Wall clock time and date at job start Tue Mar 31 2020 21:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61544 * 249.13916 * 4 3 2 6 6 C 1.53962 * 87.01788 * 220.04555 * 5 4 3 7 7 C 1.52997 * 113.74075 * 139.94084 * 6 5 4 8 8 C 1.50700 * 109.47035 * 87.40480 * 7 6 5 9 9 O 1.21283 * 119.99861 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99899 * 180.02562 * 8 7 6 11 11 C 1.47045 * 120.11736 * 359.72658 * 10 8 7 12 12 C 1.53986 * 107.12317 * 130.15841 * 11 10 8 13 13 O 1.42655 * 108.29499 * 55.83671 * 12 11 10 14 14 C 1.42764 * 115.69049 * 295.41518 * 13 12 11 15 15 H 1.09003 * 112.23061 * 290.72318 * 14 13 12 16 16 C 1.55407 * 107.08981 * 166.04840 * 14 13 12 17 17 N 1.47479 * 104.78082 * 281.68945 * 16 14 13 18 18 C 1.36940 * 125.68158 * 155.59955 * 17 16 14 19 19 H 1.08007 * 119.99545 * 179.97438 * 18 17 16 20 20 C 1.38805 * 120.00544 * 359.97438 * 18 17 16 21 21 N 1.31621 * 120.00003 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00319 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46783 * 89.99851 * 22 20 18 24 24 H 1.48495 * 109.47129 * 209.99847 * 22 20 18 25 25 H 1.48498 * 109.46846 * 329.99763 * 22 20 18 26 26 C 1.47211 * 108.63015 * 335.59881 * 17 16 14 27 27 C 1.45664 * 120.11403 * 179.97438 * 10 8 7 28 28 H 1.08999 * 109.96056 * 345.48442 * 27 10 8 29 29 C 1.53783 * 113.61627 * 151.52851 * 4 3 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 35 35 H 1.09003 * 112.84866 * 20.32962 * 4 3 2 36 36 H 1.08998 * 113.61520 * 334.56415 * 5 4 3 37 37 H 1.08992 * 113.61555 * 105.47132 * 5 4 3 38 38 H 1.08994 * 113.53698 * 270.80988 * 6 5 4 39 39 H 1.09000 * 109.46892 * 207.40284 * 7 6 5 40 40 H 1.09000 * 109.47202 * 327.40475 * 7 6 5 41 41 H 1.09003 * 109.87567 * 249.67844 * 11 10 8 42 42 H 1.08995 * 109.88262 * 10.75284 * 11 10 8 43 43 H 1.09007 * 109.83425 * 296.08064 * 12 11 10 44 44 H 1.08996 * 109.65013 * 175.49331 * 12 11 10 45 45 H 1.09001 * 110.37348 * 40.51980 * 16 14 13 46 46 H 1.09004 * 110.37690 * 162.86394 * 16 14 13 47 47 H 0.96996 * 120.00318 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.96275 * 241.89975 * 26 17 16 49 49 H 1.08998 * 109.96412 * 120.65152 * 26 17 16 50 50 H 1.09000 * 113.61597 * 254.52681 * 29 4 3 51 51 H 1.08999 * 113.61002 * 25.43730 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0048 2.0092 1.3175 6 6 4.9906 2.8198 0.4563 7 6 5.2342 4.2400 0.9707 8 6 6.3532 4.2236 1.9799 9 8 6.9015 3.1788 2.2605 10 7 6.7439 5.3699 2.5715 11 6 6.0842 6.6388 2.2296 12 6 5.6962 7.3197 3.5551 13 8 6.8732 7.4561 4.3497 14 6 7.4802 6.2348 4.7714 15 1 6.8731 5.7043 5.5051 16 6 8.9000 6.5877 5.2958 17 7 9.7160 6.7672 4.0806 18 6 10.8587 7.5163 3.9893 19 1 11.3863 7.5841 3.0492 20 6 11.3391 8.1884 5.1047 21 7 10.6960 8.1062 6.2502 22 14 12.8976 9.2109 4.9799 23 1 12.5471 10.6030 4.5999 24 1 13.5926 9.2160 6.2922 25 1 13.7917 8.6263 3.9484 26 6 9.0975 6.0070 2.9821 27 6 7.8248 5.3569 3.5478 28 1 8.0251 4.3343 3.8677 29 6 3.9474 2.7435 -0.6711 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.9273 0.5546 -0.3481 36 1 3.3020 2.6277 1.8758 37 1 4.4850 1.2500 1.9346 38 1 5.9144 2.2861 0.2333 39 1 5.5065 4.8867 0.1366 40 1 4.3260 4.6168 1.4412 41 1 6.7706 7.2743 1.6700 42 1 5.1908 6.4440 1.6363 43 1 4.9648 6.7089 4.0845 44 1 5.2743 8.3039 3.3519 45 1 8.8721 7.5111 5.8743 46 1 9.2948 5.7715 5.9009 47 1 11.0314 8.5762 7.0295 48 1 9.7837 5.2369 2.6300 49 1 8.8398 6.6789 2.1635 50 1 4.3815 2.5761 -1.6568 51 1 3.2289 3.5630 -0.6574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083172943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:30 Heat of formation + Delta-G solvation = -86.552565 kcal Electronic energy + Delta-G solvation = -30415.975586 eV Core-core repulsion = 26316.571605 eV Total energy + Delta-G solvation = -4099.403981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83409 -40.57499 -39.47068 -37.40463 -37.35437 -35.93562 -34.23022 -32.24114 -31.49851 -30.85924 -29.20252 -28.77857 -26.62556 -26.37844 -24.43989 -24.25902 -23.57429 -22.28336 -21.75844 -20.44229 -19.73005 -19.04903 -18.34055 -18.00769 -17.69369 -16.92643 -16.77457 -16.57935 -16.54271 -16.26237 -16.03852 -15.61755 -15.40286 -15.03105 -14.86104 -14.49021 -14.11760 -13.95233 -13.74542 -13.54805 -13.49865 -13.32067 -13.14281 -13.07401 -13.04673 -12.72773 -12.60795 -12.57413 -12.23119 -12.15541 -12.10293 -12.04458 -11.82739 -11.74650 -11.56555 -11.34440 -11.24271 -11.00580 -10.81133 -10.70488 -10.32480 -9.55007 -8.93033 -7.78428 -5.23588 1.46557 1.49273 1.57546 1.59265 1.82249 2.49524 2.79496 2.86000 3.32212 3.35996 3.54008 3.59483 3.63979 3.78086 3.87273 3.88883 3.92464 4.04055 4.14524 4.17650 4.21526 4.23341 4.29318 4.36556 4.38992 4.51328 4.54458 4.63314 4.67856 4.73219 4.78957 4.80872 4.87373 4.89319 4.91918 4.93510 4.96090 5.04162 5.11429 5.25584 5.28036 5.29378 5.43722 5.44759 5.48058 5.72451 6.23505 6.36989 6.37393 6.48431 7.06822 7.13068 7.72608 8.36288 9.23945 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.002142 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.425354 B =13069.183866 C =13314.272151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.060 3.940 5 C -0.151 4.151 6 C -0.094 4.094 7 C -0.117 4.117 8 C 0.508 3.492 9 O -0.582 6.582 10 N -0.602 5.602 11 C 0.072 3.928 12 C 0.038 3.962 13 O -0.387 6.387 14 C 0.073 3.927 15 H 0.089 0.911 16 C 0.162 3.838 17 N -0.614 5.614 18 C -0.240 4.240 19 H 0.079 0.921 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.984 3.016 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.272 1.272 26 C 0.139 3.861 27 C 0.115 3.885 28 H 0.089 0.911 29 C -0.116 4.116 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.007 0.993 47 H 0.249 0.751 48 H 0.013 0.987 49 H 0.030 0.970 50 H 0.085 0.915 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.241 -10.730 -14.617 28.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.002 3.998 5 C -0.189 4.189 6 C -0.113 4.113 7 C -0.156 4.156 8 C 0.299 3.701 9 O -0.462 6.462 10 N -0.335 5.335 11 C -0.050 4.050 12 C -0.039 4.039 13 O -0.305 6.305 14 C 0.013 3.987 15 H 0.106 0.894 16 C 0.036 3.964 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.097 0.903 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.812 3.188 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.197 1.197 26 C 0.012 3.988 27 C 0.010 3.990 28 H 0.107 0.893 29 C -0.154 4.154 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.159 0.841 43 H 0.083 0.917 44 H 0.145 0.855 45 H 0.107 0.893 46 H 0.025 0.975 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.048 0.952 50 H 0.104 0.896 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.878 -10.823 -14.323 28.301 hybrid contribution 1.468 -0.119 0.472 1.546 sum -20.410 -10.942 -13.851 26.984 Atomic orbital electron populations 1.21760 0.92952 1.03230 1.02718 1.22673 0.96352 0.83404 1.00457 1.87914 1.21135 1.27432 1.94692 1.23718 0.80658 0.98770 0.96623 1.23589 0.97974 1.00053 0.97281 1.22043 0.97518 0.94579 0.97135 1.21744 0.96698 0.99418 0.97753 1.21626 0.84661 0.82038 0.81743 1.90667 1.58457 1.32254 1.64825 1.47864 1.34880 1.09076 1.41682 1.22874 0.99439 0.84044 0.98608 1.23325 0.87031 1.03155 0.90354 1.87935 1.42680 1.29244 1.70675 1.23786 0.95217 0.85487 0.94187 0.89388 1.21863 0.84852 1.00577 0.89094 1.44576 1.27217 1.55616 1.06632 1.19388 0.99647 1.21495 0.96331 0.90346 1.25643 1.02653 1.02087 0.95257 1.69991 1.41226 1.47583 1.00802 0.84999 0.78648 0.78461 0.76688 1.21038 1.21794 1.19716 1.21390 0.92524 0.93240 0.91602 1.21817 0.87317 1.00002 0.89902 0.89267 1.23222 0.96804 0.97484 0.97872 0.89513 0.91983 0.92467 0.93454 0.92504 0.89090 0.89347 0.92861 0.89826 0.85881 0.86045 0.91014 0.84139 0.91667 0.85521 0.89255 0.97519 0.94119 0.96862 0.95229 0.89614 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.63 6.50 71.98 0.47 1.10 16 3 O -0.39 -6.90 10.35 -148.98 -1.54 -8.44 16 4 C 0.06 0.95 4.29 31.12 0.13 1.08 16 5 C -0.15 -2.80 7.48 31.18 0.23 -2.57 16 6 C -0.09 -1.63 3.15 -10.21 -0.03 -1.66 16 7 C -0.12 -1.89 3.88 29.85 0.12 -1.77 16 8 C 0.51 13.97 7.68 87.66 0.67 14.64 16 9 O -0.58 -21.11 15.16 -3.04 -0.05 -21.15 16 10 N -0.60 -17.49 2.72 -792.38 -2.15 -19.64 16 11 C 0.07 1.54 6.30 86.61 0.55 2.09 16 12 C 0.04 0.92 7.04 72.32 0.51 1.43 16 13 O -0.39 -14.78 10.09 -148.98 -1.50 -16.29 16 14 C 0.07 2.92 4.12 31.93 0.13 3.05 16 15 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 16 C 0.16 8.34 5.47 87.02 0.48 8.81 16 17 N -0.61 -33.27 3.40 -691.61 -2.35 -35.62 16 18 C -0.24 -13.94 10.28 84.03 0.86 -13.08 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.69 5.49 84.86 0.47 -3.23 16 21 N -0.95 -57.29 10.09 21.65 0.22 -57.07 16 22 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C 0.14 6.31 6.88 86.48 0.59 6.91 16 27 C 0.12 4.44 3.09 45.89 0.14 4.58 16 28 H 0.09 3.71 7.06 -2.39 -0.02 3.69 16 29 C -0.12 -1.51 7.47 31.12 0.23 -1.28 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 1.30 7.88 -2.39 -0.02 1.28 16 36 H 0.09 1.60 7.91 -2.39 -0.02 1.58 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.80 7.67 -2.39 -0.02 1.79 16 39 H 0.12 1.40 7.99 -2.39 -0.02 1.38 16 40 H 0.12 1.37 7.33 -2.39 -0.02 1.35 16 41 H 0.07 1.72 7.55 -2.39 -0.02 1.70 16 42 H 0.14 1.57 5.95 -2.39 -0.01 1.56 16 43 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.09 5.24 5.85 -2.39 -0.01 5.22 16 46 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 49 H 0.03 1.32 7.23 -2.39 -0.02 1.30 16 50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -76.16 396.45 1.84 -74.31 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.90 Total: 16.06 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.29 Total: 19.27 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.29 Total: -112.34 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -3.09 Total: -45.87 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.16 1.84 -74.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.239 kcal (2) G-P(sol) polarization free energy of solvation -76.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds