Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42898 * 109.46747 * 2 1 4 4 C 1.42904 * 113.99743 * 180.02562 * 3 2 1 5 5 C 1.53781 * 113.61308 * 209.99711 * 4 3 2 6 6 C 1.53776 * 87.08183 * 220.01777 * 5 4 3 7 7 C 1.52998 * 113.61716 * 139.98262 * 6 5 4 8 8 C 1.50697 * 109.47670 * 175.00161 * 7 6 5 9 9 O 1.21285 * 119.99934 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00519 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00399 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.93094 * 328.64705 * 11 10 8 13 13 C 1.55063 * 110.86994 * 92.28785 * 11 10 8 14 14 O 1.44599 * 103.66842 * 81.64338 * 13 11 10 15 15 C 1.42846 * 106.73521 * 39.08822 * 14 13 11 16 16 C 1.52653 * 115.96585 * 202.47029 * 15 14 13 17 17 N 1.47224 * 87.78043 * 218.41234 * 16 15 14 18 18 C 1.36931 * 135.96376 * 206.38030 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72312 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 C 1.47220 * 88.06760 * 26.63433 * 17 16 15 27 27 C 1.53317 * 108.32613 * 334.30564 * 15 14 13 28 28 C 1.53783 * 113.61362 * 112.50152 * 4 3 2 29 29 H 1.08999 * 109.46983 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.46565 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46740 * 299.99888 * 1 2 3 32 32 H 1.09003 * 109.46740 * 240.00112 * 2 1 3 33 33 H 1.08999 * 109.46983 * 119.99853 * 2 1 3 34 34 H 1.08999 * 112.84827 * 341.19587 * 4 3 2 35 35 H 1.09003 * 113.61345 * 105.46779 * 5 4 3 36 36 H 1.09002 * 113.69158 * 334.58137 * 5 4 3 37 37 H 1.09001 * 113.61611 * 270.80092 * 6 5 4 38 38 H 1.09002 * 109.47295 * 54.99872 * 7 6 5 39 39 H 1.09005 * 109.46946 * 295.00433 * 7 6 5 40 40 H 0.97003 * 119.99666 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.58523 * 200.18961 * 13 11 10 42 42 H 1.09004 * 110.58359 * 323.09383 * 13 11 10 43 43 H 1.09002 * 113.49461 * 103.68038 * 16 15 14 44 44 H 1.08998 * 113.55945 * 333.15309 * 16 15 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09001 * 113.49518 * 88.09122 * 26 17 16 47 47 H 1.08998 * 113.50705 * 218.63960 * 26 17 16 48 48 H 1.09002 * 110.56619 * 120.19354 * 27 15 14 49 49 H 1.08999 * 110.56481 * 243.04261 * 27 15 14 50 50 H 1.09001 * 113.61760 * 25.42987 * 28 4 3 51 51 H 1.09000 * 113.61112 * 254.52360 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9489 2.7252 0.7038 6 6 4.9896 2.8315 -0.4232 7 6 5.2308 4.2646 -0.9016 8 6 6.3477 4.2754 -1.9133 9 8 6.8971 3.2389 -2.2210 10 7 6.7368 5.4369 -2.4753 11 6 7.8229 5.4474 -3.4583 12 1 8.5459 4.6592 -3.2482 13 6 7.2652 5.3156 -4.8992 14 8 6.8576 6.6624 -5.2323 15 6 7.8474 7.5378 -4.6898 16 6 7.4018 8.9760 -4.4377 17 7 8.7316 9.4082 -4.8984 18 6 9.5469 10.4864 -4.6794 19 1 9.2291 11.2780 -4.0171 20 6 10.7845 10.5589 -5.3040 21 7 11.1719 9.5939 -6.1108 22 14 11.8999 12.0260 -4.9993 23 1 12.7805 11.7453 -3.8370 24 1 12.7332 12.2728 -6.2035 25 1 11.0727 13.2261 -4.7153 26 6 8.7983 8.1768 -5.7025 27 6 8.5147 6.8341 -3.5023 28 6 4.0018 2.0466 -1.3025 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9280 0.5457 0.3228 35 1 4.3849 2.5317 1.6840 36 1 3.2312 3.5456 0.7144 37 1 5.9145 2.2933 -0.2158 38 1 5.5042 4.8902 -0.0519 39 1 4.3212 4.6524 -1.3605 40 1 6.2976 6.2660 -2.2290 41 1 8.0427 4.9708 -5.5810 42 1 6.4098 4.6403 -4.9188 43 1 7.2136 9.1947 -3.3866 44 1 6.5897 9.3008 -5.0881 45 1 12.0366 9.6447 -6.5475 46 1 8.3659 8.2835 -6.6974 47 1 9.7884 7.7213 -5.7187 48 1 9.5850 6.7226 -3.6755 49 1 8.3304 7.3832 -2.5790 50 1 3.2978 2.6807 -1.8415 51 1 4.4807 1.3052 -1.9422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053902968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -50.353435 kcal Electronic energy + Delta-G solvation = -29343.802026 eV Core-core repulsion = 25245.967757 eV Total energy + Delta-G solvation = -4097.834269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52648 -39.89269 -38.87834 -36.81623 -36.29222 -34.26340 -32.13661 -31.73974 -30.87412 -29.36059 -28.05313 -25.98479 -25.81754 -24.76716 -23.78210 -23.07615 -22.13341 -21.36507 -20.39689 -19.73355 -18.81210 -17.42532 -17.05464 -16.85926 -16.40182 -15.98289 -15.87607 -15.29870 -15.21592 -15.03873 -14.91020 -14.28081 -14.17561 -13.74035 -13.60039 -13.37786 -13.17867 -12.84971 -12.71092 -12.60666 -12.46106 -12.39219 -12.06278 -11.66392 -11.57915 -11.38601 -11.38245 -11.12345 -11.06629 -10.96187 -10.92752 -10.82158 -10.72877 -10.59436 -10.58224 -10.08018 -9.79099 -9.69699 -9.56941 -9.13630 -8.85981 -8.61413 -6.95306 -5.82031 -3.15364 2.60973 3.10855 3.36132 3.39151 3.40848 3.43302 4.18627 4.23664 4.29443 4.47347 4.49997 4.51427 4.69701 4.70754 4.77607 4.86030 4.90535 4.98691 5.06373 5.17822 5.23764 5.26120 5.31218 5.34310 5.35914 5.43530 5.50318 5.51151 5.51854 5.53067 5.59777 5.72615 5.77997 5.85488 5.90853 5.92914 6.12780 6.17479 6.28871 6.36017 6.52264 6.57474 6.62442 6.95452 6.96249 7.16418 7.45661 7.50728 7.61875 7.91049 8.20844 8.97790 9.64315 10.56723 11.35410 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.001770 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.921298 B =15815.098337 C =15950.534393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.061 3.939 5 C -0.133 4.133 6 C -0.092 4.092 7 C -0.130 4.130 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.715 5.715 11 C 0.107 3.893 12 H 0.104 0.896 13 C 0.041 3.959 14 O -0.363 6.363 15 C 0.043 3.957 16 C 0.128 3.872 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.147 3.853 27 C -0.114 4.114 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.403 0.597 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.255 0.745 46 H 0.032 0.968 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 -17.814 13.539 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.003 3.997 5 C -0.170 4.170 6 C -0.111 4.111 7 C -0.170 4.170 8 C 0.300 3.700 9 O -0.422 6.422 10 N -0.366 5.366 11 C 0.002 3.998 12 H 0.122 0.878 13 C -0.037 4.037 14 O -0.281 6.281 15 C 0.002 3.998 16 C 0.002 3.998 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.021 3.979 27 C -0.152 4.152 28 C -0.184 4.184 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.238 0.762 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.239 -18.126 13.153 27.664 hybrid contribution 0.747 1.002 0.077 1.252 sum -15.493 -17.124 13.230 26.614 Atomic orbital electron populations 1.21753 0.93854 1.02190 1.03133 1.22500 0.95564 0.84133 0.99939 1.87951 1.20814 1.26141 1.94630 1.23679 0.80851 0.97888 0.97270 1.23318 0.97739 0.98003 0.97958 1.22064 0.97935 0.94728 0.96341 1.21649 0.98072 0.98708 0.98555 1.20695 0.84087 0.83450 0.81769 1.90684 1.56332 1.32000 1.63143 1.46018 1.37441 1.09957 1.43198 1.22603 0.89120 0.99328 0.88771 0.87801 1.23886 1.00049 0.85840 0.93949 1.88751 1.46621 1.15101 1.77578 1.23903 0.90530 0.90142 0.95213 1.22421 0.90392 0.89256 0.97744 1.45301 1.13765 1.22280 1.51624 1.18884 0.95523 0.96744 1.23338 0.89946 1.24809 0.97742 0.98564 0.99194 1.69832 1.21045 1.32723 1.32884 0.86090 0.80546 0.81711 0.77217 1.21466 1.21579 1.20613 1.22518 0.97138 0.85685 0.92524 1.22664 1.01201 0.92766 0.98614 1.23541 0.97801 1.00187 0.96901 0.91815 0.91213 0.91904 0.93398 0.93523 0.89635 0.90909 0.88963 0.87937 0.88569 0.88574 0.76228 0.91303 0.89555 0.93893 0.94192 0.93540 0.95028 0.90800 0.88641 0.89958 0.89330 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.38 6.50 37.16 0.24 0.62 16 3 O -0.38 -3.48 10.35 -35.23 -0.36 -3.85 16 4 C 0.06 0.49 4.31 -25.92 -0.11 0.38 16 5 C -0.13 -0.97 7.47 -25.92 -0.19 -1.16 16 6 C -0.09 -0.78 3.15 -89.81 -0.28 -1.06 16 7 C -0.13 -1.07 5.54 -27.89 -0.15 -1.22 16 8 C 0.51 6.05 7.83 -10.99 -0.09 5.96 16 9 O -0.54 -8.26 15.40 5.55 0.09 -8.17 16 10 N -0.71 -8.37 5.15 -51.72 -0.27 -8.64 16 11 C 0.11 1.49 3.51 -65.77 -0.23 1.26 16 12 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 13 C 0.04 0.61 7.42 38.25 0.28 0.89 16 14 O -0.36 -6.48 11.32 -35.23 -0.40 -6.87 16 15 C 0.04 0.81 1.66 -90.68 -0.15 0.66 16 16 C 0.13 2.64 8.20 -8.03 -0.07 2.58 16 17 N -0.60 -15.26 3.74 -184.61 -0.69 -15.95 16 18 C -0.22 -6.00 10.74 -15.06 -0.16 -6.16 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.91 11.51 55.49 0.64 -26.28 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.51 6.92 -7.90 -0.05 3.45 16 27 C -0.11 -1.85 6.11 -25.50 -0.16 -2.00 16 28 C -0.15 -1.31 7.46 -25.92 -0.19 -1.51 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.10 0.98 7.67 -51.93 -0.40 0.59 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.69 7.84 -51.93 -0.41 0.28 16 40 H 0.40 4.06 8.63 -40.82 -0.35 3.71 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 48 H 0.10 1.68 7.82 -51.93 -0.41 1.27 16 49 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 50 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -32.68 410.71 -9.85 -42.53 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.98 Total: 2.36 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.03 Total: 1.93 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.32 Total: -50.87 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.68 Total: -18.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.68 -9.85 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053902968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.828 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds