Wall clock time and date at job start Tue Mar 31 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.42894 * 114.00279 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55014 * 4.41482 * 4 3 2 6 6 C 1.52998 * 117.49858 * 218.74921 * 4 3 2 7 7 C 1.53002 * 117.50211 * 150.08688 * 4 3 2 8 8 H 1.08997 * 117.49824 * 215.00207 * 7 4 3 9 9 C 1.50693 * 117.49636 * 0.02562 * 7 4 3 10 10 O 1.21287 * 120.00308 * 359.97438 * 9 7 4 11 11 N 1.34784 * 119.99987 * 180.02562 * 9 7 4 12 12 C 1.46927 * 120.63011 * 359.71622 * 11 9 7 13 13 C 1.53620 * 108.54416 * 126.37064 * 12 11 9 14 14 C 1.53039 * 109.24062 * 54.85655 * 13 12 11 15 15 O 1.42904 * 109.45958 * 178.49133 * 14 13 12 16 16 C 1.42894 * 113.99977 * 270.06818 * 15 14 13 17 17 C 1.53943 * 113.74211 * 248.73992 * 16 15 14 18 18 N 1.47817 * 86.03642 * 222.08720 * 17 16 15 19 19 C 1.36936 * 134.45391 * 204.65118 * 18 17 16 20 20 H 1.07997 * 119.99864 * 173.34484 * 19 18 17 21 21 C 1.38813 * 120.00008 * 353.33586 * 19 18 17 22 22 N 1.31623 * 120.00219 * 5.07535 * 21 19 18 23 23 Si 1.86805 * 120.00070 * 185.06299 * 21 19 18 24 24 H 1.48503 * 109.46659 * 94.99143 * 23 21 19 25 25 H 1.48497 * 109.47429 * 214.99106 * 23 21 19 26 26 H 1.48498 * 109.46945 * 334.99850 * 23 21 19 27 27 C 1.47576 * 91.04977 * 24.54749 * 18 17 16 28 28 C 1.53042 * 109.53959 * 298.51089 * 14 13 12 29 29 C 1.46929 * 120.63034 * 180.02562 * 11 9 7 30 30 H 1.09007 * 109.46721 * 299.99839 * 1 2 3 31 31 H 1.09001 * 109.46953 * 59.99661 * 1 2 3 32 32 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46217 * 240.00114 * 2 1 3 34 34 H 1.08993 * 109.47110 * 120.00621 * 2 1 3 35 35 H 1.09000 * 117.49840 * 359.97438 * 6 4 3 36 36 H 1.09002 * 117.50177 * 145.01710 * 6 4 3 37 37 H 1.08992 * 109.58413 * 246.20699 * 12 11 9 38 38 H 1.09005 * 109.58490 * 6.62893 * 12 11 9 39 39 H 1.09003 * 109.63504 * 294.86977 * 13 12 11 40 40 H 1.08994 * 109.45969 * 174.74258 * 13 12 11 41 41 H 1.08992 * 109.45059 * 58.52539 * 14 13 12 42 42 H 1.09001 * 112.94313 * 20.33185 * 16 15 14 43 43 H 1.09004 * 113.77171 * 336.34776 * 17 16 15 44 44 H 1.09000 * 113.76878 * 107.74570 * 17 16 15 45 45 H 0.96997 * 120.00056 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.76623 * 221.14865 * 27 18 17 47 47 H 1.08998 * 113.86930 * 89.77169 * 27 18 17 48 48 H 1.09001 * 109.49853 * 301.41327 * 28 14 13 49 49 H 1.08992 * 109.52533 * 181.33391 * 28 14 13 50 50 H 1.09001 * 109.58727 * 353.36770 * 29 11 9 51 51 H 1.08997 * 109.59098 * 113.79656 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9769 0.5197 -0.0767 6 6 4.0519 2.5707 0.8488 7 6 4.0421 2.6885 -0.6774 8 1 4.9901 2.5564 -1.1988 9 6 3.0957 3.6873 -1.2919 10 8 1.8984 3.5006 -1.2388 11 7 3.5797 4.7876 -1.9016 12 6 5.0272 5.0302 -1.9696 13 6 5.4154 5.2612 -3.4379 14 6 4.5610 6.3930 -4.0134 15 8 4.9427 6.6356 -5.3690 16 6 5.9819 7.6053 -5.5156 17 6 5.5163 8.9188 -6.1695 18 7 6.7790 8.8651 -6.9361 19 6 7.5686 9.8003 -7.5502 20 1 8.5224 9.5121 -7.9667 21 6 7.1429 11.1187 -7.6375 22 7 6.0287 11.4912 -7.0440 23 14 8.1516 12.3643 -8.5970 24 1 7.6195 12.4726 -9.9792 25 1 8.0686 13.6881 -7.9295 26 1 9.5684 11.9221 -8.6453 27 6 6.8483 7.4002 -6.7715 28 6 3.0839 5.9959 -3.9628 29 6 2.6695 5.7707 -2.5049 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3739 3.2157 1.4077 36 1 5.0067 2.3614 1.3312 37 1 5.2780 5.9115 -1.3794 38 1 5.5616 4.1633 -1.5809 39 1 5.2441 4.3492 -4.0099 40 1 6.4688 5.5347 -3.4962 41 1 4.7140 7.2981 -3.4256 42 1 6.5597 7.7502 -4.6028 43 1 4.6235 8.8106 -6.7855 44 1 5.4571 9.7578 -5.4762 45 1 5.7315 12.4125 -7.1047 46 1 7.8507 7.0290 -6.5581 47 1 6.3483 6.8432 -7.5639 48 1 2.9346 5.0770 -4.5298 49 1 2.4776 6.7922 -4.3944 50 1 1.6478 5.3926 -2.4695 51 1 2.7324 6.7111 -1.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093510432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:18 Heat of formation + Delta-G solvation = -33.154968 kcal Electronic energy + Delta-G solvation = -29565.566902 eV Core-core repulsion = 25468.478415 eV Total energy + Delta-G solvation = -4097.088487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55393 -39.04808 -38.27960 -37.16605 -35.46787 -35.33628 -32.25433 -31.60051 -31.14108 -30.96319 -27.47623 -25.76882 -24.77262 -24.03807 -23.27835 -23.15279 -22.62247 -22.38526 -20.69064 -19.45918 -18.99120 -18.06887 -16.93179 -16.67016 -16.28123 -15.96064 -15.80212 -15.53417 -15.00615 -14.92453 -14.45218 -14.43698 -14.10532 -13.80147 -13.74336 -13.23109 -13.13304 -12.93298 -12.77711 -12.65948 -12.45987 -12.41830 -11.97472 -11.86402 -11.70549 -11.49424 -11.39374 -11.24689 -11.18811 -11.12968 -10.88304 -10.82938 -10.67301 -10.45983 -10.24889 -9.98483 -9.77517 -9.53407 -9.39753 -8.80020 -8.77136 -8.71446 -6.89152 -5.79842 -3.11821 2.37197 2.79073 3.16813 3.38465 3.43156 3.45590 3.50606 3.97734 4.18909 4.39043 4.47871 4.52945 4.58292 4.68852 4.77602 4.83526 4.92639 4.94655 5.04079 5.05390 5.14286 5.17189 5.21176 5.27726 5.39294 5.42038 5.44510 5.48169 5.53346 5.57786 5.62214 5.62906 5.72002 5.73585 5.83720 5.87554 5.93569 6.10853 6.23624 6.41087 6.43929 6.63282 6.66779 6.97012 7.11687 7.22651 7.28102 7.52361 7.88445 7.96520 8.14386 9.02383 9.68387 10.58290 11.38013 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.001803 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.793964 B =15529.979961 C =15748.710735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.325 6.325 4 C 0.051 3.949 5 H 0.117 0.883 6 C -0.160 4.160 7 C -0.198 4.198 8 H 0.130 0.870 9 C 0.543 3.457 10 O -0.516 6.516 11 N -0.613 5.613 12 C 0.110 3.890 13 C -0.157 4.157 14 C 0.092 3.908 15 O -0.373 6.373 16 C 0.034 3.966 17 C 0.152 3.848 18 N -0.609 5.609 19 C -0.223 4.223 20 H 0.082 0.918 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.121 3.879 28 C -0.130 4.130 29 C 0.116 3.884 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.254 0.746 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -22.259 18.031 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.242 6.242 4 C -0.009 4.009 5 H 0.135 0.865 6 C -0.197 4.197 7 C -0.219 4.219 8 H 0.147 0.853 9 C 0.331 3.669 10 O -0.391 6.391 11 N -0.347 5.347 12 C -0.013 4.013 13 C -0.196 4.196 14 C 0.033 3.967 15 O -0.291 6.291 16 C -0.025 4.025 17 C 0.026 3.974 18 N -0.337 5.337 19 C -0.351 4.351 20 H 0.100 0.900 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.005 4.005 28 C -0.168 4.168 29 C -0.006 4.006 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.114 0.886 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.913 -21.977 17.797 28.891 hybrid contribution 1.010 0.776 -0.608 1.411 sum -4.903 -21.201 17.190 27.731 Atomic orbital electron populations 1.21707 0.93535 1.01955 1.03496 1.22549 0.95948 0.83913 0.99737 1.88170 1.16969 1.25511 1.93545 1.22551 0.83704 0.92959 1.01657 0.86527 1.23436 1.03060 1.02504 0.90745 1.22827 1.01497 1.00281 0.97336 0.85275 1.19473 0.88443 0.80918 0.78113 1.90750 1.15445 1.75176 1.57727 1.48130 1.07304 1.22497 1.56802 1.21846 0.80225 1.02212 0.96982 1.22560 1.00946 1.00833 0.95248 1.21952 0.93536 0.96329 0.84865 1.87963 1.55749 1.61219 1.24142 1.25033 0.89126 0.90274 0.98022 1.22694 0.89344 0.92781 0.92563 1.45675 1.24273 1.00206 1.63553 1.18994 0.98360 0.87610 1.30121 0.90047 1.24849 0.97481 0.97272 1.00766 1.69845 1.23250 1.16968 1.46434 0.86103 0.79177 0.80812 0.79708 1.21550 1.21669 1.20500 1.22719 0.96313 0.87684 0.93808 1.21986 0.95675 1.03147 0.96040 1.21598 0.94925 0.91605 0.92500 0.91900 0.91548 0.91237 0.93399 0.93511 0.87614 0.87080 0.91048 0.89514 0.90768 0.90312 0.92059 0.90273 0.94644 0.91388 0.93566 0.93726 0.94056 0.90906 0.89712 0.88607 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.44 6.53 37.16 0.24 0.68 16 3 O -0.32 -3.64 8.48 -57.36 -0.49 -4.13 16 4 C 0.05 0.42 6.40 -26.73 -0.17 0.25 16 5 H 0.12 0.62 7.93 -51.93 -0.41 0.21 16 6 C -0.16 -1.13 10.19 -26.69 -0.27 -1.40 16 7 C -0.20 -1.70 5.12 -91.73 -0.47 -2.17 16 8 H 0.13 0.80 6.57 -51.93 -0.34 0.46 16 9 C 0.54 6.62 7.48 -10.99 -0.08 6.54 16 10 O -0.52 -8.21 14.34 -16.58 -0.24 -8.45 16 11 N -0.61 -6.71 2.97 -172.48 -0.51 -7.22 16 12 C 0.11 0.97 6.37 -3.49 -0.02 0.94 16 13 C -0.16 -1.69 5.71 -26.39 -0.15 -1.84 16 14 C 0.09 1.22 2.45 -26.69 -0.07 1.16 16 15 O -0.37 -6.46 10.01 -35.23 -0.35 -6.82 16 16 C 0.03 0.66 4.29 -25.81 -0.11 0.54 16 17 C 0.15 3.68 7.27 -2.84 -0.02 3.66 16 18 N -0.61 -16.00 3.70 -177.97 -0.66 -16.66 16 19 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 20 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.49 11.51 55.49 0.64 -26.86 16 23 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.12 2.57 8.77 -2.97 -0.03 2.55 16 28 C -0.13 -1.61 5.73 -26.59 -0.15 -1.76 16 29 C 0.12 1.32 6.43 -3.69 -0.02 1.29 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.57 5.51 -51.93 -0.29 0.28 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.82 7.74 -51.93 -0.40 0.42 16 42 H 0.08 1.42 7.80 -51.93 -0.41 1.02 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.10 1.18 7.01 -51.93 -0.36 0.82 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -35.06 407.45 -10.59 -45.65 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.90 Total: -1.71 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.20 Total: 2.90 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.53 Total: -50.74 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.08 Total: -19.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.06 -10.59 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093510432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.497 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds