Wall clock time and date at job start Tue Mar 31 2020 21:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42898 * 109.46747 * 2 1 4 4 C 1.42904 * 113.99743 * 180.02562 * 3 2 1 5 5 C 1.53781 * 113.61308 * 209.99711 * 4 3 2 6 6 C 1.53776 * 87.08183 * 220.01777 * 5 4 3 7 7 C 1.52998 * 113.61716 * 139.98262 * 6 5 4 8 8 C 1.50697 * 109.47670 * 175.00161 * 7 6 5 9 9 O 1.21285 * 119.99934 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00519 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00399 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.93094 * 328.64705 * 11 10 8 13 13 C 1.55063 * 110.86994 * 92.28785 * 11 10 8 14 14 O 1.44599 * 103.66842 * 81.64338 * 13 11 10 15 15 C 1.42846 * 106.73521 * 39.08822 * 14 13 11 16 16 C 1.52653 * 115.96585 * 202.47029 * 15 14 13 17 17 N 1.47224 * 87.78043 * 218.41234 * 16 15 14 18 18 C 1.36931 * 135.96376 * 206.38030 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72312 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 C 1.47220 * 88.06760 * 26.63433 * 17 16 15 27 27 C 1.53317 * 108.32613 * 334.30564 * 15 14 13 28 28 C 1.53783 * 113.61362 * 112.50152 * 4 3 2 29 29 H 1.08999 * 109.46983 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.46565 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46740 * 299.99888 * 1 2 3 32 32 H 1.09003 * 109.46740 * 240.00112 * 2 1 3 33 33 H 1.08999 * 109.46983 * 119.99853 * 2 1 3 34 34 H 1.08999 * 112.84827 * 341.19587 * 4 3 2 35 35 H 1.09003 * 113.61345 * 105.46779 * 5 4 3 36 36 H 1.09002 * 113.69158 * 334.58137 * 5 4 3 37 37 H 1.09001 * 113.61611 * 270.80092 * 6 5 4 38 38 H 1.09002 * 109.47295 * 54.99872 * 7 6 5 39 39 H 1.09005 * 109.46946 * 295.00433 * 7 6 5 40 40 H 0.97003 * 119.99666 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.58523 * 200.18961 * 13 11 10 42 42 H 1.09004 * 110.58359 * 323.09383 * 13 11 10 43 43 H 1.09002 * 113.49461 * 103.68038 * 16 15 14 44 44 H 1.08998 * 113.55945 * 333.15309 * 16 15 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09001 * 113.49518 * 88.09122 * 26 17 16 47 47 H 1.08998 * 113.50705 * 218.63960 * 26 17 16 48 48 H 1.09002 * 110.56619 * 120.19354 * 27 15 14 49 49 H 1.08999 * 110.56481 * 243.04261 * 27 15 14 50 50 H 1.09001 * 113.61760 * 25.42987 * 28 4 3 51 51 H 1.09000 * 113.61112 * 254.52360 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9489 2.7252 0.7038 6 6 4.9896 2.8315 -0.4232 7 6 5.2308 4.2646 -0.9016 8 6 6.3477 4.2754 -1.9133 9 8 6.8971 3.2389 -2.2210 10 7 6.7368 5.4369 -2.4753 11 6 7.8229 5.4474 -3.4583 12 1 8.5459 4.6592 -3.2482 13 6 7.2652 5.3156 -4.8992 14 8 6.8576 6.6624 -5.2323 15 6 7.8474 7.5378 -4.6898 16 6 7.4018 8.9760 -4.4377 17 7 8.7316 9.4082 -4.8984 18 6 9.5469 10.4864 -4.6794 19 1 9.2291 11.2780 -4.0171 20 6 10.7845 10.5589 -5.3040 21 7 11.1719 9.5939 -6.1108 22 14 11.8999 12.0260 -4.9993 23 1 12.7805 11.7453 -3.8370 24 1 12.7332 12.2728 -6.2035 25 1 11.0727 13.2261 -4.7153 26 6 8.7983 8.1768 -5.7025 27 6 8.5147 6.8341 -3.5023 28 6 4.0018 2.0466 -1.3025 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9280 0.5457 0.3228 35 1 4.3849 2.5317 1.6840 36 1 3.2312 3.5456 0.7144 37 1 5.9145 2.2933 -0.2158 38 1 5.5042 4.8902 -0.0519 39 1 4.3212 4.6524 -1.3605 40 1 6.2976 6.2660 -2.2290 41 1 8.0427 4.9708 -5.5810 42 1 6.4098 4.6403 -4.9188 43 1 7.2136 9.1947 -3.3866 44 1 6.5897 9.3008 -5.0881 45 1 12.0366 9.6447 -6.5475 46 1 8.3659 8.2835 -6.6974 47 1 9.7884 7.7213 -5.7187 48 1 9.5850 6.7226 -3.6755 49 1 8.3304 7.3832 -2.5790 50 1 3.2978 2.6807 -1.8415 51 1 4.4807 1.3052 -1.9422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053902968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:15 Heat of formation + Delta-G solvation = -72.184258 kcal Electronic energy + Delta-G solvation = -29344.748681 eV Core-core repulsion = 25245.967757 eV Total energy + Delta-G solvation = -4098.780924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73751 -40.87495 -39.84103 -38.00851 -37.32168 -35.43276 -34.16723 -32.45698 -31.76096 -30.41185 -29.65041 -27.47170 -26.60586 -26.53836 -24.53795 -23.95568 -23.61925 -22.44001 -21.38096 -20.44166 -20.37363 -18.77466 -18.25084 -17.90030 -17.53283 -17.05392 -16.64153 -16.58341 -16.47488 -16.07966 -16.02647 -15.80664 -15.53108 -15.13645 -14.53319 -14.43843 -14.16845 -14.03813 -13.82847 -13.57052 -13.32215 -13.20060 -13.07761 -12.99103 -12.84441 -12.72941 -12.52961 -12.45910 -12.36070 -12.20627 -12.17411 -12.14123 -11.90081 -11.73221 -11.57315 -11.49189 -11.22166 -10.89683 -10.76226 -10.51268 -10.31115 -9.93301 -8.98697 -7.92656 -5.27865 1.46931 1.49112 1.57634 1.69237 2.18041 2.43397 2.81958 2.88602 3.27050 3.39594 3.52576 3.63325 3.64912 3.67663 3.69934 3.88203 3.90918 3.98923 4.07988 4.19863 4.22646 4.37491 4.38096 4.51425 4.58129 4.66395 4.68700 4.73785 4.75082 4.77720 4.81008 4.87815 4.89420 4.91726 4.93684 4.94646 4.97681 5.04206 5.12659 5.15500 5.20471 5.26915 5.30605 5.46233 5.47040 5.53110 5.85146 6.08459 6.38761 6.60638 6.86629 7.29865 7.56543 8.55223 9.24993 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.001770 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.921298 B =15815.098337 C =15950.534393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.058 3.942 5 C -0.121 4.121 6 C -0.091 4.091 7 C -0.123 4.123 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.122 3.878 12 H 0.103 0.897 13 C 0.038 3.962 14 O -0.370 6.370 15 C 0.071 3.929 16 C 0.129 3.871 17 N -0.627 5.627 18 C -0.228 4.228 19 H 0.092 0.908 20 C -0.066 4.066 21 N -0.954 5.954 22 Si 0.983 3.017 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.140 3.860 27 C -0.106 4.106 28 C -0.151 4.151 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.414 0.586 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.249 0.751 46 H 0.007 0.993 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -17.687 15.925 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.162 4.162 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.361 5.361 11 C 0.016 3.984 12 H 0.121 0.879 13 C -0.040 4.040 14 O -0.288 6.288 15 C 0.030 3.970 16 C 0.004 3.996 17 N -0.355 5.355 18 C -0.356 4.356 19 H 0.110 0.890 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.810 3.190 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.014 3.986 27 C -0.144 4.144 28 C -0.189 4.189 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.116 0.884 50 H 0.103 0.897 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.740 -17.989 15.569 29.677 hybrid contribution 1.123 0.888 -0.722 1.603 sum -16.617 -17.102 14.847 28.090 Atomic orbital electron populations 1.21767 0.93100 1.03227 1.02646 1.22674 0.96265 0.83383 1.00513 1.87924 1.21315 1.27483 1.94702 1.23760 0.80607 0.98747 0.96828 1.23250 0.97068 0.97557 0.97999 1.22000 0.97501 0.94700 0.96758 1.21695 0.97124 0.99033 0.98348 1.21324 0.84249 0.82594 0.81685 1.90679 1.57723 1.33279 1.64373 1.45944 1.36800 1.10751 1.42557 1.22298 0.89617 0.97710 0.88745 0.87884 1.24054 1.00734 0.84495 0.94717 1.88741 1.45941 1.16296 1.77796 1.23426 0.89230 0.90240 0.94095 1.22525 0.88249 0.89711 0.99106 1.45588 1.15692 1.22165 1.52054 1.19330 0.95932 0.97436 1.22859 0.89006 1.25682 0.99396 1.01342 0.99444 1.70033 1.21166 1.34714 1.34279 0.85020 0.78460 0.78833 0.76642 1.20872 1.22394 1.19168 1.22486 0.96872 0.86473 0.92789 1.22545 1.00103 0.93946 0.97842 1.23551 0.98024 1.00116 0.97206 0.92561 0.89460 0.92074 0.93323 0.92437 0.88832 0.89627 0.88518 0.89219 0.86000 0.86940 0.74893 0.91322 0.88217 0.91013 0.94194 0.94229 0.97533 0.93623 0.90380 0.88387 0.89725 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.99 0.74 -0.80 16 2 C 0.05 0.61 6.50 71.99 0.47 1.07 16 3 O -0.39 -6.80 10.35 -148.98 -1.54 -8.35 16 4 C 0.06 0.86 4.31 31.12 0.13 1.00 16 5 C -0.12 -1.47 7.47 31.12 0.23 -1.24 16 6 C -0.09 -1.37 3.15 -10.27 -0.03 -1.40 16 7 C -0.12 -1.66 5.54 29.85 0.17 -1.49 16 8 C 0.51 10.97 7.83 87.66 0.69 11.66 16 9 O -0.58 -16.96 15.40 -3.04 -0.05 -17.01 16 10 N -0.71 -14.79 5.15 -435.93 -2.24 -17.04 16 11 C 0.12 3.21 3.51 46.39 0.16 3.38 16 12 H 0.10 2.82 7.55 -2.38 -0.02 2.80 16 13 C 0.04 1.08 7.42 72.69 0.54 1.62 16 14 O -0.37 -12.81 11.32 -148.98 -1.69 -14.49 16 15 C 0.07 2.65 1.66 -10.83 -0.02 2.63 16 16 C 0.13 5.16 8.20 83.40 0.68 5.84 16 17 N -0.63 -31.95 3.74 -739.10 -2.76 -34.71 16 18 C -0.23 -12.54 10.74 84.04 0.90 -11.64 16 19 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 21 N -0.95 -57.52 11.51 21.65 0.25 -57.27 16 22 Si 0.98 45.00 29.55 68.60 2.03 47.02 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.14 6.88 6.92 83.49 0.58 7.46 16 27 C -0.11 -3.31 6.11 31.39 0.19 -3.12 16 28 C -0.15 -2.56 7.46 31.12 0.23 -2.33 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.19 7.87 -2.39 -0.02 1.18 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.09 1.62 7.67 -2.39 -0.02 1.60 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.22 7.84 -2.38 -0.02 1.20 16 40 H 0.41 6.93 8.63 -92.71 -0.80 6.13 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.07 2.46 7.91 -2.39 -0.02 2.44 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 45 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 46 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.05 2.47 6.93 -2.39 -0.02 2.45 16 48 H 0.08 2.75 7.82 -2.39 -0.02 2.73 16 49 H 0.10 2.76 7.70 -2.39 -0.02 2.74 16 50 H 0.08 1.48 7.90 -2.39 -0.02 1.46 16 51 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -71.67 410.71 0.24 -71.43 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.11 Total: 21.02 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.13 Total: 9.40 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.76 Total: -109.02 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -3.28 Total: -39.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.67 0.24 -71.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053902968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.755 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds