Wall clock time and date at job start Tue Mar 31 2020 21:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.42894 * 114.00279 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55014 * 4.41482 * 4 3 2 6 6 C 1.52998 * 117.49858 * 218.74921 * 4 3 2 7 7 C 1.53002 * 117.50211 * 150.08688 * 4 3 2 8 8 H 1.08997 * 117.49824 * 215.00207 * 7 4 3 9 9 C 1.50693 * 117.49636 * 0.02562 * 7 4 3 10 10 O 1.21287 * 120.00308 * 359.97438 * 9 7 4 11 11 N 1.34784 * 119.99987 * 180.02562 * 9 7 4 12 12 C 1.46927 * 120.63011 * 359.71622 * 11 9 7 13 13 C 1.53620 * 108.54416 * 126.37064 * 12 11 9 14 14 C 1.53039 * 109.24062 * 54.85655 * 13 12 11 15 15 O 1.42904 * 109.45958 * 178.49133 * 14 13 12 16 16 C 1.42894 * 113.99977 * 270.06818 * 15 14 13 17 17 C 1.53943 * 113.74211 * 248.73992 * 16 15 14 18 18 N 1.47817 * 86.03642 * 222.08720 * 17 16 15 19 19 C 1.36936 * 134.45391 * 204.65118 * 18 17 16 20 20 H 1.07997 * 119.99864 * 173.34484 * 19 18 17 21 21 C 1.38813 * 120.00008 * 353.33586 * 19 18 17 22 22 N 1.31623 * 120.00219 * 5.07535 * 21 19 18 23 23 Si 1.86805 * 120.00070 * 185.06299 * 21 19 18 24 24 H 1.48503 * 109.46659 * 94.99143 * 23 21 19 25 25 H 1.48497 * 109.47429 * 214.99106 * 23 21 19 26 26 H 1.48498 * 109.46945 * 334.99850 * 23 21 19 27 27 C 1.47576 * 91.04977 * 24.54749 * 18 17 16 28 28 C 1.53042 * 109.53959 * 298.51089 * 14 13 12 29 29 C 1.46929 * 120.63034 * 180.02562 * 11 9 7 30 30 H 1.09007 * 109.46721 * 299.99839 * 1 2 3 31 31 H 1.09001 * 109.46953 * 59.99661 * 1 2 3 32 32 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46217 * 240.00114 * 2 1 3 34 34 H 1.08993 * 109.47110 * 120.00621 * 2 1 3 35 35 H 1.09000 * 117.49840 * 359.97438 * 6 4 3 36 36 H 1.09002 * 117.50177 * 145.01710 * 6 4 3 37 37 H 1.08992 * 109.58413 * 246.20699 * 12 11 9 38 38 H 1.09005 * 109.58490 * 6.62893 * 12 11 9 39 39 H 1.09003 * 109.63504 * 294.86977 * 13 12 11 40 40 H 1.08994 * 109.45969 * 174.74258 * 13 12 11 41 41 H 1.08992 * 109.45059 * 58.52539 * 14 13 12 42 42 H 1.09001 * 112.94313 * 20.33185 * 16 15 14 43 43 H 1.09004 * 113.77171 * 336.34776 * 17 16 15 44 44 H 1.09000 * 113.76878 * 107.74570 * 17 16 15 45 45 H 0.96997 * 120.00056 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.76623 * 221.14865 * 27 18 17 47 47 H 1.08998 * 113.86930 * 89.77169 * 27 18 17 48 48 H 1.09001 * 109.49853 * 301.41327 * 28 14 13 49 49 H 1.08992 * 109.52533 * 181.33391 * 28 14 13 50 50 H 1.09001 * 109.58727 * 353.36770 * 29 11 9 51 51 H 1.08997 * 109.59098 * 113.79656 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9769 0.5197 -0.0767 6 6 4.0519 2.5707 0.8488 7 6 4.0421 2.6885 -0.6774 8 1 4.9901 2.5564 -1.1988 9 6 3.0957 3.6873 -1.2919 10 8 1.8984 3.5006 -1.2388 11 7 3.5797 4.7876 -1.9016 12 6 5.0272 5.0302 -1.9696 13 6 5.4154 5.2612 -3.4379 14 6 4.5610 6.3930 -4.0134 15 8 4.9427 6.6356 -5.3690 16 6 5.9819 7.6053 -5.5156 17 6 5.5163 8.9188 -6.1695 18 7 6.7790 8.8651 -6.9361 19 6 7.5686 9.8003 -7.5502 20 1 8.5224 9.5121 -7.9667 21 6 7.1429 11.1187 -7.6375 22 7 6.0287 11.4912 -7.0440 23 14 8.1516 12.3643 -8.5970 24 1 7.6195 12.4726 -9.9792 25 1 8.0686 13.6881 -7.9295 26 1 9.5684 11.9221 -8.6453 27 6 6.8483 7.4002 -6.7715 28 6 3.0839 5.9959 -3.9628 29 6 2.6695 5.7707 -2.5049 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3739 3.2157 1.4077 36 1 5.0067 2.3614 1.3312 37 1 5.2780 5.9115 -1.3794 38 1 5.5616 4.1633 -1.5809 39 1 5.2441 4.3492 -4.0099 40 1 6.4688 5.5347 -3.4962 41 1 4.7140 7.2981 -3.4256 42 1 6.5597 7.7502 -4.6028 43 1 4.6235 8.8106 -6.7855 44 1 5.4571 9.7578 -5.4762 45 1 5.7315 12.4125 -7.1047 46 1 7.8507 7.0290 -6.5581 47 1 6.3483 6.8432 -7.5639 48 1 2.9346 5.0770 -4.5298 49 1 2.4776 6.7922 -4.3944 50 1 1.6478 5.3926 -2.4695 51 1 2.7324 6.7111 -1.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093510432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:17 Heat of formation + Delta-G solvation = -54.798360 kcal Electronic energy + Delta-G solvation = -29566.505430 eV Core-core repulsion = 25468.478415 eV Total energy + Delta-G solvation = -4098.027015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41703 -40.30195 -39.29652 -38.34361 -36.71855 -36.07947 -34.16527 -32.78064 -32.06624 -31.59758 -29.44555 -26.77135 -26.55894 -25.03029 -24.73971 -23.76444 -23.67982 -23.00214 -21.67465 -21.14337 -19.86301 -18.87767 -18.76584 -17.96044 -17.34854 -16.98150 -16.66881 -16.42070 -16.32645 -16.01534 -15.74862 -15.52981 -15.37819 -14.96398 -14.83510 -14.53616 -14.18393 -13.89351 -13.74430 -13.54381 -13.39212 -13.30632 -13.20561 -13.13814 -13.00169 -12.85486 -12.81072 -12.72606 -12.26202 -12.23937 -12.08786 -11.94274 -11.84502 -11.78585 -11.43469 -11.41450 -11.38741 -10.89027 -10.69196 -10.20877 -10.01328 -9.67216 -8.97132 -7.94853 -5.29117 1.45252 1.48029 1.54643 1.56948 1.97674 2.41499 2.61634 2.72809 2.90449 3.24849 3.45383 3.51046 3.71538 3.82912 3.84392 3.91909 3.95710 4.05373 4.13831 4.14667 4.19564 4.21048 4.31133 4.36401 4.41276 4.50710 4.51599 4.57991 4.66681 4.77009 4.77929 4.84198 4.86248 4.87326 4.91876 4.94222 4.99110 5.03210 5.05661 5.15728 5.20340 5.24216 5.26732 5.36189 5.48007 5.55466 5.86874 6.38862 6.46694 6.47045 6.87462 7.26521 7.56344 8.52072 9.23153 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.001803 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.793964 B =15529.979961 C =15748.710735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.364 6.364 4 C 0.037 3.963 5 H 0.149 0.851 6 C -0.144 4.144 7 C -0.206 4.206 8 H 0.160 0.840 9 C 0.533 3.467 10 O -0.565 6.565 11 N -0.613 5.613 12 C 0.112 3.888 13 C -0.149 4.149 14 C 0.083 3.917 15 O -0.384 6.384 16 C 0.072 3.928 17 C 0.145 3.855 18 N -0.638 5.638 19 C -0.237 4.237 20 H 0.090 0.910 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.262 1.262 27 C 0.121 3.879 28 C -0.123 4.123 29 C 0.120 3.880 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.010 0.990 44 H 0.041 0.959 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -24.103 19.307 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.282 6.282 4 C -0.021 4.021 5 H 0.166 0.834 6 C -0.181 4.181 7 C -0.227 4.227 8 H 0.177 0.823 9 C 0.323 3.677 10 O -0.443 6.443 11 N -0.347 5.347 12 C -0.010 4.010 13 C -0.188 4.188 14 C 0.025 3.975 15 O -0.302 6.302 16 C 0.014 3.986 17 C 0.019 3.981 18 N -0.366 5.366 19 C -0.365 4.365 20 H 0.108 0.892 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.810 3.190 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.186 1.186 27 C -0.004 4.004 28 C -0.161 4.161 29 C -0.003 4.003 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.204 -23.858 19.077 30.715 hybrid contribution 0.089 1.290 -0.999 1.634 sum -3.115 -22.568 18.079 29.083 Atomic orbital electron populations 1.21736 0.93930 1.03053 1.01955 1.22705 0.95788 0.83079 1.01019 1.88129 1.19001 1.27307 1.93803 1.22979 0.82817 0.94341 1.02008 0.83366 1.23507 1.04006 1.01119 0.89515 1.22916 1.01777 0.99592 0.98421 0.82286 1.20207 0.88516 0.81362 0.77622 1.90729 1.17719 1.76255 1.59599 1.48257 1.08266 1.22002 1.56134 1.22035 0.78831 1.04291 0.95812 1.22481 1.00888 0.99157 0.96239 1.22244 0.94390 0.97801 0.83044 1.87943 1.55235 1.60076 1.26987 1.24406 0.88617 0.87708 0.97908 1.22625 0.88275 0.94900 0.92266 1.46051 1.24477 1.02358 1.63755 1.19445 0.99034 0.88436 1.29606 0.89244 1.25747 0.98908 0.99374 1.02036 1.70039 1.25159 1.16988 1.48020 0.85009 0.78462 0.77884 0.77683 1.21668 1.21934 1.18628 1.22854 0.98084 0.84952 0.94525 1.21897 0.95310 1.02286 0.96626 1.21469 0.94521 0.92316 0.91969 0.92682 0.93787 0.88810 0.92707 0.91411 0.89781 0.83426 0.89722 0.86392 0.91230 0.89096 0.91721 0.88083 0.97189 0.94033 0.94144 0.91134 0.94124 0.91953 0.90492 0.90175 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.75 6.53 71.98 0.47 1.22 16 3 O -0.36 -8.02 8.48 -127.82 -1.08 -9.10 16 4 C 0.04 0.53 6.40 30.59 0.20 0.73 16 5 H 0.15 1.05 7.93 -2.39 -0.02 1.03 16 6 C -0.14 -1.63 10.19 30.62 0.31 -1.32 16 7 C -0.21 -2.98 5.12 -11.52 -0.06 -3.04 16 8 H 0.16 1.26 6.57 -2.39 -0.02 1.24 16 9 C 0.53 12.57 7.48 87.65 0.66 13.22 16 10 O -0.56 -18.50 14.34 18.11 0.26 -18.24 16 11 N -0.61 -12.58 2.97 -817.98 -2.43 -15.00 16 12 C 0.11 1.59 6.37 86.51 0.55 2.14 16 13 C -0.15 -2.77 5.71 30.82 0.18 -2.59 16 14 C 0.08 2.10 2.45 30.62 0.07 2.17 16 15 O -0.38 -12.93 10.01 -148.98 -1.49 -14.42 16 16 C 0.07 2.71 4.29 31.25 0.13 2.85 16 17 C 0.15 7.21 7.27 86.44 0.63 7.84 16 18 N -0.64 -33.58 3.70 -720.79 -2.67 -36.25 16 19 C -0.24 -13.46 10.70 84.03 0.90 -12.57 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.95 -58.54 11.51 21.65 0.25 -58.29 16 23 Si 0.98 45.79 29.56 68.60 2.03 47.82 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 C 0.12 4.96 8.77 86.49 0.76 5.72 16 28 C -0.12 -3.04 5.73 30.69 0.18 -2.86 16 29 C 0.12 2.72 6.43 86.38 0.56 3.28 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.15 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 0.99 5.51 -2.38 -0.01 0.97 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.62 7.74 -2.39 -0.02 1.60 16 42 H 0.10 3.38 7.80 -2.39 -0.02 3.36 16 43 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.04 2.25 7.37 -2.39 -0.02 2.23 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 47 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.08 2.09 7.01 -2.39 -0.02 2.07 16 51 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.46 407.45 2.50 -76.96 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.90 Total: 14.68 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 6.74 Total: 11.85 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.84 Total: -109.54 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -2.31 Total: -41.77 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -79.46 2.50 -76.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093510432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.158 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds