Wall clock time and date at job start Tue Mar 31 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46703 * 2 1 4 4 C 1.42899 * 113.99954 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54561 * 355.58482 * 4 3 2 6 6 C 1.52997 * 117.50091 * 141.25024 * 4 3 2 7 7 C 1.52992 * 117.49988 * 209.91027 * 4 3 2 8 8 H 1.08999 * 117.49589 * 359.97438 * 7 4 3 9 9 C 1.50705 * 117.49881 * 144.99457 * 7 4 3 10 10 O 1.21281 * 119.99652 * 0.02562 * 9 7 4 11 11 N 1.34778 * 119.99849 * 180.02562 * 9 7 4 12 12 C 1.46925 * 120.64288 * 359.72142 * 11 9 7 13 13 C 1.53624 * 108.53528 * 126.29771 * 12 11 9 14 14 C 1.52995 * 109.27808 * 54.80590 * 13 12 11 15 15 C 1.52983 * 109.63269 * 298.66111 * 14 13 12 16 16 C 1.46931 * 120.64035 * 180.02562 * 11 9 7 17 17 C 1.53252 * 109.36358 * 178.71423 * 14 13 12 18 18 N 1.47150 * 108.41113 * 187.91516 * 17 14 13 19 19 C 1.36940 * 120.98999 * 230.50131 * 18 17 14 20 20 H 1.08002 * 120.00622 * 153.33249 * 19 18 17 21 21 C 1.38815 * 119.99650 * 333.33091 * 19 18 17 22 22 N 1.31617 * 120.00273 * 343.55183 * 21 19 18 23 23 Si 1.86803 * 120.00064 * 163.54749 * 21 19 18 24 24 H 1.48491 * 109.47104 * 89.99873 * 23 21 19 25 25 H 1.48495 * 109.47194 * 210.00310 * 23 21 19 26 26 H 1.48507 * 109.46964 * 329.99965 * 23 21 19 27 27 C 1.47152 * 118.02566 * 50.47485 * 18 17 14 28 28 C 1.53303 * 108.37286 * 309.40905 * 27 18 17 29 29 O 1.42901 * 109.54532 * 58.91442 * 14 13 12 30 30 H 1.09002 * 109.47166 * 60.00805 * 1 2 3 31 31 H 1.09004 * 109.46530 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47395 * 299.99951 * 1 2 3 33 33 H 1.08992 * 109.47395 * 240.00049 * 2 1 3 34 34 H 1.09002 * 109.47166 * 119.99195 * 2 1 3 35 35 H 1.08995 * 117.50233 * 215.00313 * 6 4 3 36 36 H 1.09008 * 117.49732 * 359.97438 * 6 4 3 37 37 H 1.08996 * 109.59054 * 246.12646 * 12 11 9 38 38 H 1.09002 * 109.58844 * 6.55991 * 12 11 9 39 39 H 1.09000 * 109.63098 * 294.80238 * 13 12 11 40 40 H 1.09002 * 109.45009 * 174.70018 * 13 12 11 41 41 H 1.09004 * 109.48769 * 301.24515 * 15 14 13 42 42 H 1.08994 * 109.51224 * 181.18231 * 15 14 13 43 43 H 1.08999 * 109.58890 * 353.43970 * 16 11 9 44 44 H 1.09002 * 109.58339 * 113.86235 * 16 11 9 45 45 H 1.08998 * 109.67713 * 307.64751 * 17 14 13 46 46 H 1.09003 * 109.67848 * 68.18490 * 17 14 13 47 47 H 0.97003 * 120.00318 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.68100 * 69.12971 * 27 18 17 49 49 H 1.09005 * 109.68545 * 189.68777 * 27 18 17 50 50 H 1.08996 * 109.51174 * 172.27850 * 28 27 18 51 51 H 1.08999 * 109.50904 * 292.37638 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9768 0.5199 0.0767 6 6 4.0518 2.5711 -0.8487 7 6 4.0418 2.6889 0.6773 8 1 3.3571 3.4112 1.1218 9 6 5.3526 2.5064 1.3983 10 8 5.8828 1.4160 1.4257 11 7 5.9354 3.5549 2.0125 12 6 5.3085 4.8834 1.9830 13 6 5.1679 5.3893 3.4267 14 6 6.5367 5.3553 4.1094 15 6 7.0550 3.9165 4.1504 16 6 7.2135 3.3931 2.7190 17 6 6.4046 5.8898 5.5396 18 7 7.7537 6.0278 6.1106 19 6 8.0588 5.4963 7.3352 20 1 9.0760 5.2138 7.5631 21 6 7.0606 5.3207 8.2837 22 7 5.9090 5.9438 8.1503 23 14 7.3517 4.1997 9.7494 24 1 7.9311 4.9870 10.8672 25 1 6.0618 3.6034 10.1804 26 1 8.2936 3.1176 9.3656 27 6 8.7656 6.7534 5.3263 28 6 8.7839 6.1740 3.9071 29 8 7.4544 6.1738 3.3815 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 5.0064 2.3616 -1.3314 36 1 3.3737 3.2155 -1.4084 37 1 5.9333 5.5697 1.4116 38 1 4.3234 4.8124 1.5216 39 1 4.4733 4.7507 3.9725 40 1 4.7912 6.4121 3.4178 41 1 6.3454 3.2897 4.6906 42 1 8.0204 3.8916 4.6557 43 1 7.4864 2.3381 2.7437 44 1 7.9892 3.9614 2.2057 45 1 5.9114 6.8617 5.5240 46 1 5.8216 5.1915 6.1400 47 1 5.2116 5.8214 8.8133 48 1 8.5099 7.8123 5.2873 49 1 9.7458 6.6286 5.7865 50 1 9.4261 6.7848 3.2728 51 1 9.1650 5.1532 3.9356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949311261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:56 Heat of formation + Delta-G solvation = -83.684798 kcal Electronic energy + Delta-G solvation = -31116.491210 eV Core-core repulsion = 27017.211585 eV Total energy + Delta-G solvation = -4099.279625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73706 -40.59719 -39.17866 -37.49244 -36.17020 -36.11356 -33.73262 -33.19480 -32.31929 -31.65423 -29.82427 -28.40240 -26.16935 -24.98830 -24.74174 -23.80411 -23.64387 -23.07608 -22.28288 -20.55144 -19.83097 -18.91039 -18.80419 -17.50662 -17.18491 -17.16141 -16.52989 -16.49226 -16.32397 -16.12884 -15.83333 -15.52995 -15.37391 -15.29090 -14.86209 -14.62971 -14.50598 -13.94672 -13.75181 -13.59807 -13.48674 -13.33675 -13.18539 -13.12697 -13.03063 -12.78034 -12.71431 -12.40631 -12.31082 -12.22943 -12.17189 -12.13593 -11.88974 -11.73017 -11.67707 -11.60060 -11.09383 -10.80404 -10.70686 -10.44489 -10.20182 -9.67532 -8.69049 -7.90596 -5.36792 1.38700 1.42127 1.44547 1.53062 1.83554 2.45541 2.50686 2.80795 2.90334 3.23088 3.47043 3.53979 3.68421 3.82868 3.92539 3.95340 3.99256 4.04568 4.13023 4.17944 4.28569 4.33252 4.35165 4.44110 4.45169 4.49459 4.54433 4.57601 4.68122 4.75119 4.79911 4.81036 4.90585 4.90872 4.95620 4.98829 5.01772 5.02693 5.08899 5.14594 5.27301 5.27547 5.33370 5.49795 5.56596 5.62281 6.18694 6.29908 6.38295 6.43922 7.07635 7.07691 7.77169 8.30487 9.14316 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002927 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.938365 B = 9563.222202 C =10633.480308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.044 3.956 5 H 0.114 0.886 6 C -0.129 4.129 7 C -0.201 4.201 8 H 0.144 0.856 9 C 0.542 3.458 10 O -0.588 6.588 11 N -0.599 5.599 12 C 0.120 3.880 13 C -0.116 4.116 14 C 0.107 3.893 15 C -0.135 4.135 16 C 0.127 3.873 17 C 0.168 3.832 18 N -0.611 5.611 19 C -0.259 4.259 20 H 0.069 0.931 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.104 3.896 28 C 0.052 3.948 29 O -0.377 6.377 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.080 0.920 45 H -0.003 1.003 46 H 0.058 0.942 47 H 0.250 0.750 48 H 0.016 0.984 49 H 0.067 0.933 50 H 0.117 0.883 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -6.325 -20.391 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.288 6.288 4 C -0.015 4.015 5 H 0.132 0.868 6 C -0.166 4.166 7 C -0.222 4.222 8 H 0.161 0.839 9 C 0.332 3.668 10 O -0.469 6.469 11 N -0.331 5.331 12 C -0.002 4.002 13 C -0.155 4.155 14 C 0.066 3.934 15 C -0.173 4.173 16 C 0.005 3.995 17 C 0.042 3.958 18 N -0.335 5.335 19 C -0.389 4.389 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.790 3.210 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.196 1.196 27 C -0.021 4.021 28 C -0.025 4.025 29 O -0.296 6.296 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.015 0.985 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.085 0.915 50 H 0.135 0.865 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.971 -6.620 -20.407 22.269 hybrid contribution 0.358 -0.493 2.099 2.186 sum -5.614 -7.113 -18.308 20.427 Atomic orbital electron populations 1.21771 0.92284 1.03589 1.02936 1.22776 0.96568 0.82354 1.00996 1.87790 1.18393 1.28538 1.94084 1.22597 0.82106 0.94199 1.02560 0.86819 1.23519 1.03195 1.00724 0.89194 1.22702 0.96217 1.05382 0.97944 0.83864 1.20048 0.85684 0.83019 0.78040 1.90641 1.66526 1.26626 1.63140 1.48117 1.22786 1.10070 1.52083 1.21944 0.99957 0.82151 0.96102 1.21930 0.94158 1.03035 0.96350 1.21905 0.90192 0.89065 0.92204 1.22156 1.02339 0.96442 0.96411 1.21420 0.85418 1.01438 0.91234 1.21160 0.86694 0.97079 0.90913 1.44307 1.08384 1.62987 1.17810 1.19465 0.94985 1.33857 0.90558 0.91358 1.25736 0.97365 1.01229 1.00093 1.70163 1.06676 1.44069 1.37053 0.85359 0.76749 0.79138 0.79748 1.21077 1.21991 1.19618 1.21787 0.93393 0.94124 0.92830 1.23049 0.84076 1.00782 0.94626 1.87778 1.19796 1.68517 1.53548 0.91526 0.89061 0.92507 0.91706 0.93367 0.87061 0.85001 0.89386 0.86852 0.90995 0.89213 0.93244 0.90948 0.90579 0.90215 0.98533 0.92322 0.94113 0.96633 0.91473 0.86506 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.78 6.53 71.98 0.47 1.25 16 3 O -0.37 -7.64 10.60 -148.98 -1.58 -9.22 16 4 C 0.04 0.91 5.95 30.59 0.18 1.09 16 5 H 0.11 2.54 7.45 -2.38 -0.02 2.52 16 6 C -0.13 -2.08 10.19 30.62 0.31 -1.77 16 7 C -0.20 -4.26 5.07 -11.52 -0.06 -4.32 16 8 H 0.14 2.68 6.58 -2.39 -0.02 2.66 16 9 C 0.54 15.33 7.48 87.66 0.66 15.99 16 10 O -0.59 -20.68 15.67 -3.03 -0.05 -20.73 16 11 N -0.60 -16.47 2.96 -817.97 -2.42 -18.89 16 12 C 0.12 2.76 6.14 86.51 0.53 3.29 16 13 C -0.12 -3.42 5.12 30.80 0.16 -3.26 16 14 C 0.11 3.89 0.68 -10.72 -0.01 3.88 16 15 C -0.13 -4.85 4.33 30.67 0.13 -4.72 16 16 C 0.13 3.89 6.20 86.38 0.54 4.42 16 17 C 0.17 7.96 4.09 86.34 0.35 8.31 16 18 N -0.61 -30.17 2.55 -697.61 -1.78 -31.95 16 19 C -0.26 -14.03 9.65 84.03 0.81 -13.22 16 20 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 21 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 22 N -0.93 -54.88 11.14 21.65 0.24 -54.64 16 23 Si 0.96 44.93 29.58 68.60 2.03 46.96 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 C 0.10 4.20 6.73 86.36 0.58 4.78 16 28 C 0.05 1.69 6.60 72.08 0.48 2.16 16 29 O -0.38 -12.86 8.99 -148.98 -1.34 -14.20 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.09 1.93 7.82 -2.39 -0.02 1.91 16 38 H 0.11 1.94 5.51 -2.39 -0.01 1.93 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 2.84 6.16 -2.39 -0.01 2.83 16 43 H 0.08 2.49 7.01 -2.39 -0.02 2.47 16 44 H 0.08 2.26 7.83 -2.39 -0.02 2.24 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.06 3.17 6.15 -2.39 -0.01 3.16 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 2.57 7.96 -2.38 -0.02 2.55 16 50 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 51 H 0.05 1.62 6.29 -2.39 -0.02 1.61 16 Total: -1.00 -69.28 393.62 2.30 -66.97 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.91 Total: 21.19 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.29 Total: 14.51 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.96 Total: -105.48 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -2.97 Total: -44.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.28 2.30 -66.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949311261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.711 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds