Wall clock time and date at job start Tue Mar 31 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47242 * 2 1 4 4 C 1.42902 * 114.00095 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.56176 * 355.68870 * 4 3 2 6 6 C 1.53073 * 117.51109 * 141.38960 * 4 3 2 7 7 C 1.52994 * 117.49833 * 209.99686 * 4 3 2 8 8 H 1.09000 * 117.49764 * 144.99477 * 7 4 3 9 9 C 1.50697 * 117.49955 * 0.02562 * 7 4 3 10 10 O 1.21287 * 120.00165 * 0.08778 * 9 7 4 11 11 N 1.34777 * 120.00460 * 180.08763 * 9 7 4 12 12 C 1.46922 * 120.63765 * 180.02562 * 11 9 7 13 13 C 1.53190 * 108.77669 * 233.63190 * 12 11 9 14 14 C 1.53045 * 109.30936 * 305.35973 * 13 12 11 15 15 O 1.42897 * 109.46148 * 181.38468 * 14 13 12 16 16 C 1.42900 * 114.00283 * 149.99527 * 15 14 13 17 17 C 1.53498 * 114.20842 * 150.00115 * 16 15 14 18 18 N 1.47067 * 88.04769 * 87.55075 * 17 16 15 19 19 C 1.36928 * 136.05856 * 207.12430 * 18 17 16 20 20 H 1.08005 * 120.00437 * 6.96170 * 19 18 17 21 21 C 1.38821 * 119.99962 * 186.96442 * 19 18 17 22 22 N 1.31612 * 119.99977 * 7.45058 * 21 19 18 23 23 Si 1.86797 * 119.99911 * 187.45269 * 21 19 18 24 24 H 1.48497 * 109.47457 * 94.80355 * 23 21 19 25 25 H 1.48503 * 109.47114 * 214.80600 * 23 21 19 26 26 H 1.48500 * 109.47359 * 334.80013 * 23 21 19 27 27 C 1.47069 * 87.88294 * 27.09369 * 18 17 16 28 28 C 1.53036 * 109.53816 * 61.36378 * 14 13 12 29 29 C 1.46930 * 120.62619 * 0.02562 * 11 9 7 30 30 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46933 * 299.99868 * 1 2 3 32 32 H 1.09001 * 109.47241 * 60.00042 * 1 2 3 33 33 H 1.09006 * 109.47386 * 239.99656 * 2 1 3 34 34 H 1.09001 * 109.47241 * 119.99958 * 2 1 3 35 35 H 1.08996 * 117.51325 * 0.02562 * 6 4 3 36 36 H 1.09007 * 117.51139 * 214.95463 * 6 4 3 37 37 H 1.08995 * 109.59010 * 113.83747 * 12 11 9 38 38 H 1.09005 * 109.70217 * 353.48370 * 12 11 9 39 39 H 1.08996 * 109.50155 * 185.41100 * 13 12 11 40 40 H 1.08995 * 109.52822 * 65.32565 * 13 12 11 41 41 H 1.08999 * 109.45941 * 301.35902 * 14 13 12 42 42 H 1.09001 * 113.40919 * 16.80548 * 16 15 14 43 43 H 1.09008 * 113.46489 * 332.74536 * 17 16 15 44 44 H 1.08991 * 113.47102 * 202.36463 * 17 16 15 45 45 H 0.97000 * 120.00140 * 180.02562 * 22 21 19 46 46 H 1.09007 * 113.46880 * 87.65761 * 27 18 17 47 47 H 1.08999 * 113.46889 * 218.03609 * 27 18 17 48 48 H 1.09002 * 109.49941 * 58.58913 * 28 14 13 49 49 H 1.08998 * 109.50109 * 178.67959 * 28 14 13 50 50 H 1.08997 * 109.58912 * 246.15897 * 29 11 9 51 51 H 1.08998 * 109.58827 * 6.58140 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5198 0.0730 6 6 4.0517 2.5736 -0.8479 7 6 4.0426 2.6874 0.6778 8 1 4.9911 2.5545 1.1981 9 6 3.0968 3.6845 1.2960 10 8 1.8996 3.4968 1.2454 11 7 3.5811 4.7849 1.9052 12 6 2.6717 5.7658 2.5130 13 6 2.9921 7.1525 1.9464 14 6 4.4769 7.4557 2.1598 15 8 4.7726 8.7618 1.6614 16 6 5.8374 9.4198 2.3508 17 6 6.6397 10.3986 1.4821 18 7 5.6622 11.4378 1.8388 19 6 5.1895 12.5864 1.2623 20 1 5.4780 12.8427 0.2536 21 6 4.3395 13.4216 1.9744 22 7 4.1042 13.1896 3.2484 23 14 3.5298 14.8745 1.1245 24 1 2.1778 14.4814 0.6524 25 1 3.4109 16.0042 2.0811 26 1 4.3568 15.2933 -0.0356 27 6 5.4151 10.7002 3.0869 28 6 5.3228 6.4216 1.4133 29 6 5.0288 5.0264 1.9741 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.3735 3.2204 -1.4045 36 1 5.0062 2.3658 -1.3314 37 1 2.8102 5.7718 3.5941 38 1 1.6397 5.5048 2.2784 39 1 2.3903 7.9029 2.4590 40 1 2.7665 7.1715 0.8802 41 1 4.7070 7.4125 3.2243 42 1 6.4514 8.7435 2.9455 43 1 6.6344 10.1431 0.4224 44 1 7.6417 10.5960 1.8629 45 1 3.5099 13.7729 3.7459 46 1 6.0907 10.9775 3.8961 47 1 4.3688 10.7021 3.3924 48 1 5.0754 6.4469 0.3520 49 1 6.3799 6.6518 1.5464 50 1 5.3594 4.9722 3.0113 51 1 5.5529 4.2764 1.3817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093510429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:08 Heat of formation + Delta-G solvation = -49.721658 kcal Electronic energy + Delta-G solvation = -29842.313886 eV Core-core repulsion = 25744.507013 eV Total energy + Delta-G solvation = -4097.806873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42277 -40.39486 -39.32637 -38.34747 -36.63067 -36.08477 -34.17741 -32.75405 -32.06808 -31.60284 -29.55226 -26.72178 -26.34788 -25.10035 -24.82445 -23.77692 -23.70181 -23.02855 -21.66815 -21.14451 -19.80416 -18.94621 -18.72148 -17.71251 -17.24909 -16.96484 -16.66840 -16.39964 -16.21177 -15.99575 -15.86814 -15.60090 -15.23776 -15.18012 -14.84763 -14.59717 -14.27349 -14.04125 -13.78938 -13.57150 -13.49571 -13.33340 -13.21400 -13.17675 -13.00708 -12.81550 -12.77502 -12.52166 -12.25544 -12.22016 -12.09216 -11.86512 -11.80797 -11.63490 -11.46089 -11.39420 -11.18704 -10.89677 -10.69048 -10.15128 -10.01105 -9.66998 -8.91123 -7.93140 -5.22700 1.41619 1.45221 1.53213 1.53949 1.97515 2.46510 2.62617 2.66804 2.91513 3.31164 3.49664 3.51871 3.69930 3.83302 3.84674 3.89587 3.96796 4.05982 4.11981 4.18730 4.20822 4.27180 4.30603 4.38663 4.44064 4.50852 4.51472 4.57932 4.67768 4.77179 4.80201 4.83392 4.85896 4.86420 4.90953 4.97021 4.99926 5.02842 5.05337 5.15128 5.20458 5.24486 5.26372 5.35022 5.49077 5.55739 5.93085 6.39688 6.47878 6.60353 6.90828 7.26760 7.59909 8.62415 9.26331 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021444 B = 0.002059 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.419392 B =13594.038955 C =14117.765854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.366 6.366 4 C 0.041 3.959 5 H 0.153 0.847 6 C -0.152 4.152 7 C -0.201 4.201 8 H 0.167 0.833 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.124 3.876 13 C -0.125 4.125 14 C 0.083 3.917 15 O -0.373 6.373 16 C 0.066 3.934 17 C 0.112 3.888 18 N -0.639 5.639 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.072 4.072 22 N -0.955 5.955 23 Si 0.978 3.022 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.265 1.265 27 C 0.136 3.864 28 C -0.147 4.147 29 C 0.112 3.888 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.247 0.753 46 H 0.034 0.966 47 H 0.022 0.978 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.093 0.907 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -31.568 -3.497 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.285 6.285 4 C -0.018 4.018 5 H 0.171 0.829 6 C -0.190 4.190 7 C -0.222 4.222 8 H 0.184 0.816 9 C 0.321 3.679 10 O -0.445 6.445 11 N -0.347 5.347 12 C 0.001 3.999 13 C -0.164 4.164 14 C 0.026 3.974 15 O -0.292 6.292 16 C 0.007 3.993 17 C -0.013 4.013 18 N -0.365 5.365 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.265 4.265 22 N -0.604 5.604 23 Si 0.806 3.194 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.189 1.189 27 C 0.010 3.990 28 C -0.185 4.185 29 C -0.009 4.009 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.111 0.889 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.972 -31.122 -3.719 31.594 hybrid contribution -0.721 1.539 0.089 1.702 sum 3.250 -29.583 -3.630 29.982 Atomic orbital electron populations 1.21740 0.94070 1.03061 1.01875 1.22711 0.95692 0.83025 1.01130 1.88145 1.19116 1.27417 1.93783 1.23000 0.82762 0.94334 1.01711 0.82937 1.23496 1.04025 1.01487 0.89976 1.22906 1.01866 0.99376 0.98010 0.81616 1.20283 0.88543 0.81748 0.77340 1.90732 1.17858 1.76483 1.59404 1.48257 1.08437 1.21602 1.56373 1.21398 0.94713 0.85974 0.97789 1.21886 0.96248 0.96860 1.01412 1.22290 0.94381 0.82581 0.98152 1.88015 1.53613 1.29734 1.57870 1.23632 0.88835 0.92484 0.94367 1.22881 0.93160 0.86584 0.98706 1.45851 1.44837 1.25228 1.20629 1.19302 1.22525 0.96815 0.96560 0.90098 1.25661 1.02403 1.01962 0.96460 1.70025 1.41034 1.41162 1.08174 0.85057 0.78355 0.78394 0.77549 1.21831 1.21807 1.18911 1.22564 0.98085 0.88710 0.89691 1.22400 1.01434 0.94300 1.00406 1.21995 0.78730 0.96786 1.03435 0.88697 0.93712 0.92995 0.91515 0.92310 0.90555 0.83416 0.89535 0.90676 0.91451 0.93062 0.90592 0.86653 0.93330 0.91450 0.94388 0.94859 0.95987 0.92294 0.88198 0.88873 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.05 0.76 6.53 71.98 0.47 1.23 16 3 O -0.37 -8.35 8.48 -127.82 -1.08 -9.43 16 4 C 0.04 0.59 6.41 30.62 0.20 0.79 16 5 H 0.15 1.01 7.93 -2.39 -0.02 0.99 16 6 C -0.15 -2.02 10.19 30.62 0.31 -1.70 16 7 C -0.20 -2.94 4.96 -11.54 -0.06 -3.00 16 8 H 0.17 1.08 6.82 -2.39 -0.02 1.06 16 9 C 0.53 12.94 7.48 87.66 0.66 13.60 16 10 O -0.57 -19.30 14.34 18.11 0.26 -19.04 16 11 N -0.61 -12.93 2.97 -818.87 -2.43 -15.36 16 12 C 0.12 3.01 6.43 86.36 0.56 3.56 16 13 C -0.13 -3.57 5.73 30.67 0.18 -3.39 16 14 C 0.08 2.21 2.46 30.62 0.08 2.29 16 15 O -0.37 -13.96 10.04 -148.98 -1.50 -15.45 16 16 C 0.07 2.35 4.50 30.97 0.14 2.49 16 17 C 0.11 4.51 8.52 83.18 0.71 5.21 16 18 N -0.64 -34.46 3.76 -738.35 -2.78 -37.24 16 19 C -0.22 -13.30 10.73 84.04 0.90 -12.40 16 20 H 0.08 4.62 7.84 -2.91 -0.02 4.60 16 21 C -0.07 -4.34 5.49 84.87 0.47 -3.88 16 22 N -0.95 -60.51 11.87 21.65 0.26 -60.25 16 23 Si 0.98 48.16 29.56 68.60 2.03 50.18 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.14 6.59 7.06 83.22 0.59 7.18 16 28 C -0.15 -2.76 5.69 30.68 0.17 -2.58 16 29 C 0.11 1.51 6.30 86.37 0.54 2.05 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.15 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.14 7.01 -2.38 -0.02 2.12 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.77 7.71 -2.39 -0.02 1.75 16 42 H 0.12 2.97 7.76 -2.39 -0.02 2.95 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.02 1.22 7.64 -2.39 -0.02 1.20 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.12 0.90 5.68 -2.39 -0.01 0.89 16 Total: -1.00 -86.32 408.07 2.29 -84.02 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.90 Total: 12.74 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.64 Total: 9.84 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.96 Total: -112.86 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -2.32 Total: -43.93 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.18 kcal Total: -86.32 2.29 -84.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093510429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.300 kcal (2) G-P(sol) polarization free energy of solvation -86.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds