Wall clock time and date at job start Tue Mar 31 2020 21:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46703 * 2 1 4 4 C 1.42899 * 113.99954 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54561 * 355.58482 * 4 3 2 6 6 C 1.52997 * 117.50091 * 141.25024 * 4 3 2 7 7 C 1.52992 * 117.49988 * 209.91027 * 4 3 2 8 8 H 1.08999 * 117.49589 * 359.97438 * 7 4 3 9 9 C 1.50705 * 117.49881 * 144.99457 * 7 4 3 10 10 O 1.21281 * 119.99652 * 0.02562 * 9 7 4 11 11 N 1.34778 * 119.99849 * 180.02562 * 9 7 4 12 12 C 1.46925 * 120.64288 * 359.72142 * 11 9 7 13 13 C 1.53624 * 108.53528 * 126.29771 * 12 11 9 14 14 C 1.52995 * 109.27808 * 54.80590 * 13 12 11 15 15 C 1.52983 * 109.63269 * 298.66111 * 14 13 12 16 16 C 1.46931 * 120.64035 * 180.02562 * 11 9 7 17 17 C 1.53252 * 109.36358 * 178.71423 * 14 13 12 18 18 N 1.47150 * 108.41113 * 187.91516 * 17 14 13 19 19 C 1.36940 * 120.98999 * 230.50131 * 18 17 14 20 20 H 1.08002 * 120.00622 * 153.33249 * 19 18 17 21 21 C 1.38815 * 119.99650 * 333.33091 * 19 18 17 22 22 N 1.31617 * 120.00273 * 343.55183 * 21 19 18 23 23 Si 1.86803 * 120.00064 * 163.54749 * 21 19 18 24 24 H 1.48491 * 109.47104 * 89.99873 * 23 21 19 25 25 H 1.48495 * 109.47194 * 210.00310 * 23 21 19 26 26 H 1.48507 * 109.46964 * 329.99965 * 23 21 19 27 27 C 1.47152 * 118.02566 * 50.47485 * 18 17 14 28 28 C 1.53303 * 108.37286 * 309.40905 * 27 18 17 29 29 O 1.42901 * 109.54532 * 58.91442 * 14 13 12 30 30 H 1.09002 * 109.47166 * 60.00805 * 1 2 3 31 31 H 1.09004 * 109.46530 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47395 * 299.99951 * 1 2 3 33 33 H 1.08992 * 109.47395 * 240.00049 * 2 1 3 34 34 H 1.09002 * 109.47166 * 119.99195 * 2 1 3 35 35 H 1.08995 * 117.50233 * 215.00313 * 6 4 3 36 36 H 1.09008 * 117.49732 * 359.97438 * 6 4 3 37 37 H 1.08996 * 109.59054 * 246.12646 * 12 11 9 38 38 H 1.09002 * 109.58844 * 6.55991 * 12 11 9 39 39 H 1.09000 * 109.63098 * 294.80238 * 13 12 11 40 40 H 1.09002 * 109.45009 * 174.70018 * 13 12 11 41 41 H 1.09004 * 109.48769 * 301.24515 * 15 14 13 42 42 H 1.08994 * 109.51224 * 181.18231 * 15 14 13 43 43 H 1.08999 * 109.58890 * 353.43970 * 16 11 9 44 44 H 1.09002 * 109.58339 * 113.86235 * 16 11 9 45 45 H 1.08998 * 109.67713 * 307.64751 * 17 14 13 46 46 H 1.09003 * 109.67848 * 68.18490 * 17 14 13 47 47 H 0.97003 * 120.00318 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.68100 * 69.12971 * 27 18 17 49 49 H 1.09005 * 109.68545 * 189.68777 * 27 18 17 50 50 H 1.08996 * 109.51174 * 172.27850 * 28 27 18 51 51 H 1.08999 * 109.50904 * 292.37638 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9768 0.5199 0.0767 6 6 4.0518 2.5711 -0.8487 7 6 4.0418 2.6889 0.6773 8 1 3.3571 3.4112 1.1218 9 6 5.3526 2.5064 1.3983 10 8 5.8828 1.4160 1.4257 11 7 5.9354 3.5549 2.0125 12 6 5.3085 4.8834 1.9830 13 6 5.1679 5.3893 3.4267 14 6 6.5367 5.3553 4.1094 15 6 7.0550 3.9165 4.1504 16 6 7.2135 3.3931 2.7190 17 6 6.4046 5.8898 5.5396 18 7 7.7537 6.0278 6.1106 19 6 8.0588 5.4963 7.3352 20 1 9.0760 5.2138 7.5631 21 6 7.0606 5.3207 8.2837 22 7 5.9090 5.9438 8.1503 23 14 7.3517 4.1997 9.7494 24 1 7.9311 4.9870 10.8672 25 1 6.0618 3.6034 10.1804 26 1 8.2936 3.1176 9.3656 27 6 8.7656 6.7534 5.3263 28 6 8.7839 6.1740 3.9071 29 8 7.4544 6.1738 3.3815 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 5.0064 2.3616 -1.3314 36 1 3.3737 3.2155 -1.4084 37 1 5.9333 5.5697 1.4116 38 1 4.3234 4.8124 1.5216 39 1 4.4733 4.7507 3.9725 40 1 4.7912 6.4121 3.4178 41 1 6.3454 3.2897 4.6906 42 1 8.0204 3.8916 4.6557 43 1 7.4864 2.3381 2.7437 44 1 7.9892 3.9614 2.2057 45 1 5.9114 6.8617 5.5240 46 1 5.8216 5.1915 6.1400 47 1 5.2116 5.8214 8.8133 48 1 8.5099 7.8123 5.2873 49 1 9.7458 6.6286 5.7865 50 1 9.4261 6.7848 3.2728 51 1 9.1650 5.1532 3.9356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949311261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:57 Heat of formation + Delta-G solvation = -64.758282 kcal Electronic energy + Delta-G solvation = -31115.670495 eV Core-core repulsion = 27017.211585 eV Total energy + Delta-G solvation = -4098.458910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.50569 -39.31166 -38.21819 -36.16076 -35.24453 -34.38813 -32.32030 -31.30825 -31.16749 -30.82400 -28.29980 -26.66644 -24.86470 -23.45207 -23.24772 -23.17169 -22.47071 -22.17007 -20.77438 -19.16718 -18.57833 -17.89760 -16.88157 -16.46068 -16.11807 -15.81415 -15.51809 -15.29386 -14.98998 -14.53612 -14.37895 -14.34003 -13.82660 -13.65551 -13.58671 -13.28929 -13.00885 -12.91529 -12.78419 -12.73616 -12.41653 -12.27384 -11.99830 -11.82203 -11.54053 -11.47797 -11.22530 -11.02785 -10.96098 -10.86443 -10.74520 -10.68299 -10.57912 -10.28187 -10.19289 -9.95156 -9.76322 -9.40973 -9.37305 -9.01889 -8.53886 -8.41311 -6.72206 -5.84965 -3.28227 2.47161 2.85821 3.33192 3.36367 3.40866 3.42594 3.68809 4.31813 4.43459 4.48899 4.53604 4.71058 4.78491 4.81498 4.95649 5.04037 5.10246 5.14144 5.23705 5.32876 5.34671 5.43703 5.45657 5.49382 5.54666 5.60443 5.62516 5.66096 5.74573 5.81060 5.82140 5.87409 5.95849 5.98064 6.15313 6.21604 6.23663 6.38200 6.51422 6.55715 6.69950 6.78419 6.86683 6.94128 7.09096 7.48338 7.52206 7.70592 7.94706 8.22671 8.33455 9.11283 9.74359 10.31675 11.22784 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002927 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.938365 B = 9563.222202 C =10633.480308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.356 6.356 4 C 0.052 3.948 5 H 0.124 0.876 6 C -0.154 4.154 7 C -0.192 4.192 8 H 0.132 0.868 9 C 0.545 3.455 10 O -0.553 6.553 11 N -0.597 5.597 12 C 0.112 3.888 13 C -0.117 4.117 14 C 0.096 3.904 15 C -0.146 4.146 16 C 0.117 3.883 17 C 0.159 3.841 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.110 3.890 28 C 0.046 3.954 29 O -0.382 6.382 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.026 0.974 46 H 0.092 0.908 47 H 0.254 0.746 48 H 0.024 0.976 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -6.159 -17.951 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.275 6.275 4 C -0.007 4.007 5 H 0.141 0.859 6 C -0.192 4.192 7 C -0.213 4.213 8 H 0.150 0.850 9 C 0.333 3.667 10 O -0.432 6.432 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.156 4.156 14 C 0.055 3.945 15 C -0.184 4.184 16 C -0.005 4.005 17 C 0.033 3.967 18 N -0.316 5.316 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.016 4.016 28 C -0.032 4.032 29 O -0.301 6.301 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.111 0.889 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.965 -6.472 -17.941 19.984 hybrid contribution 0.308 -0.571 1.308 1.460 sum -5.657 -7.043 -16.633 18.928 Atomic orbital electron populations 1.21757 0.93507 1.02414 1.03228 1.22572 0.95544 0.83216 1.00580 1.87811 1.18574 1.27137 1.93980 1.22592 0.81936 0.94384 1.01774 0.85881 1.23429 1.02927 1.02058 0.90793 1.22720 0.97753 1.04317 0.96556 0.85045 1.19511 0.84993 0.83748 0.78468 1.90659 1.65368 1.25307 1.61828 1.48038 1.23198 1.09247 1.52439 1.21861 0.98108 0.83155 0.97945 1.21927 0.96398 1.02357 0.94876 1.22140 0.88259 0.89283 0.94809 1.22324 1.04002 0.96943 0.95112 1.21631 0.84225 1.02018 0.92634 1.21359 0.87631 0.99388 0.88369 1.44043 1.07372 1.62369 1.17858 1.19149 0.94918 1.34470 0.89649 0.91533 1.25030 0.97359 0.99696 0.97448 1.70012 1.05951 1.42515 1.36221 0.86314 0.77163 0.80762 0.82671 1.21353 1.21496 1.20429 1.21587 0.94167 0.94786 0.91108 1.23007 0.83929 0.99998 0.96276 1.87764 1.19496 1.68690 1.54174 0.91835 0.90921 0.91678 0.93007 0.92846 0.87572 0.87145 0.90417 0.90023 0.90343 0.90024 0.91182 0.89207 0.89660 0.91421 0.95570 0.88947 0.93552 0.95771 0.92180 0.90322 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.49 6.53 37.16 0.24 0.74 16 3 O -0.36 -3.99 10.60 -35.23 -0.37 -4.36 16 4 C 0.05 0.58 5.95 -26.74 -0.16 0.42 16 5 H 0.12 1.41 7.45 -51.93 -0.39 1.03 16 6 C -0.15 -1.48 10.19 -26.70 -0.27 -1.75 16 7 C -0.19 -2.25 5.07 -91.74 -0.47 -2.72 16 8 H 0.13 1.43 6.58 -51.93 -0.34 1.08 16 9 C 0.54 8.10 7.48 -10.98 -0.08 8.01 16 10 O -0.55 -9.85 15.67 5.56 0.09 -9.76 16 11 N -0.60 -8.72 2.96 -172.47 -0.51 -9.23 16 12 C 0.11 1.44 6.14 -3.49 -0.02 1.42 16 13 C -0.12 -1.78 5.12 -26.41 -0.14 -1.91 16 14 C 0.10 1.75 0.68 -90.50 -0.06 1.69 16 15 C -0.15 -2.60 4.33 -26.62 -0.12 -2.72 16 16 C 0.12 1.84 6.20 -3.69 -0.02 1.82 16 17 C 0.16 3.64 4.09 -3.56 -0.01 3.63 16 18 N -0.59 -14.36 2.55 -171.85 -0.44 -14.80 16 19 C -0.25 -6.72 9.65 -15.06 -0.15 -6.87 16 20 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 22 N -0.90 -25.60 11.14 55.49 0.62 -24.98 16 23 Si 0.90 21.39 29.58 -169.99 -5.03 16.37 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.11 2.24 6.73 -3.53 -0.02 2.22 16 28 C 0.05 0.79 6.60 37.31 0.25 1.04 16 29 O -0.38 -6.86 8.99 -35.23 -0.32 -7.18 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.08 0.85 5.51 -51.93 -0.29 0.56 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.75 6.16 -51.93 -0.32 1.43 16 43 H 0.09 1.41 7.01 -51.93 -0.36 1.04 16 44 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.05 0.78 6.29 -51.93 -0.33 0.46 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -31.15 393.62 -9.38 -40.53 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.62 Total: 3.16 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.73 Total: 4.33 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.33 Total: -49.01 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.60 Total: -21.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.15 -9.38 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949311261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.229 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds