Wall clock time and date at job start Tue Mar 31 2020 21:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20764 * 119.99831 * 2 1 4 4 C 1.50702 * 120.00472 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47531 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 O 1.42898 * 109.41880 * 178.67207 * 12 11 10 14 14 C 1.42900 * 114.00252 * 270.13180 * 13 12 11 15 15 C 1.53950 * 113.73977 * 248.73952 * 14 13 12 16 16 N 1.47811 * 86.03526 * 222.08655 * 15 14 13 17 17 C 1.36942 * 134.45663 * 204.64839 * 16 15 14 18 18 H 1.07993 * 120.00147 * 179.86346 * 17 16 15 19 19 C 1.38820 * 119.99732 * 359.86423 * 17 16 15 20 20 N 1.31621 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46866 * 59.99949 * 21 19 17 23 23 H 1.48499 * 109.46541 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47196 * 299.99723 * 21 19 17 25 25 C 1.47577 * 91.05533 * 24.54887 * 16 15 14 26 26 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 27 27 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 28 28 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46968 * 299.99327 * 1 2 3 30 30 H 1.09003 * 109.47738 * 59.99472 * 1 2 3 31 31 H 1.09005 * 109.46790 * 59.99011 * 4 2 1 32 32 H 1.09001 * 109.46888 * 299.99837 * 4 2 1 33 33 H 1.08996 * 109.46993 * 60.00050 * 5 4 2 34 34 H 1.09001 * 109.47240 * 300.00036 * 5 4 2 35 35 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 36 36 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 37 37 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 38 38 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 39 39 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 40 40 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 41 41 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 42 42 H 1.08994 * 112.94642 * 20.33216 * 14 13 12 43 43 H 1.09005 * 113.77098 * 336.34714 * 15 14 13 44 44 H 1.08995 * 113.77070 * 107.74480 * 15 14 13 45 45 H 0.96993 * 119.99596 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.77416 * 221.15573 * 25 16 15 47 47 H 1.09003 * 113.76723 * 89.75273 * 25 16 15 48 48 H 1.08994 * 109.50232 * 301.42239 * 26 12 11 49 49 H 1.09000 * 109.49784 * 181.32304 * 26 12 11 50 50 H 1.08994 * 109.58580 * 353.38021 * 27 9 7 51 51 H 1.09006 * 109.57831 * 113.65514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4156 -0.9316 -0.0004 9 7 6.8873 -3.0994 -0.0014 10 6 8.3346 -2.8469 -0.0018 11 6 8.9713 -3.6079 1.1653 12 6 8.5888 -5.0897 1.0680 13 8 9.2051 -5.8107 2.1368 14 6 10.5018 -6.3218 1.8214 15 6 10.5543 -7.8568 1.7169 16 7 11.8306 -7.7610 2.4564 17 6 12.9443 -8.5519 2.5538 18 1 13.7693 -8.2478 3.1808 19 6 13.0126 -9.7445 1.8467 20 7 12.0069 -10.1154 1.0830 21 14 14.5316 -10.8237 1.9802 22 1 14.7248 -11.2334 3.3944 23 1 14.3561 -12.0318 1.1348 24 1 15.7208 -10.0639 1.5180 25 6 11.4240 -6.4704 3.0452 26 6 7.0684 -5.2351 1.1650 27 6 6.4127 -4.4900 -0.0026 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.9971 -1.8763 -0.8908 32 1 1.9972 -1.8770 0.8892 33 1 4.0284 -0.4541 0.8889 34 1 4.0278 -0.4537 -0.8911 35 1 4.2661 -2.9222 -0.8909 36 1 4.2667 -2.9219 0.8891 37 1 8.7655 -3.1921 -0.9417 38 1 8.5192 -1.7790 0.1142 39 1 10.0554 -3.5048 1.1188 40 1 8.6067 -3.1997 2.1079 41 1 8.9318 -5.4907 0.1142 42 1 10.9679 -5.8084 0.9805 43 1 9.7628 -8.3623 2.2703 44 1 10.6630 -8.2242 0.6965 45 1 12.0545 -10.9489 0.5892 46 1 12.2256 -5.7328 3.0833 47 1 10.8884 -6.5676 3.9896 48 1 6.7218 -4.8118 2.1076 49 1 6.8003 -6.2907 1.1192 50 1 5.3293 -4.5065 0.1154 51 1 6.6851 -4.9681 -0.9436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105687108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:29 Heat of formation + Delta-G solvation = -74.235007 kcal Electronic energy + Delta-G solvation = -28963.211899 eV Core-core repulsion = 24864.342047 eV Total energy + Delta-G solvation = -4098.869852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.52208 -39.81103 -38.76024 -37.39388 -35.46349 -34.72044 -32.30429 -31.78834 -31.31911 -30.97601 -28.35687 -27.44641 -25.01259 -24.75990 -23.77033 -22.82393 -22.53718 -20.81069 -20.03384 -19.51237 -18.97272 -17.53681 -16.86403 -16.56869 -16.47835 -16.29295 -15.72197 -15.62423 -15.25862 -15.02128 -14.57642 -14.50511 -14.43491 -13.81504 -13.78803 -13.66862 -13.26411 -13.08142 -12.85375 -12.67671 -12.60980 -12.29679 -12.22784 -11.98448 -11.90740 -11.76817 -11.71905 -11.39110 -11.19406 -11.16218 -11.15823 -10.88409 -10.70395 -10.50565 -10.27423 -10.12173 -10.01032 -9.86277 -9.55361 -8.89249 -8.80982 -8.73438 -6.91381 -5.79283 -3.12033 1.55710 2.42552 2.72848 3.38535 3.42228 3.43677 3.59264 3.92218 4.16638 4.45974 4.47084 4.54184 4.56599 4.61088 4.75001 4.82449 4.84954 4.89514 5.01624 5.05310 5.09352 5.11122 5.18059 5.20172 5.20605 5.32535 5.36341 5.43205 5.50636 5.53109 5.60344 5.67143 5.72034 5.73169 5.77721 5.89358 5.97873 6.04389 6.19714 6.34002 6.41235 6.62080 6.64280 7.09032 7.10930 7.16905 7.21541 7.50659 7.85992 7.95910 7.97121 9.02009 9.67904 10.56813 11.37987 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.502455 B =17272.173491 C =17586.990215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.455 6.455 4 C -0.174 4.174 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.514 3.486 8 O -0.541 6.541 9 N -0.614 5.614 10 C 0.113 3.887 11 C -0.155 4.155 12 C 0.091 3.909 13 O -0.373 6.373 14 C 0.035 3.965 15 C 0.149 3.851 16 N -0.608 5.608 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.121 3.879 26 C -0.132 4.132 27 C 0.109 3.891 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.254 0.746 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 14.993 -4.940 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.329 6.329 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.302 3.698 8 O -0.418 6.418 9 N -0.348 5.348 10 C -0.010 4.010 11 C -0.194 4.194 12 C 0.033 3.967 13 O -0.291 6.291 14 C -0.024 4.024 15 C 0.024 3.976 16 N -0.337 5.337 17 C -0.350 4.350 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.005 4.005 26 C -0.170 4.170 27 C -0.014 4.014 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.643 15.854 -4.840 28.062 hybrid contribution 0.862 -1.014 -0.039 1.331 sum -21.781 14.840 -4.879 26.804 Atomic orbital electron populations 1.22280 0.94559 1.04614 1.04785 1.24655 0.91909 0.90413 0.70384 1.90458 1.71889 1.35252 1.35258 1.22211 0.96514 0.97624 1.04779 1.21168 0.91670 0.95895 1.04859 1.21725 0.91823 1.00077 1.04415 1.20683 0.88726 0.84665 0.75703 1.90713 1.80184 1.21142 1.49741 1.48212 1.06788 1.06382 1.73404 1.21587 0.79032 1.01969 0.98375 1.22519 1.01453 0.96308 0.99088 1.22009 0.92648 0.90662 0.91424 1.87947 1.32221 1.71323 1.37621 1.25029 0.82003 0.96764 0.98588 1.22747 0.87204 0.89508 0.98169 1.45671 1.14755 1.21015 1.52233 1.18956 0.92362 0.99934 1.23725 0.90130 1.24802 0.98129 0.97806 0.99677 1.69815 1.30718 1.23783 1.32546 0.86168 0.82056 0.79879 0.77473 1.21115 1.21511 1.21024 1.22729 0.93904 0.89079 0.94812 1.21984 0.94634 1.01608 0.98794 1.21806 0.99551 0.80859 0.99161 0.89977 0.89094 0.89108 0.88203 0.88158 0.90587 0.90624 0.88742 0.88632 0.91353 0.88836 0.90268 0.90865 0.92031 0.90224 0.94854 0.90960 0.93561 0.93635 0.94030 0.90746 0.89527 0.89245 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.66 10.33 36.00 0.37 -0.29 16 2 C 0.35 2.28 7.27 -29.04 -0.21 2.07 16 3 O -0.46 -5.16 16.72 6.00 0.10 -5.06 16 4 C -0.17 -0.77 5.55 -27.88 -0.15 -0.92 16 5 C -0.10 -0.77 3.79 -26.73 -0.10 -0.87 16 6 C -0.14 -0.92 4.05 -27.88 -0.11 -1.04 16 7 C 0.51 5.56 7.70 -10.99 -0.08 5.48 16 8 O -0.54 -8.11 15.39 5.56 0.09 -8.03 16 9 N -0.61 -6.08 2.97 -172.74 -0.51 -6.59 16 10 C 0.11 1.22 6.42 -3.71 -0.02 1.19 16 11 C -0.16 -1.82 5.72 -26.45 -0.15 -1.98 16 12 C 0.09 1.16 2.45 -26.53 -0.07 1.10 16 13 O -0.37 -6.30 10.01 -35.23 -0.35 -6.65 16 14 C 0.03 0.66 4.29 -25.80 -0.11 0.55 16 15 C 0.15 3.56 7.36 -2.84 -0.02 3.54 16 16 N -0.61 -15.91 3.70 -177.97 -0.66 -16.57 16 17 C -0.22 -6.30 10.70 -15.05 -0.16 -6.46 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.27 11.39 55.49 0.63 -26.63 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.12 2.57 8.77 -2.97 -0.03 2.55 16 26 C -0.13 -1.31 5.73 -26.59 -0.15 -1.47 16 27 C 0.11 0.82 6.34 -3.68 -0.02 0.80 16 28 H 0.08 0.08 8.00 -51.93 -0.42 -0.33 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 34 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.09 0.41 7.94 -51.93 -0.41 0.00 16 36 H 0.10 0.45 7.69 -51.93 -0.40 0.05 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 42 H 0.08 1.45 7.80 -51.93 -0.41 1.05 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.09 0.43 5.93 -51.93 -0.31 0.12 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -36.26 410.44 -9.63 -45.89 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.96 Total: -3.53 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.12 Total: 3.95 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.54 Total: -49.80 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.17 Total: -19.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.26 -9.63 -45.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105687108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.345 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds