Wall clock time and date at job start Tue Mar 31 2020 21:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47490 * 2 1 4 4 C 1.42901 * 113.99983 * 180.02562 * 3 2 1 5 5 H 1.08995 * 115.55371 * 355.66262 * 4 3 2 6 6 C 1.53001 * 117.51706 * 141.36883 * 4 3 2 7 7 C 1.53001 * 117.49559 * 209.99710 * 4 3 2 8 8 H 1.09001 * 117.50015 * 144.99785 * 7 4 3 9 9 C 1.50696 * 117.50017 * 359.97438 * 7 4 3 10 10 O 1.21285 * 120.00147 * 0.09030 * 9 7 4 11 11 N 1.34775 * 120.00223 * 180.09028 * 9 7 4 12 12 C 1.46927 * 120.64429 * 359.71649 * 11 9 7 13 13 C 1.52757 * 109.00447 * 233.66683 * 12 11 9 14 14 C 1.52995 * 109.41879 * 305.63406 * 13 12 11 15 15 C 1.52981 * 109.63495 * 61.08643 * 14 13 12 16 16 C 1.46940 * 120.64529 * 180.02562 * 11 9 7 17 17 C 1.53261 * 109.35912 * 181.02334 * 14 13 12 18 18 N 1.47152 * 108.40877 * 172.09061 * 17 14 13 19 19 C 1.36937 * 120.99124 * 129.51712 * 18 17 14 20 20 H 1.07995 * 120.00281 * 206.21297 * 19 18 17 21 21 C 1.38807 * 119.99636 * 26.21219 * 19 18 17 22 22 N 1.31616 * 120.00424 * 16.90258 * 21 19 18 23 23 Si 1.86807 * 120.00040 * 196.90348 * 21 19 18 24 24 H 1.48498 * 109.46789 * 59.99879 * 23 21 19 25 25 H 1.48493 * 109.47264 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46915 * 300.00154 * 23 21 19 27 27 C 1.47158 * 118.02334 * 309.51705 * 18 17 14 28 28 C 1.53298 * 108.37210 * 50.59701 * 27 18 17 29 29 O 1.42900 * 109.55060 * 300.81991 * 14 13 12 30 30 H 1.09004 * 109.46727 * 59.99940 * 1 2 3 31 31 H 1.08993 * 109.47730 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47118 * 300.00812 * 1 2 3 33 33 H 1.09000 * 109.47135 * 239.99563 * 2 1 3 34 34 H 1.09001 * 109.46660 * 119.99531 * 2 1 3 35 35 H 1.08998 * 117.49945 * 359.97438 * 6 4 3 36 36 H 1.08997 * 117.49663 * 214.96607 * 6 4 3 37 37 H 1.09006 * 109.59030 * 353.49998 * 12 11 9 38 38 H 1.09002 * 109.58821 * 113.92406 * 12 11 9 39 39 H 1.09000 * 109.55871 * 185.59057 * 13 12 11 40 40 H 1.09001 * 109.35967 * 65.55908 * 13 12 11 41 41 H 1.09003 * 109.49301 * 178.83402 * 15 14 13 42 42 H 1.09003 * 109.49241 * 58.76302 * 15 14 13 43 43 H 1.09002 * 109.58483 * 246.08446 * 16 11 9 44 44 H 1.08991 * 109.58765 * 6.36654 * 16 11 9 45 45 H 1.09003 * 109.67677 * 291.81937 * 17 14 13 46 46 H 1.08995 * 109.67734 * 52.36263 * 17 14 13 47 47 H 0.97002 * 120.00535 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.68249 * 290.88125 * 27 18 17 49 49 H 1.08996 * 109.71809 * 170.33465 * 27 18 17 50 50 H 1.09000 * 109.50764 * 187.72809 * 28 27 18 51 51 H 1.08999 * 109.54814 * 67.60602 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9770 0.5196 0.0734 6 6 4.0516 2.5726 -0.8478 7 6 4.0427 2.6873 0.6779 8 1 4.9912 2.5544 1.1982 9 6 3.0968 3.6850 1.2950 10 8 1.8996 3.4978 1.2437 11 7 3.5812 4.7854 1.9041 12 6 5.0291 5.0233 1.9800 13 6 5.4191 5.2567 3.4384 14 6 4.5648 6.3852 4.0190 15 6 3.0877 5.9902 3.9681 16 6 2.6718 5.7671 2.5110 17 6 4.9747 6.6355 5.4745 18 7 4.2806 7.8420 5.9519 19 6 3.5833 7.8344 7.1304 20 1 2.7623 8.5207 7.2765 21 6 3.9317 6.9447 8.1372 22 7 5.1057 6.3501 8.1129 23 14 2.7343 6.5909 9.5267 24 1 1.4798 6.0265 8.9673 25 1 3.3411 5.6144 10.4665 26 1 2.4303 7.8512 10.2510 27 6 4.3580 9.0569 5.1252 28 6 3.9751 8.6882 3.6873 29 8 4.7676 7.5782 3.2589 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.3734 3.2185 -1.4053 36 1 5.0060 2.3641 -1.3312 37 1 5.5629 4.1543 1.5950 38 1 5.2863 5.9033 1.3905 39 1 6.4723 5.5318 3.4950 40 1 5.2505 4.3428 4.0082 41 1 2.4830 6.7870 4.4011 42 1 2.9374 5.0707 4.5338 43 1 2.7337 6.7087 1.9654 44 1 1.6499 5.3901 2.4743 45 1 4.6896 5.7810 6.0882 46 1 6.0528 6.7856 5.5315 47 1 5.3490 5.7280 8.8163 48 1 5.3743 9.4503 5.1450 49 1 3.6663 9.8072 5.5083 50 1 4.1575 9.5401 3.0322 51 1 2.9197 8.4186 3.6487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949311262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:59 Heat of formation + Delta-G solvation = -78.950878 kcal Electronic energy + Delta-G solvation = -31439.861479 eV Core-core repulsion = 27340.787131 eV Total energy + Delta-G solvation = -4099.074347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66471 -40.53131 -38.96711 -37.36688 -36.16064 -36.06869 -33.68118 -33.19235 -32.31657 -31.60034 -29.81900 -28.39041 -26.12701 -24.97041 -24.69650 -23.75022 -23.58944 -22.99075 -22.24252 -20.52798 -19.80030 -18.84163 -18.74289 -17.46490 -17.17923 -16.66996 -16.46925 -16.39078 -16.34230 -16.15915 -15.79012 -15.45185 -15.36170 -15.27882 -14.76384 -14.61521 -14.42684 -13.90397 -13.82801 -13.59134 -13.41745 -13.31384 -13.17723 -13.12191 -12.98490 -12.75916 -12.71443 -12.41409 -12.28537 -12.20247 -12.14336 -12.08436 -11.84386 -11.71626 -11.65731 -11.38192 -11.02990 -10.72541 -10.61397 -10.43402 -10.00337 -9.57308 -8.69673 -7.90528 -5.36325 1.42634 1.45374 1.51332 1.58029 2.02861 2.45622 2.63335 2.88833 2.92542 3.22783 3.51840 3.55103 3.83690 3.84913 3.92576 3.97228 4.01904 4.12115 4.18837 4.20929 4.30251 4.35937 4.39119 4.44573 4.50523 4.51411 4.56143 4.59769 4.68297 4.76981 4.82062 4.85171 4.90725 4.93540 4.96866 5.00594 5.02841 5.05572 5.10690 5.14848 5.26177 5.27955 5.34534 5.53649 5.58952 5.63596 6.29636 6.41902 6.43870 6.53174 7.07674 7.29609 7.77092 8.30298 9.14227 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.003106 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.374921 B = 9012.328831 C =10044.928005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.364 6.364 4 C 0.039 3.961 5 H 0.151 0.849 6 C -0.140 4.140 7 C -0.208 4.208 8 H 0.158 0.842 9 C 0.532 3.468 10 O -0.569 6.569 11 N -0.607 5.607 12 C 0.122 3.878 13 C -0.116 4.116 14 C 0.107 3.893 15 C -0.133 4.133 16 C 0.129 3.871 17 C 0.168 3.832 18 N -0.611 5.611 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.105 3.895 28 C 0.052 3.948 29 O -0.378 6.378 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.059 0.941 46 H -0.002 1.002 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.066 0.934 50 H 0.117 0.883 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -10.238 -20.014 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.283 6.283 4 C -0.020 4.020 5 H 0.168 0.832 6 C -0.177 4.177 7 C -0.229 4.229 8 H 0.176 0.824 9 C 0.321 3.679 10 O -0.447 6.447 11 N -0.340 5.340 12 C 0.000 4.000 13 C -0.154 4.154 14 C 0.066 3.934 15 C -0.171 4.171 16 C 0.007 3.993 17 C 0.042 3.958 18 N -0.335 5.335 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.200 1.200 27 C -0.021 4.021 28 C -0.025 4.025 29 O -0.297 6.297 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.059 0.941 48 H 0.035 0.965 49 H 0.085 0.915 50 H 0.134 0.866 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.190 -10.245 -20.061 22.526 hybrid contribution -0.622 0.099 1.991 2.088 sum -0.432 -10.146 -18.070 20.728 Atomic orbital electron populations 1.21735 0.93969 1.03052 1.01911 1.22709 0.95784 0.83109 1.01023 1.88139 1.19045 1.27306 1.93795 1.22988 0.82788 0.94300 1.01944 0.83224 1.23492 1.04010 1.00890 0.89317 1.22891 1.01708 0.99695 0.98614 0.82435 1.20264 0.88596 0.81261 0.77756 1.90710 1.17762 1.76254 1.60009 1.48196 1.08196 1.21921 1.55707 1.21727 0.78779 1.03751 0.95747 1.21789 1.00392 0.96372 0.96878 1.21923 0.93889 0.85652 0.91911 1.22119 0.97735 1.01156 0.96129 1.21286 0.93669 0.92059 0.92334 1.21171 0.92904 0.90397 0.91335 1.44306 1.60573 1.06864 1.21775 1.19438 1.08491 1.19311 0.91852 0.91457 1.25708 0.97305 1.01668 0.99615 1.70156 1.19991 1.32600 1.35112 0.85424 0.78694 0.77748 0.79122 1.20780 1.21877 1.20036 1.21773 0.98542 0.89608 0.92140 1.23040 0.94686 0.89449 0.95366 1.87774 1.65606 1.19624 1.56669 0.92548 0.88721 0.94037 0.91157 0.92897 0.89765 0.83195 0.86410 0.90055 0.89040 0.90898 0.91308 0.93393 0.90855 0.91286 0.92264 0.98378 0.94056 0.96492 0.91533 0.86559 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.05 0.92 6.53 71.98 0.47 1.39 16 3 O -0.36 -9.51 8.48 -127.82 -1.08 -10.59 16 4 C 0.04 0.71 6.40 30.60 0.20 0.90 16 5 H 0.15 1.61 7.93 -2.39 -0.02 1.59 16 6 C -0.14 -2.12 10.18 30.60 0.31 -1.81 16 7 C -0.21 -4.11 5.13 -11.54 -0.06 -4.17 16 8 H 0.16 2.11 6.56 -2.39 -0.02 2.10 16 9 C 0.53 16.08 7.48 87.66 0.66 16.73 16 10 O -0.57 -22.26 14.34 18.12 0.26 -22.01 16 11 N -0.61 -17.60 2.98 -819.77 -2.44 -20.04 16 12 C 0.12 2.82 6.09 86.22 0.52 3.34 16 13 C -0.12 -3.39 5.09 30.51 0.16 -3.23 16 14 C 0.11 3.96 0.68 -10.71 -0.01 3.95 16 15 C -0.13 -4.98 4.33 30.64 0.13 -4.85 16 16 C 0.13 4.26 6.20 86.35 0.54 4.79 16 17 C 0.17 8.03 4.10 86.34 0.35 8.38 16 18 N -0.61 -30.55 2.55 -697.61 -1.78 -32.33 16 19 C -0.26 -14.31 9.65 84.03 0.81 -13.50 16 20 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 21 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16 22 N -0.93 -54.87 11.14 21.65 0.24 -54.63 16 23 Si 0.96 45.22 29.59 68.60 2.03 47.25 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 C 0.10 4.30 6.73 86.35 0.58 4.89 16 28 C 0.05 1.74 6.60 72.08 0.48 2.22 16 29 O -0.38 -13.24 9.01 -148.98 -1.34 -14.58 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 1.84 5.51 -2.38 -0.01 1.83 16 38 H 0.08 1.85 7.83 -2.39 -0.02 1.83 16 39 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.82 6.16 -2.39 -0.01 2.81 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 2.28 7.83 -2.39 -0.02 2.27 16 44 H 0.07 2.49 7.00 -2.39 -0.02 2.47 16 45 H 0.06 3.22 6.13 -2.39 -0.01 3.20 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 50 H 0.12 3.05 8.14 -2.39 -0.02 3.04 16 51 H 0.05 1.62 6.29 -2.39 -0.02 1.60 16 Total: -1.00 -75.14 391.05 3.09 -72.05 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.91 Total: 20.09 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.30 Total: 14.79 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.98 Total: -107.00 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -2.17 Total: -47.18 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.14 3.09 -72.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949311262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.904 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds