Wall clock time and date at job start Tue Mar 31 2020 21:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47440 * 2 1 4 4 C 1.42897 * 114.00269 * 180.02562 * 3 2 1 5 5 C 1.53782 * 113.61288 * 210.00030 * 4 3 2 6 6 C 1.53780 * 87.07988 * 219.93115 * 5 4 3 7 7 C 1.50706 * 113.61728 * 139.97667 * 6 5 4 8 8 O 1.21283 * 119.99802 * 1.53156 * 7 6 5 9 9 N 1.34774 * 119.99910 * 181.52775 * 7 6 5 10 10 C 1.47083 * 125.63141 * 0.02562 * 9 7 6 11 11 C 1.54453 * 107.29763 * 180.98052 * 10 9 7 12 12 C 1.54368 * 102.86442 * 21.50807 * 11 10 9 13 13 C 1.47573 * 125.62517 * 180.02562 * 9 7 6 14 14 C 1.52360 * 110.38297 * 207.57825 * 12 11 10 15 15 N 1.47328 * 108.41098 * 286.59307 * 14 12 11 16 16 C 1.36941 * 121.07278 * 130.79180 * 15 14 12 17 17 H 1.07994 * 119.99986 * 205.68896 * 16 15 14 18 18 C 1.38812 * 119.99866 * 25.69937 * 16 15 14 19 19 N 1.31618 * 120.00143 * 16.71633 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 196.72289 * 18 16 15 21 21 H 1.48502 * 109.47045 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47368 * 119.99593 * 20 18 16 23 23 H 1.48495 * 109.47149 * 239.99802 * 20 18 16 24 24 C 1.47163 * 117.85544 * 310.82146 * 15 14 12 25 25 C 1.53279 * 108.55070 * 51.22184 * 24 15 14 26 26 O 1.41882 * 110.72347 * 83.68613 * 12 11 10 27 27 C 1.53781 * 87.17352 * 25.38935 * 6 5 4 28 28 H 1.08996 * 109.47417 * 300.00706 * 1 2 3 29 29 H 1.09000 * 109.46615 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47417 * 239.99294 * 2 1 3 32 32 H 1.09008 * 109.46917 * 119.99392 * 2 1 3 33 33 H 1.09001 * 112.85032 * 341.18590 * 4 3 2 34 34 H 1.08992 * 113.61798 * 105.38037 * 5 4 3 35 35 H 1.09000 * 113.68966 * 334.48572 * 5 4 3 36 36 H 1.09004 * 113.61389 * 270.79587 * 6 5 4 37 37 H 1.09008 * 109.87478 * 61.55384 * 10 9 7 38 38 H 1.09001 * 109.87865 * 300.40611 * 10 9 7 39 39 H 1.09000 * 110.73841 * 139.85232 * 11 10 9 40 40 H 1.09000 * 110.73553 * 263.16215 * 11 10 9 41 41 H 1.08993 * 110.38124 * 37.86711 * 13 9 7 42 42 H 1.09003 * 110.46990 * 275.56346 * 13 9 7 43 43 H 1.09001 * 109.68027 * 46.32464 * 14 12 11 44 44 H 1.09003 * 109.67897 * 166.86425 * 14 12 11 45 45 H 0.96996 * 120.00101 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.62179 * 291.50458 * 24 15 14 47 47 H 1.08991 * 109.78050 * 171.03060 * 24 15 14 48 48 H 1.09002 * 109.50856 * 187.08069 * 25 24 15 49 49 H 1.08997 * 109.51639 * 66.93178 * 25 24 15 50 50 H 1.08999 * 113.61808 * 89.16185 * 27 6 5 51 51 H 1.09005 * 113.61272 * 220.06768 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9489 2.7250 0.7039 6 6 4.9911 2.8301 -0.4220 7 6 5.2302 4.2413 -0.8937 8 8 4.6429 5.1637 -0.3691 9 7 6.0966 4.4783 -1.8984 10 6 6.8718 3.4576 -2.6201 11 6 7.7418 4.1937 -3.6626 12 6 7.8140 5.6288 -3.0983 13 6 6.4241 5.8047 -2.4562 14 6 8.0130 6.6332 -4.2266 15 7 9.4014 6.5241 -4.7071 16 6 9.6801 6.4098 -6.0430 17 1 10.5927 5.9306 -6.3651 18 6 8.7897 6.9102 -6.9830 19 7 7.8613 7.7689 -6.6183 20 14 8.9091 6.3647 -8.7655 21 1 10.0298 5.4019 -8.9146 22 1 7.6379 5.7119 -9.1697 23 1 9.1548 7.5471 -9.6296 24 6 10.4792 6.5413 -3.7051 25 6 10.1587 5.5006 -2.6264 26 8 8.8392 5.7339 -2.1233 27 6 4.0060 2.0445 -1.3036 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9281 0.5456 0.3230 34 1 4.3835 2.5318 1.6846 35 1 3.2319 3.5460 0.7131 36 1 5.9154 2.2913 -0.2130 37 1 6.1960 2.7660 -3.1232 38 1 7.5093 2.9145 -1.9224 39 1 8.7361 3.7503 -3.7177 40 1 7.2606 4.1872 -4.6405 41 1 6.4645 6.5507 -1.6626 42 1 5.6914 6.0928 -3.2100 43 1 7.3241 6.4111 -5.0416 44 1 7.8310 7.6421 -3.8562 45 1 7.2388 8.1182 -7.2751 46 1 10.5420 7.5306 -3.2521 47 1 11.4286 6.2953 -4.1804 48 1 10.8789 5.5862 -1.8126 49 1 10.2125 4.5009 -3.0574 50 1 3.3037 2.6782 -1.8452 51 1 4.4867 1.3025 -1.9411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972371304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:04 Heat of formation + Delta-G solvation = -70.571853 kcal Electronic energy + Delta-G solvation = -30769.888082 eV Core-core repulsion = 26671.177076 eV Total energy + Delta-G solvation = -4098.711005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.62369 -39.57301 -38.27241 -36.36375 -35.89013 -34.48283 -31.63774 -31.31253 -31.15402 -29.53919 -27.70746 -26.59269 -25.92742 -24.88320 -23.54692 -23.11090 -22.62382 -21.41305 -20.32222 -19.17885 -18.62878 -17.68374 -17.08376 -16.49018 -16.14949 -15.90802 -15.81857 -15.20541 -15.05323 -14.83655 -14.40558 -14.24116 -13.90155 -13.70502 -13.41106 -13.16006 -13.04464 -12.81057 -12.75478 -12.67000 -12.53115 -12.23662 -12.19814 -11.76109 -11.72155 -11.38639 -11.28205 -11.10909 -11.05453 -10.94251 -10.89159 -10.84567 -10.72363 -10.31394 -10.29518 -9.98698 -9.74183 -9.58304 -9.54185 -9.07329 -8.58286 -8.40960 -6.79552 -5.88789 -3.31497 2.75016 3.07273 3.30018 3.38435 3.40074 3.50934 4.16827 4.24215 4.34538 4.38792 4.52415 4.56902 4.72669 4.76586 4.89046 4.91737 5.04267 5.07390 5.12396 5.26420 5.30838 5.34592 5.40903 5.47766 5.56523 5.57797 5.59558 5.71779 5.76048 5.78673 5.80159 5.84631 5.86289 5.98276 6.05376 6.08171 6.14659 6.27426 6.30426 6.44321 6.49953 6.62694 6.76074 7.02656 7.02771 7.40711 7.67326 7.72314 7.90709 8.27364 8.33196 9.06122 9.69244 10.26685 11.19602 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002600 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.305066 B =10768.657098 C =11677.230390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.064 3.936 5 C -0.112 4.112 6 C -0.132 4.132 7 C 0.540 3.460 8 O -0.543 6.543 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.144 4.144 12 C 0.085 3.915 13 C 0.123 3.877 14 C 0.163 3.837 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.374 6.374 27 C -0.137 4.137 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.095 0.905 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -16.522 11.899 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.006 3.994 5 C -0.150 4.150 6 C -0.153 4.153 7 C 0.328 3.672 8 O -0.421 6.421 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.182 4.182 12 C 0.043 3.957 13 C 0.001 3.999 14 C 0.037 3.963 15 N -0.316 5.316 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.217 1.217 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.293 6.293 27 C -0.175 4.175 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.113 0.887 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.402 -15.761 12.300 21.319 hybrid contribution 0.497 -0.531 -1.336 1.521 sum -6.905 -16.292 10.964 20.816 Atomic orbital electron populations 1.21752 0.93835 1.02146 1.03253 1.22515 0.95654 0.84109 0.99908 1.87998 1.20476 1.26100 1.94508 1.23677 0.81227 0.97998 0.96515 1.23110 0.97008 0.97981 0.96904 1.22432 0.99408 0.94131 0.99327 1.19865 0.78257 0.90572 0.78494 1.90689 1.49037 1.45825 1.56547 1.48538 1.42043 1.09036 1.34592 1.22084 0.94028 0.91146 0.94489 1.23029 1.00456 0.96429 0.98302 1.22690 0.86788 0.95768 0.90404 1.22101 0.94279 0.85096 0.98465 1.21141 0.88070 0.93981 0.93152 1.44073 0.99625 1.85891 1.02033 1.19204 1.06694 1.31321 0.80893 0.91292 1.25033 0.99663 0.96894 0.98049 1.70020 1.20892 1.30150 1.33621 0.86222 0.77515 0.78104 0.84933 1.20255 1.21471 1.21656 1.21583 0.93031 0.96222 0.90913 1.23095 0.83760 0.98788 0.97519 1.87658 1.14837 1.91962 1.34827 1.23449 0.97533 0.99349 0.97150 0.91834 0.91783 0.91217 0.93394 0.93452 0.89297 0.90517 0.87657 0.86919 0.91740 0.91867 0.89575 0.89433 0.89833 0.89734 0.88401 0.95204 0.93465 0.95570 0.91922 0.90008 0.93499 0.88678 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.42 6.50 37.16 0.24 0.67 16 3 O -0.37 -4.02 10.36 -35.23 -0.36 -4.38 16 4 C 0.06 0.60 4.31 -25.83 -0.11 0.49 16 5 C -0.11 -1.23 7.23 -25.92 -0.19 -1.41 16 6 C -0.13 -1.48 3.34 -90.96 -0.30 -1.79 16 7 C 0.54 8.48 7.37 -10.98 -0.08 8.40 16 8 O -0.54 -10.53 16.18 5.55 0.09 -10.44 16 9 N -0.61 -9.56 3.33 -170.77 -0.57 -10.12 16 10 C 0.11 1.41 6.48 -2.96 -0.02 1.39 16 11 C -0.14 -2.33 5.87 -25.25 -0.15 -2.47 16 12 C 0.09 1.60 0.84 -89.65 -0.08 1.52 16 13 C 0.12 2.20 6.08 -2.88 -0.02 2.18 16 14 C 0.16 3.71 4.07 -3.92 -0.02 3.70 16 15 N -0.59 -14.09 2.98 -172.26 -0.51 -14.61 16 16 C -0.25 -6.53 9.67 -15.06 -0.15 -6.68 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.06 4.96 -17.43 -0.09 -0.02 16 19 N -0.90 -25.18 11.12 55.49 0.62 -24.56 16 20 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.11 2.19 6.71 -3.54 -0.02 2.17 16 25 C 0.05 0.79 6.78 37.30 0.25 1.04 16 26 O -0.37 -7.11 10.29 -35.22 -0.36 -7.47 16 27 C -0.14 -1.37 7.48 -25.83 -0.19 -1.56 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.42 7.45 -51.93 -0.39 1.03 16 36 H 0.11 1.04 8.12 -51.93 -0.42 0.62 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.38 6.07 -51.93 -0.32 1.06 16 40 H 0.09 1.49 7.83 -51.93 -0.41 1.09 16 41 H 0.08 1.60 8.05 -51.93 -0.42 1.18 16 42 H 0.08 1.50 7.99 -51.93 -0.42 1.09 16 43 H 0.10 2.44 5.94 -51.93 -0.31 2.13 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 48 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.05 0.77 6.22 -51.93 -0.32 0.44 16 50 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -31.42 398.64 -9.52 -40.94 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.86 Total: 1.92 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.53 Total: 6.97 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.47 Total: -49.30 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.64 Total: -22.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.42 -9.52 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972371304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.633 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds