Wall clock time and date at job start Tue Mar 31 2020 21:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47440 * 2 1 4 4 C 1.42897 * 114.00269 * 180.02562 * 3 2 1 5 5 C 1.53782 * 113.61288 * 210.00030 * 4 3 2 6 6 C 1.53780 * 87.07988 * 219.93115 * 5 4 3 7 7 C 1.50706 * 113.61728 * 139.97667 * 6 5 4 8 8 O 1.21283 * 119.99802 * 1.53156 * 7 6 5 9 9 N 1.34774 * 119.99910 * 181.52775 * 7 6 5 10 10 C 1.47083 * 125.63141 * 0.02562 * 9 7 6 11 11 C 1.54453 * 107.29763 * 180.98052 * 10 9 7 12 12 C 1.54368 * 102.86442 * 21.50807 * 11 10 9 13 13 C 1.47573 * 125.62517 * 180.02562 * 9 7 6 14 14 C 1.52360 * 110.38297 * 207.57825 * 12 11 10 15 15 N 1.47328 * 108.41098 * 286.59307 * 14 12 11 16 16 C 1.36941 * 121.07278 * 130.79180 * 15 14 12 17 17 H 1.07994 * 119.99986 * 205.68896 * 16 15 14 18 18 C 1.38812 * 119.99866 * 25.69937 * 16 15 14 19 19 N 1.31618 * 120.00143 * 16.71633 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 196.72289 * 18 16 15 21 21 H 1.48502 * 109.47045 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47368 * 119.99593 * 20 18 16 23 23 H 1.48495 * 109.47149 * 239.99802 * 20 18 16 24 24 C 1.47163 * 117.85544 * 310.82146 * 15 14 12 25 25 C 1.53279 * 108.55070 * 51.22184 * 24 15 14 26 26 O 1.41882 * 110.72347 * 83.68613 * 12 11 10 27 27 C 1.53781 * 87.17352 * 25.38935 * 6 5 4 28 28 H 1.08996 * 109.47417 * 300.00706 * 1 2 3 29 29 H 1.09000 * 109.46615 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47417 * 239.99294 * 2 1 3 32 32 H 1.09008 * 109.46917 * 119.99392 * 2 1 3 33 33 H 1.09001 * 112.85032 * 341.18590 * 4 3 2 34 34 H 1.08992 * 113.61798 * 105.38037 * 5 4 3 35 35 H 1.09000 * 113.68966 * 334.48572 * 5 4 3 36 36 H 1.09004 * 113.61389 * 270.79587 * 6 5 4 37 37 H 1.09008 * 109.87478 * 61.55384 * 10 9 7 38 38 H 1.09001 * 109.87865 * 300.40611 * 10 9 7 39 39 H 1.09000 * 110.73841 * 139.85232 * 11 10 9 40 40 H 1.09000 * 110.73553 * 263.16215 * 11 10 9 41 41 H 1.08993 * 110.38124 * 37.86711 * 13 9 7 42 42 H 1.09003 * 110.46990 * 275.56346 * 13 9 7 43 43 H 1.09001 * 109.68027 * 46.32464 * 14 12 11 44 44 H 1.09003 * 109.67897 * 166.86425 * 14 12 11 45 45 H 0.96996 * 120.00101 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.62179 * 291.50458 * 24 15 14 47 47 H 1.08991 * 109.78050 * 171.03060 * 24 15 14 48 48 H 1.09002 * 109.50856 * 187.08069 * 25 24 15 49 49 H 1.08997 * 109.51639 * 66.93178 * 25 24 15 50 50 H 1.08999 * 113.61808 * 89.16185 * 27 6 5 51 51 H 1.09005 * 113.61272 * 220.06768 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9489 2.7250 0.7039 6 6 4.9911 2.8301 -0.4220 7 6 5.2302 4.2413 -0.8937 8 8 4.6429 5.1637 -0.3691 9 7 6.0966 4.4783 -1.8984 10 6 6.8718 3.4576 -2.6201 11 6 7.7418 4.1937 -3.6626 12 6 7.8140 5.6288 -3.0983 13 6 6.4241 5.8047 -2.4562 14 6 8.0130 6.6332 -4.2266 15 7 9.4014 6.5241 -4.7071 16 6 9.6801 6.4098 -6.0430 17 1 10.5927 5.9306 -6.3651 18 6 8.7897 6.9102 -6.9830 19 7 7.8613 7.7689 -6.6183 20 14 8.9091 6.3647 -8.7655 21 1 10.0298 5.4019 -8.9146 22 1 7.6379 5.7119 -9.1697 23 1 9.1548 7.5471 -9.6296 24 6 10.4792 6.5413 -3.7051 25 6 10.1587 5.5006 -2.6264 26 8 8.8392 5.7339 -2.1233 27 6 4.0060 2.0445 -1.3036 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9281 0.5456 0.3230 34 1 4.3835 2.5318 1.6846 35 1 3.2319 3.5460 0.7131 36 1 5.9154 2.2913 -0.2130 37 1 6.1960 2.7660 -3.1232 38 1 7.5093 2.9145 -1.9224 39 1 8.7361 3.7503 -3.7177 40 1 7.2606 4.1872 -4.6405 41 1 6.4645 6.5507 -1.6626 42 1 5.6914 6.0928 -3.2100 43 1 7.3241 6.4111 -5.0416 44 1 7.8310 7.6421 -3.8562 45 1 7.2388 8.1182 -7.2751 46 1 10.5420 7.5306 -3.2521 47 1 11.4286 6.2953 -4.1804 48 1 10.8789 5.5862 -1.8126 49 1 10.2125 4.5009 -3.0574 50 1 3.3037 2.6782 -1.8452 51 1 4.4867 1.3025 -1.9411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972371304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:03 Heat of formation + Delta-G solvation = -90.856431 kcal Electronic energy + Delta-G solvation = -30770.767687 eV Core-core repulsion = 26671.177076 eV Total energy + Delta-G solvation = -4099.590611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.80775 -40.78992 -39.35895 -37.56733 -36.92774 -36.25849 -33.26620 -32.94182 -31.83266 -30.87724 -29.24646 -28.09211 -26.72132 -26.21154 -25.14708 -23.97627 -23.62464 -23.00068 -21.28578 -20.56323 -19.81416 -18.91209 -18.75034 -17.60364 -17.46703 -16.91046 -16.72844 -16.52164 -16.25315 -16.16446 -15.88698 -15.73487 -15.21388 -15.15744 -14.71106 -14.54553 -14.32690 -14.00153 -13.75672 -13.70638 -13.58946 -13.43591 -13.36254 -13.08791 -12.83316 -12.66138 -12.48518 -12.46235 -12.43017 -12.20606 -12.10313 -12.04539 -11.87927 -11.82231 -11.78821 -11.57285 -11.15228 -10.90128 -10.73173 -10.47010 -10.34096 -9.68931 -8.73589 -7.89363 -5.35576 1.46558 1.49251 1.55919 1.59153 1.89832 2.48450 2.72619 2.82419 3.24038 3.36029 3.44001 3.52459 3.61171 3.70907 3.77600 3.91828 4.01194 4.06978 4.22723 4.23808 4.29626 4.31454 4.37960 4.44183 4.51929 4.55144 4.57620 4.66072 4.69918 4.72187 4.76573 4.78838 4.87768 4.92560 4.96677 5.02618 5.04931 5.06643 5.09083 5.12532 5.20492 5.25362 5.27403 5.35495 5.50684 5.62688 6.29334 6.40639 6.41058 6.52160 7.06401 7.10746 7.75482 8.30425 9.17209 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002600 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.305066 B =10768.657098 C =11677.230390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 O -0.401 6.401 4 C 0.074 3.926 5 C -0.121 4.121 6 C -0.122 4.122 7 C 0.532 3.468 8 O -0.592 6.592 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.137 4.137 12 C 0.094 3.906 13 C 0.125 3.875 14 C 0.174 3.826 15 N -0.608 5.608 16 C -0.255 4.255 17 H 0.077 0.923 18 C -0.051 4.051 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.298 1.298 24 C 0.102 3.898 25 C 0.053 3.947 26 O -0.383 6.383 27 C -0.134 4.134 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.072 0.928 44 H -0.012 1.012 45 H 0.250 0.750 46 H 0.010 0.990 47 H 0.076 0.924 48 H 0.117 0.883 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -20.836 12.520 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.321 6.321 4 C 0.016 3.984 5 C -0.159 4.159 6 C -0.143 4.143 7 C 0.322 3.678 8 O -0.473 6.473 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.175 4.175 12 C 0.052 3.948 13 C 0.002 3.998 14 C 0.048 3.952 15 N -0.332 5.332 16 C -0.384 4.384 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.585 5.585 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.216 1.216 23 H -0.225 1.225 24 C -0.024 4.024 25 C -0.024 4.024 26 O -0.302 6.302 27 C -0.172 4.172 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.006 0.994 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.094 0.906 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.026 -20.119 12.932 24.664 hybrid contribution 0.113 0.919 -1.498 1.761 sum -5.913 -19.200 11.434 23.116 Atomic orbital electron populations 1.21792 0.93715 1.03270 1.02318 1.22732 0.95905 0.82936 1.01239 1.87978 1.21370 1.28195 1.94578 1.23720 0.80987 0.98366 0.95325 1.23114 0.96606 0.98030 0.98115 1.22552 1.01096 0.91086 0.99572 1.20812 0.77106 0.92182 0.77652 1.90668 1.50697 1.47844 1.58056 1.48624 1.42345 1.08386 1.34780 1.22230 0.94271 0.90354 0.94192 1.22928 1.01563 0.94533 0.98481 1.22347 0.87042 0.96351 0.89035 1.21848 0.93982 0.86455 0.97562 1.20855 0.87548 0.93185 0.93630 1.44330 1.00679 1.85859 1.02313 1.19559 1.06583 1.30286 0.82015 0.90557 1.25792 0.99750 0.97246 1.01857 1.70193 1.21956 1.31808 1.34569 0.85208 0.77691 0.77433 0.80129 1.18563 1.21615 1.22548 1.21797 0.92678 0.96719 0.91161 1.23178 0.83377 0.98222 0.97619 1.87659 1.15609 1.92128 1.34813 1.23431 0.96765 0.99283 0.97697 0.92593 0.92919 0.89058 0.92202 0.91803 0.85744 0.88789 0.91286 0.83402 0.88823 0.88890 0.88652 0.90786 0.91975 0.90821 0.91008 0.99398 0.94107 0.97178 0.90560 0.86561 0.91763 0.91427 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.62 6.50 71.98 0.47 1.09 16 3 O -0.40 -8.04 10.36 -148.98 -1.54 -9.58 16 4 C 0.07 1.16 4.31 31.18 0.13 1.30 16 5 C -0.12 -2.46 7.23 31.12 0.23 -2.24 16 6 C -0.12 -2.41 3.34 -11.01 -0.04 -2.45 16 7 C 0.53 16.40 7.37 87.66 0.65 17.05 16 8 O -0.59 -23.83 16.18 -3.04 -0.05 -23.87 16 9 N -0.61 -18.51 3.33 -812.57 -2.71 -21.22 16 10 C 0.11 2.58 6.48 86.76 0.56 3.14 16 11 C -0.14 -4.17 5.87 31.55 0.19 -3.98 16 12 C 0.09 3.54 0.84 -10.17 -0.01 3.53 16 13 C 0.13 4.65 6.08 86.55 0.53 5.17 16 14 C 0.17 8.32 4.07 86.01 0.35 8.67 16 15 N -0.61 -29.26 2.98 -698.90 -2.08 -31.35 16 16 C -0.25 -13.23 9.67 84.03 0.81 -12.42 16 17 H 0.08 3.79 7.88 -2.91 -0.02 3.77 16 18 C -0.05 -2.76 4.96 84.86 0.42 -2.34 16 19 N -0.94 -54.56 11.12 21.65 0.24 -54.32 16 20 Si 0.97 43.10 29.59 68.60 2.03 45.13 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.10 4.03 6.71 86.35 0.58 4.61 16 25 C 0.05 1.68 6.78 72.08 0.49 2.17 16 26 O -0.38 -14.11 10.29 -148.95 -1.53 -15.64 16 27 C -0.13 -2.30 7.48 31.18 0.23 -2.06 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.12 1.11 7.87 -2.39 -0.02 1.09 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.93 7.45 -2.39 -0.02 1.91 16 36 H 0.15 1.94 8.12 -2.38 -0.02 1.92 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.73 6.07 -2.39 -0.01 2.72 16 40 H 0.07 2.46 7.83 -2.39 -0.02 2.44 16 41 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 42 H 0.07 2.83 7.99 -2.39 -0.02 2.81 16 43 H 0.07 3.78 5.94 -2.39 -0.01 3.77 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 48 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.06 1.85 6.22 -2.39 -0.01 1.84 16 50 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 51 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -73.01 398.64 1.58 -71.43 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.90 Total: 19.29 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.33 Total: 20.12 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -4.55 Total: -106.88 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -3.12 Total: -49.10 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.01 1.58 -71.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972371304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.424 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds