Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46959 * 2 1 4 4 C 1.34774 * 119.99450 * 83.12772 * 3 2 1 5 5 O 1.21280 * 120.00377 * 5.99064 * 4 3 2 6 6 C 1.50702 * 119.99525 * 185.98539 * 4 3 2 7 7 H 1.08999 * 109.86251 * 308.69747 * 6 4 3 8 8 O 1.43355 * 109.86714 * 187.72024 * 6 4 3 9 9 C 1.44251 * 109.82919 * 240.58108 * 8 6 4 10 10 C 1.53995 * 104.53836 * 336.25831 * 9 8 6 11 11 H 1.08995 * 109.51205 * 281.44767 * 10 9 8 12 12 C 1.50955 * 112.60475 * 159.10672 * 10 9 8 13 13 O 1.42688 * 111.79108 * 293.71967 * 12 10 9 14 14 C 1.43251 * 112.53179 * 299.94169 * 13 12 10 15 15 C 1.52717 * 108.26794 * 65.59225 * 14 13 12 16 16 C 1.53119 * 110.61322 * 299.80447 * 15 14 13 17 17 H 1.08994 * 112.28296 * 283.02368 * 16 15 14 18 18 C 1.46496 * 120.00132 * 263.13219 * 3 2 1 19 19 H 1.08996 * 110.88754 * 170.48531 * 18 3 2 20 20 C 1.55164 * 111.00226 * 294.36441 * 18 3 2 21 21 C 1.54319 * 102.94279 * 82.61004 * 20 18 3 22 22 N 1.47017 * 107.27277 * 22.19211 * 21 20 18 23 23 C 1.36938 * 125.64972 * 181.01984 * 22 21 20 24 24 H 1.08003 * 120.00137 * 180.02562 * 23 22 21 25 25 C 1.38805 * 120.00055 * 359.74955 * 23 22 21 26 26 N 1.31623 * 120.00057 * 0.27758 * 25 23 22 27 27 Si 1.86801 * 120.00291 * 180.27498 * 25 23 22 28 28 H 1.48504 * 109.46807 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.47285 * 120.00335 * 27 25 23 30 30 H 1.48498 * 109.47143 * 240.00432 * 27 25 23 31 31 C 1.47427 * 108.70419 * 1.28868 * 22 21 20 32 32 H 1.08998 * 109.47396 * 298.78696 * 1 2 3 33 33 H 1.09000 * 109.46925 * 58.78612 * 1 2 3 34 34 H 1.08998 * 109.46741 * 178.78391 * 1 2 3 35 35 H 1.09001 * 109.47081 * 240.00272 * 2 1 3 36 36 H 1.08997 * 109.47260 * 119.99989 * 2 1 3 37 37 H 1.09002 * 110.34809 * 217.53411 * 9 8 6 38 38 H 1.08994 * 110.48834 * 95.06249 * 9 8 6 39 39 H 1.08999 * 109.01914 * 173.12942 * 12 10 9 40 40 H 1.08995 * 108.95873 * 54.27462 * 12 10 9 41 41 H 1.09001 * 109.69843 * 305.90080 * 14 13 12 42 42 H 1.08999 * 109.70733 * 185.29473 * 14 13 12 43 43 H 1.08997 * 109.24497 * 179.51118 * 15 14 13 44 44 H 1.09000 * 109.24445 * 60.10208 * 15 14 13 45 45 H 1.09002 * 110.71931 * 324.24586 * 20 18 3 46 46 H 1.08996 * 110.71835 * 200.97628 * 20 18 3 47 47 H 1.09001 * 109.88207 * 262.77387 * 21 20 18 48 48 H 1.09004 * 110.01153 * 141.68585 * 21 20 18 49 49 H 0.96999 * 120.00324 * 179.97438 * 26 25 23 50 50 H 1.09000 * 110.37023 * 94.47615 * 31 22 21 51 51 H 1.09002 * 110.36600 * 216.80578 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1112 2.0631 1.1589 5 8 1.8952 1.5015 2.2119 6 6 2.4837 3.5233 1.1461 7 1 3.3893 3.6694 0.5573 8 8 2.6949 3.9839 2.4871 9 6 1.7641 5.0426 2.7932 10 6 1.3780 5.6264 1.4215 11 1 2.1730 6.2831 1.0685 12 6 0.0723 6.3830 1.4598 13 8 -1.0323 5.5203 1.7274 14 6 -1.1814 4.4962 0.7369 15 6 0.0345 3.5753 0.8136 16 6 1.3220 4.3589 0.5435 17 1 1.4634 4.5687 -0.5166 18 6 2.4055 2.0214 -1.2596 19 1 2.5840 3.0869 -1.1152 20 6 3.6489 1.3279 -1.8766 21 6 3.0390 0.1168 -2.6135 22 7 1.6261 0.4297 -2.8724 23 6 0.7261 -0.3965 -3.4910 24 1 -0.2941 -0.0725 -3.6350 25 6 1.1264 -1.6481 -3.9381 26 7 2.3697 -2.0431 -3.7626 27 14 -0.0993 -2.7722 -4.7888 28 1 -1.4206 -2.0983 -4.8622 29 1 0.3778 -3.0760 -6.1618 30 1 -0.2294 -4.0354 -4.0192 31 6 1.3401 1.7827 -2.3616 32 1 -0.3634 0.4949 0.9006 33 1 -0.3633 0.5326 -0.8789 34 1 -0.3633 -1.0274 -0.0218 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.2444 5.8033 3.4087 38 1 0.8846 4.6431 3.2979 39 1 -0.0835 6.8714 0.4978 40 1 0.1262 7.1431 2.2391 41 1 -1.2382 4.9482 -0.2533 42 1 -2.0884 3.9245 0.9330 43 1 -0.0669 2.7837 0.0712 44 1 0.0862 3.1305 1.8074 45 1 4.3343 0.9989 -1.0955 46 1 4.1527 1.9926 -2.5783 47 1 3.1132 -0.7731 -1.9885 48 1 3.5611 -0.0478 -3.5561 49 1 2.6493 -2.9179 -4.0747 50 1 1.4440 2.5190 -3.1586 51 1 0.3379 1.8231 -1.9348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033908418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -95.579417 kcal Electronic energy + Delta-G solvation = -33237.055191 eV Core-core repulsion = 29137.259776 eV Total energy + Delta-G solvation = -4099.795415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.45502 -40.65023 -39.17056 -38.33736 -35.94361 -34.25931 -34.00981 -32.95518 -32.25021 -30.73017 -29.53928 -28.94767 -26.44209 -26.33791 -25.18061 -24.48242 -23.05060 -22.31774 -21.90406 -20.63176 -19.71772 -18.84959 -18.61900 -17.73439 -17.47494 -17.14146 -16.80805 -16.62645 -16.20819 -16.06444 -15.76781 -15.65827 -15.48849 -14.80939 -14.59298 -14.48701 -14.22699 -13.92119 -13.83124 -13.70102 -13.59927 -13.40235 -13.10788 -13.02047 -12.89587 -12.85032 -12.72250 -12.59774 -12.34201 -12.07027 -12.00212 -11.95814 -11.81559 -11.67692 -11.54315 -11.24011 -11.22482 -11.09153 -10.64561 -10.53329 -10.26700 -9.60672 -8.76968 -7.77835 -5.09980 1.47550 1.50229 1.55118 1.57516 1.90090 2.53797 2.81815 3.00246 3.16215 3.34283 3.44293 3.58158 3.67820 3.83854 3.89386 3.96235 3.99279 4.05890 4.18107 4.20203 4.29005 4.35590 4.38915 4.48686 4.53193 4.54226 4.62299 4.69494 4.70521 4.72248 4.76281 4.79473 4.85911 4.91737 4.99018 5.00918 5.07926 5.10757 5.14875 5.20153 5.25593 5.37572 5.56679 5.61901 5.72265 5.83843 5.87895 6.22072 6.26394 6.54478 7.18035 7.19632 7.85817 8.48419 9.32202 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.003808 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.536089 B = 7351.674579 C = 7806.088284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.106 3.894 3 N -0.580 5.580 4 C 0.504 3.496 5 O -0.581 6.581 6 C 0.065 3.935 7 H 0.127 0.873 8 O -0.381 6.381 9 C 0.051 3.949 10 C -0.142 4.142 11 H 0.128 0.872 12 C 0.067 3.933 13 O -0.397 6.397 14 C 0.065 3.935 15 C -0.161 4.161 16 C -0.097 4.097 17 H 0.141 0.859 18 C 0.124 3.876 19 H 0.135 0.865 20 C -0.148 4.148 21 C 0.183 3.817 22 N -0.612 5.612 23 C -0.215 4.215 24 H 0.082 0.918 25 C -0.060 4.060 26 N -0.949 5.949 27 Si 0.960 3.040 28 H -0.266 1.266 29 H -0.299 1.299 30 H -0.302 1.302 31 C 0.123 3.877 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.013 0.987 48 H 0.008 0.992 49 H 0.242 0.758 50 H 0.053 0.947 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 21.016 6.554 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 N -0.313 5.313 4 C 0.294 3.706 5 O -0.461 6.461 6 C 0.004 3.996 7 H 0.144 0.856 8 O -0.299 6.299 9 C -0.025 4.025 10 C -0.160 4.160 11 H 0.146 0.854 12 C -0.010 4.010 13 O -0.316 6.316 14 C -0.012 4.012 15 C -0.198 4.198 16 C -0.115 4.115 17 H 0.159 0.841 18 C 0.020 3.980 19 H 0.152 0.848 20 C -0.187 4.187 21 C 0.058 3.942 22 N -0.338 5.338 23 C -0.345 4.345 24 H 0.100 0.900 25 C -0.253 4.253 26 N -0.599 5.599 27 Si 0.791 3.209 28 H -0.191 1.191 29 H -0.227 1.227 30 H -0.229 1.229 31 C -0.003 4.003 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.031 0.969 48 H 0.026 0.974 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.679 20.474 7.335 21.812 hybrid contribution -0.334 -1.975 -0.709 2.125 sum -2.012 18.499 6.626 19.752 Atomic orbital electron populations 1.21881 0.95551 1.01446 1.00678 1.21543 0.94983 0.82805 1.02299 1.47886 1.63470 1.13468 1.06443 1.21409 0.76176 0.90083 0.82965 1.90651 1.51914 1.71289 1.32238 1.23105 1.01348 0.89362 0.85826 0.85574 1.88617 1.56912 1.54674 1.29726 1.23529 0.92457 0.88852 0.97642 1.22730 1.01521 0.97320 0.94449 0.85386 1.22093 0.83316 0.91697 1.03862 1.88122 1.49351 1.44039 1.50067 1.22577 0.96983 0.88824 0.92793 1.22325 0.96112 0.99463 1.01940 1.22830 0.92399 0.93878 1.02394 0.84111 1.22620 0.94937 0.97658 0.82774 0.84766 1.23223 0.97015 0.98562 0.99886 1.20931 0.84107 0.93458 0.95707 1.44638 1.07073 1.13722 1.68415 1.19282 0.91729 0.95142 1.28305 0.89997 1.25368 0.97651 0.99326 1.02947 1.70153 1.16659 1.19854 1.53190 0.85271 0.79204 0.79037 0.77438 1.19060 1.22653 1.22944 1.22184 0.97032 0.87295 0.93768 0.94137 0.91645 0.93008 0.88069 0.94242 0.87011 0.93820 0.90210 0.86940 0.90252 0.89124 0.90594 0.93810 0.91467 0.88257 0.96887 0.97419 0.94878 0.92929 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.57 71.98 0.69 -4.33 16 2 C 0.11 4.14 5.27 86.38 0.46 4.60 16 3 N -0.58 -18.62 1.90 -789.68 -1.50 -20.12 16 4 C 0.50 16.61 4.75 87.66 0.42 17.03 16 5 O -0.58 -24.79 15.80 15.63 0.25 -24.55 16 6 C 0.06 1.54 2.81 30.63 0.09 1.63 16 7 H 0.13 2.36 7.25 -2.39 -0.02 2.34 16 8 O -0.38 -10.57 10.62 -130.32 -1.38 -11.96 16 9 C 0.05 1.02 6.79 72.32 0.49 1.51 16 10 C -0.14 -1.86 3.02 -10.68 -0.03 -1.89 16 11 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 12 C 0.07 0.79 6.17 71.32 0.44 1.23 16 13 O -0.40 -7.68 10.58 -148.98 -1.58 -9.26 16 14 C 0.06 1.19 6.82 71.89 0.49 1.68 16 15 C -0.16 -3.60 3.95 30.54 0.12 -3.48 16 16 C -0.10 -1.64 2.84 -9.54 -0.03 -1.66 16 17 H 0.14 1.53 7.09 -2.39 -0.02 1.51 16 18 C 0.12 3.35 3.22 46.46 0.15 3.50 16 19 H 0.13 2.42 4.52 -2.39 -0.01 2.41 16 20 C -0.15 -4.56 6.55 31.78 0.21 -4.36 16 21 C 0.18 8.01 4.30 86.73 0.37 8.38 16 22 N -0.61 -26.57 2.19 -691.55 -1.51 -28.08 16 23 C -0.22 -10.70 10.28 84.03 0.86 -9.83 16 24 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 25 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 26 N -0.95 -53.97 10.31 21.65 0.22 -53.75 16 27 Si 0.96 44.03 29.55 68.60 2.03 46.05 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 30 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 31 C 0.12 3.90 6.13 86.93 0.53 4.44 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 2.36 5.80 -2.39 -0.01 2.35 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 4.56 3.66 -2.39 -0.01 4.56 16 36 H 0.04 1.66 7.56 -2.39 -0.02 1.65 16 37 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.09 7.49 -2.39 -0.02 1.07 16 39 H 0.08 0.62 8.13 -2.39 -0.02 0.60 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.09 8.11 -2.39 -0.02 1.07 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.89 6.24 -2.39 -0.01 1.88 16 44 H 0.04 1.34 6.23 -2.39 -0.01 1.32 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.01 0.67 5.81 -2.39 -0.01 0.66 16 48 H 0.01 0.39 7.49 -2.38 -0.02 0.37 16 49 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 50 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.05 1.66 5.63 -2.39 -0.01 1.65 16 Total: -1.00 -71.75 370.63 3.18 -68.57 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.94 Total: 17.38 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 5.72 Total: 15.71 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -2.79 Total: -101.95 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -2.71 Total: -45.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.75 3.18 -68.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033908418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.009 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds