Wall clock time and date at job start Tue Mar 31 2020 21:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47103 * 2 1 4 4 C 1.42897 * 114.00228 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55801 * 4.31322 * 4 3 2 6 6 C 1.52995 * 117.50218 * 218.62053 * 4 3 2 7 7 C 1.52997 * 60.00447 * 252.51049 * 6 4 3 8 8 H 1.09006 * 117.49875 * 252.49264 * 7 6 4 9 9 C 1.50695 * 117.50335 * 107.48692 * 7 6 4 10 10 O 1.21281 * 120.00072 * 291.39761 * 9 7 6 11 11 N 1.34771 * 119.99978 * 111.39291 * 9 7 6 12 12 C 1.47157 * 120.99135 * 0.02562 * 11 9 7 13 13 C 1.53294 * 108.37396 * 230.57493 * 12 11 9 14 14 O 1.42963 * 109.23053 * 307.64966 * 13 12 11 15 15 C 1.42892 * 114.21168 * 62.49079 * 14 13 12 16 16 C 1.52982 * 109.56551 * 57.47380 * 15 14 13 17 17 C 1.53193 * 109.35034 * 59.05838 * 16 15 14 18 18 N 1.46934 * 108.77709 * 54.57100 * 17 16 15 19 19 C 1.36931 * 120.64419 * 126.29983 * 18 17 16 20 20 H 1.08004 * 120.00382 * 332.44111 * 19 18 17 21 21 C 1.38814 * 119.99835 * 152.44164 * 19 18 17 22 22 N 1.31617 * 120.00070 * 342.76341 * 21 19 18 23 23 Si 1.86800 * 119.99982 * 162.48984 * 21 19 18 24 24 H 1.48498 * 109.47450 * 59.99970 * 23 21 19 25 25 H 1.48503 * 109.47191 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47174 * 299.99653 * 23 21 19 27 27 C 1.46931 * 118.70694 * 306.57108 * 18 17 16 28 28 C 1.52756 * 109.00342 * 53.39045 * 27 18 17 29 29 C 1.47155 * 120.98701 * 179.97438 * 11 9 7 30 30 H 1.09001 * 109.46617 * 60.00609 * 1 2 3 31 31 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47709 * 300.00463 * 1 2 3 33 33 H 1.08995 * 109.47266 * 239.99244 * 2 1 3 34 34 H 1.09001 * 109.46617 * 119.99391 * 2 1 3 35 35 H 1.09004 * 117.50182 * 145.02307 * 6 4 3 36 36 H 1.09003 * 117.52055 * 359.97438 * 6 4 3 37 37 H 1.08998 * 109.68562 * 110.85050 * 12 11 9 38 38 H 1.08998 * 109.71200 * 350.31558 * 12 11 9 39 39 H 1.08997 * 109.50545 * 187.72314 * 13 12 11 40 40 H 1.08997 * 109.50719 * 67.58247 * 13 12 11 41 41 H 1.08995 * 109.49315 * 299.09243 * 16 15 14 42 42 H 1.09007 * 109.51008 * 179.03092 * 16 15 14 43 43 H 1.08995 * 109.58655 * 294.77834 * 17 16 15 44 44 H 1.09008 * 109.70061 * 174.42468 * 17 16 15 45 45 H 0.97006 * 120.00096 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.58446 * 173.22327 * 27 18 17 47 47 H 1.09004 * 109.58963 * 293.64921 * 27 18 17 48 48 H 1.08994 * 109.56223 * 185.58734 * 28 27 18 49 49 H 1.08999 * 109.37319 * 65.57101 * 28 27 18 50 50 H 1.08996 * 109.67728 * 9.81032 * 29 11 9 51 51 H 1.09005 * 109.67611 * 249.26632 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5197 -0.0730 6 6 4.0510 2.5730 0.8477 7 6 4.0426 2.6875 -0.6780 8 1 4.9914 2.5549 -1.1979 9 6 3.0967 3.6848 -1.2958 10 8 1.8995 3.4982 -1.2431 11 7 3.5812 4.7840 -1.9067 12 6 5.0297 5.0318 -1.9837 13 6 5.3024 6.4591 -1.4954 14 8 4.4644 7.3698 -2.2111 15 6 3.0654 7.1637 -2.0059 16 6 2.7464 7.2636 -0.5130 17 6 3.1602 8.6453 0.0031 18 7 2.5116 9.6726 -0.8233 19 6 1.7622 10.6624 -0.2457 20 1 1.2704 10.4857 0.6995 21 6 1.6347 11.8932 -0.8749 22 7 2.4781 12.2371 -1.8250 23 14 0.2614 13.0581 -0.3785 24 1 0.4003 13.4030 1.0592 25 1 0.3428 14.2958 -1.1950 26 1 -1.0511 12.4014 -0.6055 27 6 2.6779 9.6136 -2.2820 28 6 2.2737 8.2247 -2.7729 29 6 2.6774 5.7716 -2.5177 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.0054 2.3649 1.3315 36 1 3.3727 3.2196 1.4044 37 1 5.3660 4.9261 -3.0151 38 1 5.5587 4.3197 -1.3503 39 1 6.3480 6.7107 -1.6722 40 1 5.0863 6.5265 -0.4291 41 1 3.2957 6.4935 0.0286 42 1 1.6764 7.1233 -0.3592 43 1 4.2428 8.7515 -0.0647 44 1 2.8461 8.7592 1.0408 45 1 2.3891 13.0973 -2.2645 46 1 2.0439 10.3648 -2.7527 47 1 3.7208 9.7997 -2.5388 48 1 2.4867 8.1378 -3.8382 49 1 1.2073 8.0770 -2.6020 50 1 1.6479 5.5506 -2.2361 51 1 2.7769 5.7383 -3.6027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949038413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:27 Heat of formation + Delta-G solvation = -77.955072 kcal Electronic energy + Delta-G solvation = -31474.896084 eV Core-core repulsion = 27375.864919 eV Total energy + Delta-G solvation = -4099.031166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84450 -40.43130 -38.86056 -37.77597 -36.10302 -35.66794 -34.66245 -32.93307 -31.68602 -31.54162 -30.06684 -28.66375 -26.41475 -24.68484 -24.53790 -23.77172 -23.75152 -23.05670 -22.23034 -20.52882 -19.80791 -18.98368 -18.68691 -17.48026 -17.11692 -16.90733 -16.59175 -16.41613 -16.38311 -16.00953 -15.91009 -15.67888 -15.20746 -15.15384 -14.90756 -14.83866 -14.31825 -13.97506 -13.79257 -13.56208 -13.36379 -13.29121 -13.15468 -13.07449 -13.02095 -12.90659 -12.72134 -12.60963 -12.28758 -12.11903 -12.10065 -11.87822 -11.84467 -11.74655 -11.48010 -11.41534 -11.26464 -10.80830 -10.65168 -10.52896 -10.02877 -9.47535 -8.67934 -7.87642 -5.32913 1.45284 1.48401 1.52515 1.55209 1.86875 2.50349 2.61567 2.81556 2.88798 3.26376 3.47299 3.62026 3.75625 3.80388 3.81101 3.88656 3.95077 4.04005 4.15321 4.20106 4.22764 4.29549 4.39674 4.41071 4.48294 4.50610 4.50980 4.61185 4.68159 4.68427 4.77476 4.83753 4.88819 4.89339 4.92621 4.97355 5.02094 5.02685 5.05245 5.11380 5.25902 5.27318 5.40614 5.45142 5.62791 5.78088 6.34649 6.38204 6.38247 6.45925 7.14329 7.23648 7.85178 8.38456 9.18708 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.002867 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.472088 B = 9763.840431 C =10573.300872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.367 6.367 4 C 0.042 3.958 5 H 0.155 0.845 6 C -0.150 4.150 7 C -0.202 4.202 8 H 0.166 0.834 9 C 0.533 3.467 10 O -0.563 6.563 11 N -0.613 5.613 12 C 0.078 3.922 13 C 0.034 3.966 14 O -0.380 6.380 15 C 0.128 3.872 16 C -0.135 4.135 17 C 0.154 3.846 18 N -0.608 5.608 19 C -0.268 4.268 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.190 3.810 28 C -0.119 4.119 29 C 0.100 3.900 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.046 0.954 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.002 0.998 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -27.053 1.475 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.285 6.285 4 C -0.016 4.016 5 H 0.172 0.828 6 C -0.188 4.188 7 C -0.223 4.223 8 H 0.183 0.817 9 C 0.322 3.678 10 O -0.441 6.441 11 N -0.347 5.347 12 C -0.043 4.043 13 C -0.043 4.043 14 O -0.299 6.299 15 C 0.088 3.912 16 C -0.175 4.175 17 C 0.029 3.971 18 N -0.332 5.332 19 C -0.399 4.399 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.201 1.201 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.064 3.936 28 C -0.158 4.158 29 C -0.023 4.023 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.020 0.980 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.618 -26.707 1.308 27.803 hybrid contribution -0.858 1.016 0.174 1.341 sum 6.760 -25.691 1.482 26.607 Atomic orbital electron populations 1.21744 0.94144 1.03061 1.01840 1.22707 0.95645 0.83004 1.01150 1.88154 1.19137 1.27457 1.93765 1.22994 0.82781 0.94305 1.01568 0.82796 1.23505 1.04122 1.01403 0.89742 1.22885 1.01792 0.99425 0.98159 0.81668 1.20315 0.88650 0.81430 0.77360 1.90738 1.17859 1.76187 1.59322 1.48207 1.08150 1.21732 1.56568 1.22665 0.79388 0.98065 1.04218 1.23217 0.96240 0.88632 0.96188 1.88033 1.15649 1.56600 1.69627 1.21465 0.82237 0.93152 0.94340 1.22290 1.00706 0.98029 0.96427 1.20821 0.94647 0.87917 0.93744 1.44263 1.57914 1.29101 1.01915 1.19451 1.22539 0.91572 1.06291 0.92019 1.25787 1.00575 0.98017 0.99974 1.70191 1.36740 1.21752 1.29046 0.85349 0.79536 0.77892 0.77708 1.20099 1.21678 1.20595 1.20307 0.96984 0.92981 0.83332 1.21946 0.98526 0.95963 0.99414 1.22108 0.95019 0.87304 0.97910 0.93836 0.88624 0.93011 0.92327 0.91391 0.83149 0.90513 0.89268 0.85380 0.85580 0.93077 0.91199 0.93187 0.96444 0.93571 0.93988 0.92833 0.98012 0.90502 0.91731 0.90582 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.85 6.53 71.98 0.47 1.32 16 3 O -0.37 -9.04 8.48 -127.82 -1.08 -10.13 16 4 C 0.04 0.68 6.40 30.59 0.20 0.88 16 5 H 0.15 1.21 7.93 -2.38 -0.02 1.19 16 6 C -0.15 -2.19 10.18 30.59 0.31 -1.88 16 7 C -0.20 -3.35 4.95 -11.54 -0.06 -3.41 16 8 H 0.17 1.39 6.90 -2.38 -0.02 1.37 16 9 C 0.53 14.58 7.50 87.66 0.66 15.24 16 10 O -0.56 -20.97 14.39 18.13 0.26 -20.71 16 11 N -0.61 -15.62 2.52 -817.32 -2.06 -17.69 16 12 C 0.08 1.37 6.48 86.35 0.56 1.93 16 13 C 0.03 0.79 6.60 72.08 0.48 1.26 16 14 O -0.38 -12.84 9.01 -148.98 -1.34 -14.18 16 15 C 0.13 4.52 0.68 -10.70 -0.01 4.52 16 16 C -0.14 -5.12 4.33 30.65 0.13 -4.98 16 17 C 0.15 6.92 6.29 86.36 0.54 7.46 16 18 N -0.61 -32.43 3.00 -699.90 -2.10 -34.53 16 19 C -0.27 -15.51 9.58 84.03 0.81 -14.71 16 20 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 21 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 22 N -0.93 -56.70 11.19 21.65 0.24 -56.46 16 23 Si 0.97 46.31 29.59 68.60 2.03 48.34 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 C 0.19 9.69 5.05 86.22 0.44 10.12 16 28 C -0.12 -4.82 5.09 30.51 0.16 -4.66 16 29 C 0.10 3.10 5.30 86.36 0.46 3.56 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 1.26 5.83 -2.39 -0.01 1.25 16 39 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.26 6.29 -2.39 -0.02 1.25 16 41 H 0.07 2.37 6.15 -2.39 -0.01 2.35 16 42 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.02 0.80 7.83 -2.39 -0.02 0.78 16 44 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 45 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 46 H 0.05 3.06 6.04 -2.39 -0.01 3.05 16 47 H 0.00 0.10 7.83 -2.38 -0.02 0.08 16 48 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 50 H 0.08 2.69 7.07 -2.39 -0.02 2.68 16 51 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -79.80 391.49 3.15 -76.65 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.91 Total: 16.30 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.29 Total: 12.40 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.92 Total: -108.68 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -2.16 Total: -45.02 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -79.80 3.15 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949038413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.304 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds