Wall clock time and date at job start Tue Mar 31 2020 21:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61544 * 249.13916 * 4 3 2 6 6 C 1.53962 * 87.01788 * 220.04555 * 5 4 3 7 7 C 1.52997 * 113.74075 * 139.94084 * 6 5 4 8 8 C 1.50700 * 109.47035 * 87.40480 * 7 6 5 9 9 O 1.21283 * 119.99861 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99899 * 180.02562 * 8 7 6 11 11 C 1.47045 * 120.11736 * 359.72658 * 10 8 7 12 12 C 1.53986 * 107.12317 * 130.15841 * 11 10 8 13 13 O 1.42655 * 108.29499 * 55.83671 * 12 11 10 14 14 C 1.42764 * 115.69049 * 295.41518 * 13 12 11 15 15 H 1.09003 * 112.23061 * 290.72318 * 14 13 12 16 16 C 1.55407 * 107.08981 * 166.04840 * 14 13 12 17 17 N 1.47479 * 104.78082 * 281.68945 * 16 14 13 18 18 C 1.36940 * 125.68158 * 155.59955 * 17 16 14 19 19 H 1.08007 * 119.99545 * 179.97438 * 18 17 16 20 20 C 1.38805 * 120.00544 * 359.97438 * 18 17 16 21 21 N 1.31621 * 120.00003 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00319 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46783 * 89.99851 * 22 20 18 24 24 H 1.48495 * 109.47129 * 209.99847 * 22 20 18 25 25 H 1.48498 * 109.46846 * 329.99763 * 22 20 18 26 26 C 1.47211 * 108.63015 * 335.59881 * 17 16 14 27 27 C 1.45664 * 120.11403 * 179.97438 * 10 8 7 28 28 H 1.08999 * 109.96056 * 345.48442 * 27 10 8 29 29 C 1.53783 * 113.61627 * 151.52851 * 4 3 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 35 35 H 1.09003 * 112.84866 * 20.32962 * 4 3 2 36 36 H 1.08998 * 113.61520 * 334.56415 * 5 4 3 37 37 H 1.08992 * 113.61555 * 105.47132 * 5 4 3 38 38 H 1.08994 * 113.53698 * 270.80988 * 6 5 4 39 39 H 1.09000 * 109.46892 * 207.40284 * 7 6 5 40 40 H 1.09000 * 109.47202 * 327.40475 * 7 6 5 41 41 H 1.09003 * 109.87567 * 249.67844 * 11 10 8 42 42 H 1.08995 * 109.88262 * 10.75284 * 11 10 8 43 43 H 1.09007 * 109.83425 * 296.08064 * 12 11 10 44 44 H 1.08996 * 109.65013 * 175.49331 * 12 11 10 45 45 H 1.09001 * 110.37348 * 40.51980 * 16 14 13 46 46 H 1.09004 * 110.37690 * 162.86394 * 16 14 13 47 47 H 0.96996 * 120.00318 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.96275 * 241.89975 * 26 17 16 49 49 H 1.08998 * 109.96412 * 120.65152 * 26 17 16 50 50 H 1.09000 * 113.61597 * 254.52681 * 29 4 3 51 51 H 1.08999 * 113.61002 * 25.43730 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0048 2.0092 1.3175 6 6 4.9906 2.8198 0.4563 7 6 5.2342 4.2400 0.9707 8 6 6.3532 4.2236 1.9799 9 8 6.9015 3.1788 2.2605 10 7 6.7439 5.3699 2.5715 11 6 6.0842 6.6388 2.2296 12 6 5.6962 7.3197 3.5551 13 8 6.8732 7.4561 4.3497 14 6 7.4802 6.2348 4.7714 15 1 6.8731 5.7043 5.5051 16 6 8.9000 6.5877 5.2958 17 7 9.7160 6.7672 4.0806 18 6 10.8587 7.5163 3.9893 19 1 11.3863 7.5841 3.0492 20 6 11.3391 8.1884 5.1047 21 7 10.6960 8.1062 6.2502 22 14 12.8976 9.2109 4.9799 23 1 12.5471 10.6030 4.5999 24 1 13.5926 9.2160 6.2922 25 1 13.7917 8.6263 3.9484 26 6 9.0975 6.0070 2.9821 27 6 7.8248 5.3569 3.5478 28 1 8.0251 4.3343 3.8677 29 6 3.9474 2.7435 -0.6711 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.9273 0.5546 -0.3481 36 1 3.3020 2.6277 1.8758 37 1 4.4850 1.2500 1.9346 38 1 5.9144 2.2861 0.2333 39 1 5.5065 4.8867 0.1366 40 1 4.3260 4.6168 1.4412 41 1 6.7706 7.2743 1.6700 42 1 5.1908 6.4440 1.6363 43 1 4.9648 6.7089 4.0845 44 1 5.2743 8.3039 3.3519 45 1 8.8721 7.5111 5.8743 46 1 9.2948 5.7715 5.9009 47 1 11.0314 8.5762 7.0295 48 1 9.7837 5.2369 2.6300 49 1 8.8398 6.6789 2.1635 50 1 4.3815 2.5761 -1.6568 51 1 3.2289 3.5630 -0.6574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083172943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:31 Heat of formation + Delta-G solvation = -64.926077 kcal Electronic energy + Delta-G solvation = -30415.037792 eV Core-core repulsion = 26316.571605 eV Total energy + Delta-G solvation = -4098.466186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61158 -39.66471 -38.24342 -36.64082 -35.68878 -34.61161 -32.34081 -31.55943 -30.11616 -29.72208 -27.66588 -27.16024 -25.93800 -24.54065 -23.43393 -23.21267 -22.90499 -20.58298 -20.30828 -19.67484 -18.46073 -17.29015 -17.19590 -16.93128 -16.41264 -15.97195 -15.80287 -15.39764 -15.29857 -15.04149 -14.44219 -14.38031 -14.29035 -13.62850 -13.56331 -13.35802 -13.00358 -12.84417 -12.75166 -12.64948 -12.36988 -12.32303 -11.96764 -11.79693 -11.61386 -11.50506 -11.18021 -11.10438 -11.05842 -10.96923 -10.84879 -10.75911 -10.62306 -10.52798 -10.14956 -9.84876 -9.77318 -9.66946 -9.50557 -9.43481 -8.66903 -8.21550 -6.83123 -5.63837 -3.05062 2.72323 3.01397 3.40476 3.42662 3.47241 3.49327 4.19468 4.21150 4.33606 4.50345 4.52179 4.56086 4.72415 4.73304 4.81758 4.91322 4.94603 5.01682 5.04844 5.22147 5.27410 5.29345 5.32293 5.39848 5.44778 5.47615 5.50720 5.53514 5.54657 5.56925 5.70541 5.73236 5.74667 5.83351 5.85693 5.89190 5.97400 6.08516 6.19379 6.28704 6.51272 6.65624 6.86536 6.99671 7.25484 7.50862 7.60126 7.74684 7.92179 8.28559 8.38015 9.21722 9.82841 10.46113 11.40857 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.002142 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.425354 B =13069.183866 C =13314.272151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.061 3.939 5 C -0.147 4.147 6 C -0.092 4.092 7 C -0.127 4.127 8 C 0.512 3.488 9 O -0.541 6.541 10 N -0.601 5.601 11 C 0.071 3.929 12 C 0.047 3.953 13 O -0.354 6.354 14 C 0.053 3.947 15 H 0.069 0.931 16 C 0.160 3.840 17 N -0.595 5.595 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.137 3.863 27 C 0.100 3.900 28 H 0.105 0.895 29 C -0.131 4.131 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.031 0.969 47 H 0.253 0.747 48 H 0.026 0.974 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.968 -11.162 -12.393 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.004 3.996 5 C -0.185 4.185 6 C -0.111 4.111 7 C -0.167 4.167 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.334 5.334 11 C -0.052 4.052 12 C -0.031 4.031 13 O -0.272 6.272 14 C -0.006 4.006 15 H 0.087 0.913 16 C 0.035 3.965 17 N -0.321 5.321 18 C -0.347 4.347 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.010 3.990 27 C -0.004 4.004 28 H 0.123 0.877 29 C -0.169 4.169 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.141 0.859 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.045 0.955 50 H 0.091 0.909 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.563 -11.253 -12.061 25.589 hybrid contribution 0.804 0.063 -0.205 0.833 sum -18.758 -11.191 -12.266 25.051 Atomic orbital electron populations 1.21750 0.93877 1.02176 1.03094 1.22494 0.95524 0.84161 0.99970 1.87942 1.20863 1.26131 1.94649 1.23678 0.80771 0.97937 0.97251 1.23568 0.97792 1.00205 0.96889 1.22112 0.97959 0.94804 0.96239 1.21654 0.97905 0.98700 0.98394 1.20693 0.84260 0.83178 0.81822 1.90676 1.56880 1.30712 1.63533 1.47775 1.35840 1.07378 1.42372 1.22634 0.97989 0.85817 0.98754 1.22923 0.88860 1.00847 0.90513 1.88013 1.40211 1.29599 1.69346 1.24198 0.97649 0.85036 0.93729 0.91308 1.22137 0.81678 1.03063 0.89604 1.44334 1.27203 1.55389 1.05213 1.19041 0.98557 1.21018 0.96074 0.90459 1.24772 0.99452 1.00814 0.95537 1.69728 1.39990 1.46985 1.00399 0.86044 0.82350 0.80147 0.76770 1.21604 1.21651 1.20797 1.21346 0.91410 0.93892 0.92375 1.22322 0.87252 1.01615 0.89211 0.87709 1.23298 0.97675 0.97787 0.98101 0.91220 0.91924 0.91838 0.93396 0.93516 0.89645 0.89456 0.90975 0.87903 0.88642 0.88818 0.90083 0.89273 0.93468 0.88292 0.85923 0.95172 0.93637 0.95573 0.95527 0.90860 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.41 6.50 37.16 0.24 0.65 16 3 O -0.38 -3.68 10.35 -35.23 -0.36 -4.04 16 4 C 0.06 0.54 4.29 -25.92 -0.11 0.43 16 5 C -0.15 -1.46 7.48 -25.82 -0.19 -1.66 16 6 C -0.09 -0.91 3.15 -89.71 -0.28 -1.19 16 7 C -0.13 -1.26 3.88 -27.88 -0.11 -1.37 16 8 C 0.51 7.52 7.68 -10.98 -0.08 7.44 16 9 O -0.54 -9.84 15.16 5.55 0.08 -9.75 16 10 N -0.60 -9.29 2.72 -164.38 -0.45 -9.74 16 11 C 0.07 0.89 6.30 -3.23 -0.02 0.87 16 12 C 0.05 0.64 7.04 37.67 0.27 0.90 16 13 O -0.35 -6.91 10.09 -35.23 -0.36 -7.27 16 14 C 0.05 1.06 4.12 -24.67 -0.10 0.96 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 16 C 0.16 3.96 5.47 -2.23 -0.01 3.94 16 17 N -0.60 -15.57 3.40 -169.95 -0.58 -16.15 16 18 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 22 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.14 3.04 6.88 -3.29 -0.02 3.01 16 27 C 0.10 1.92 3.09 -67.24 -0.21 1.71 16 28 H 0.10 2.12 7.06 -51.93 -0.37 1.75 16 29 C -0.13 -1.06 7.47 -25.92 -0.19 -1.26 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.16 7.67 -51.93 -0.40 0.76 16 39 H 0.10 0.79 7.99 -51.93 -0.41 0.38 16 40 H 0.09 0.78 7.33 -51.93 -0.38 0.40 16 41 H 0.08 1.10 7.55 -51.93 -0.39 0.70 16 42 H 0.09 0.76 5.95 -51.93 -0.31 0.45 16 43 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 3.42 5.85 -51.93 -0.30 3.12 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.03 0.59 7.23 -51.93 -0.38 0.22 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -33.25 396.45 -9.65 -42.90 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.80 Total: 0.05 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.70 Total: 7.18 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.47 Total: -52.30 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.64 Total: -21.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.25 -9.65 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.029 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds