy + Delta-G solvation = -31473.966244 eV Core-core repulsion = 27375.864919 eV Total energy + Delta-G solvation = -4098.101325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67584 -39.33311 -37.88204 -36.14083 -35.32573 -34.43420 -32.93635 -31.16561 -30.92853 -29.78272 -28.72686 -27.27272 -24.73557 -23.53705 -23.22846 -23.06817 -22.37400 -22.08114 -20.69776 -19.02036 -18.76377 -17.94495 -16.88136 -16.47074 -16.06653 -15.72702 -15.48301 -15.17132 -15.00257 -14.79133 -14.65780 -14.34815 -13.93344 -13.55385 -13.32416 -13.26588 -13.07912 -12.91350 -12.81305 -12.58974 -12.35625 -12.31559 -11.87364 -11.65832 -11.45221 -11.39732 -11.30541 -11.18718 -10.99312 -10.76052 -10.73197 -10.60697 -10.34930 -10.19994 -10.00406 -9.80098 -9.65783 -9.46519 -9.31572 -9.24177 -8.38547 -8.29835 -6.58100 -5.71578 -3.13090 2.50805 2.88769 3.26504 3.42994 3.48474 3.50346 3.62830 4.05202 4.29140 4.49524 4.55663 4.63399 4.75363 4.84517 4.85821 4.93726 5.05292 5.10505 5.12597 5.16226 5.19650 5.36291 5.38276 5.44760 5.47594 5.52048 5.61087 5.70022 5.71607 5.74849 5.75626 5.88203 5.96822 5.97559 6.12093 6.34758 6.38479 6.43487 6.59405 6.63166 6.74975 6.80759 7.06321 7.07262 7.42479 7.47610 7.63353 7.79466 7.86140 8.29147 8.52328 9.29141 9.92848 10.50777 11.36852 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.002867 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.472088 B = 9763.840431 C =10573.300872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.051 3.949 5 H 0.116 0.884 6 C -0.159 4.159 7 C -0.197 4.197 8 H 0.127 0.873 9 C 0.542 3.458 10 O -0.513 6.513 11 N -0.611 5.611 12 C 0.075 3.925 13 C 0.044 3.956 14 O -0.356 6.356 15 C 0.119 3.881 16 C -0.151 4.151 17 C 0.153 3.847 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.063 0.937 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.178 3.822 28 C -0.126 4.126 29 C 0.091 3.909 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.049 0.951 45 H 0.254 0.746 46 H 0.086 0.914 47 H 0.027 0.973 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -24.379 1.028 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.009 4.009 5 H 0.134 0.866 6 C -0.197 4.197 7 C -0.218 4.218 8 H 0.144 0.856 9 C 0.329 3.671 10 O -0.387 6.387 11 N -0.346 5.346 12 C -0.049 4.049 13 C -0.034 4.034 14 O -0.275 6.275 15 C 0.079 3.921 16 C -0.191 4.191 17 C 0.027 3.973 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.052 3.948 28 C -0.166 4.166 29 C -0.031 4.031 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.115 0.885 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.692 -24.004 0.846 24.684 hybrid contribution -0.328 0.192 0.273 0.468 sum 5.364 -23.812 1.120 24.435 Atomic orbital electron populations 1.21707 0.93533 1.01879 1.03616 1.22538 0.95975 0.83970 0.99606 1.88197 1.16939 1.25397 1.93526 1.22540 0.83726 0.92830 1.01781 0.86606 1.23433 1.03087 1.02417 0.90775 1.22782 1.01317 1.00319 0.97419 0.85551 1.19459 0.88481 0.80994 0.78131 1.90756 1.15385 1.75028 1.57563 1.48082 1.07055 1.22396 1.57090 1.22460 0.81205 0.98843 1.02356 1.22886 0.95716 0.87869 0.96967 1.88069 1.16011 1.54621 1.68786 1.21763 0.81665 0.92831 0.95883 1.22498 1.01707 0.99758 0.95087 1.20762 0.95154 0.87188 0.94234 1.44010 1.57514 1.28696 1.01087 1.19140 1.22150 0.90765 1.06107 0.91882 1.25022 0.98479 0.96435 0.99704 1.70036 1.35208 1.21457 1.27898 0.86392 0.82482 0.80175 0.77852 1.20972 1.21667 1.21065 1.20592 0.99310 0.91101 0.83792 1.22128 0.98393 0.98028 0.98050 1.22447 0.95465 0.87948 0.97287 0.91554 0.91292 0.91800 0.93533 0.93540 0.87091 0.87470 0.90903 0.89288 0.88265 0.92292 0.93081 0.91487 0.96196 0.93201 0.93645 0.89558 0.95491 0.92364 0.91210 0.88489 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.51 6.53 37.16 0.24 0.75 16 3 O -0.32 -4.14 8.48 -57.36 -0.49 -4.62 16 4 C 0.05 0.49 6.40 -26.73 -0.17 0.32 16 5 H 0.12 0.73 7.93 -51.93 -0.41 0.32 16 6 C -0.16 -1.42 10.18 -26.74 -0.27 -1.69 16 7 C -0.20 -1.99 4.95 -91.77 -0.45 -2.44 16 8 H 0.13 0.90 6.90 -51.93 -0.36 0.55 16 9 C 0.54 7.83 7.50 -10.99 -0.08 7.75 16 10 O -0.51 -9.44 14.39 -16.57 -0.24 -9.68 16 11 N -0.61 -8.42 2.52 -172.27 -0.43 -8.85 16 12 C 0.07 0.80 6.48 -3.53 -0.02 0.78 16 13 C 0.04 0.56 6.60 37.31 0.25 0.81 16 14 O -0.36 -6.22 9.01 -35.23 -0.32 -6.54 16 15 C 0.12 2.10 0.68 -90.47 -0.06 2.04 16 16 C -0.15 -2.83 4.33 -26.64 -0.12 -2.95 16 17 C 0.15 3.37 6.29 -3.71 -0.02 3.35 16 18 N -0.59 -15.24 3.00 -172.57 -0.52 -15.76 16 19 C -0.25 -7.09 9.58 -15.06 -0.14 -7.23 16 20 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 23 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.18 4.37 5.05 -3.93 -0.02 4.35 16 28 C -0.13 -2.50 5.09 -26.86 -0.14 -2.64 16 29 C 0.09 1.43 5.30 -3.52 -0.02 1.42 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.69 5.83 -51.93 -0.30 0.39 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.80 6.29 -51.93 -0.33 0.47 16 41 H 0.05 0.88 6.15 -51.93 -0.32 0.56 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 44 H 0.05 1.09 7.93 -51.92 -0.41 0.67 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 47 H 0.03 0.71 7.83 -51.93 -0.41 0.31 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 50 H 0.10 1.68 7.07 -51.93 -0.37 1.31 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -34.43 391.49 -9.91 -44.34 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.67 Total: 0.52 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.74 Total: 3.62 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.33 Total: -50.61 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.04 Total: -20.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.43 -9.91 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949038413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.175 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds