Wall clock time and date at job start Tue Mar 31 2020 21:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20764 * 119.99831 * 2 1 4 4 C 1.50702 * 120.00472 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47531 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 O 1.42898 * 109.41880 * 178.67207 * 12 11 10 14 14 C 1.42900 * 114.00252 * 270.13180 * 13 12 11 15 15 C 1.53950 * 113.73977 * 248.73952 * 14 13 12 16 16 N 1.47811 * 86.03526 * 222.08655 * 15 14 13 17 17 C 1.36942 * 134.45663 * 204.64839 * 16 15 14 18 18 H 1.07993 * 120.00147 * 179.86346 * 17 16 15 19 19 C 1.38820 * 119.99732 * 359.86423 * 17 16 15 20 20 N 1.31621 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46866 * 59.99949 * 21 19 17 23 23 H 1.48499 * 109.46541 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47196 * 299.99723 * 21 19 17 25 25 C 1.47577 * 91.05533 * 24.54887 * 16 15 14 26 26 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 27 27 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 28 28 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46968 * 299.99327 * 1 2 3 30 30 H 1.09003 * 109.47738 * 59.99472 * 1 2 3 31 31 H 1.09005 * 109.46790 * 59.99011 * 4 2 1 32 32 H 1.09001 * 109.46888 * 299.99837 * 4 2 1 33 33 H 1.08996 * 109.46993 * 60.00050 * 5 4 2 34 34 H 1.09001 * 109.47240 * 300.00036 * 5 4 2 35 35 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 36 36 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 37 37 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 38 38 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 39 39 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 40 40 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 41 41 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 42 42 H 1.08994 * 112.94642 * 20.33216 * 14 13 12 43 43 H 1.09005 * 113.77098 * 336.34714 * 15 14 13 44 44 H 1.08995 * 113.77070 * 107.74480 * 15 14 13 45 45 H 0.96993 * 119.99596 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.77416 * 221.15573 * 25 16 15 47 47 H 1.09003 * 113.76723 * 89.75273 * 25 16 15 48 48 H 1.08994 * 109.50232 * 301.42239 * 26 12 11 49 49 H 1.09000 * 109.49784 * 181.32304 * 26 12 11 50 50 H 1.08994 * 109.58580 * 353.38021 * 27 9 7 51 51 H 1.09006 * 109.57831 * 113.65514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4156 -0.9316 -0.0004 9 7 6.8873 -3.0994 -0.0014 10 6 8.3346 -2.8469 -0.0018 11 6 8.9713 -3.6079 1.1653 12 6 8.5888 -5.0897 1.0680 13 8 9.2051 -5.8107 2.1368 14 6 10.5018 -6.3218 1.8214 15 6 10.5543 -7.8568 1.7169 16 7 11.8306 -7.7610 2.4564 17 6 12.9443 -8.5519 2.5538 18 1 13.7693 -8.2478 3.1808 19 6 13.0126 -9.7445 1.8467 20 7 12.0069 -10.1154 1.0830 21 14 14.5316 -10.8237 1.9802 22 1 14.7248 -11.2334 3.3944 23 1 14.3561 -12.0318 1.1348 24 1 15.7208 -10.0639 1.5180 25 6 11.4240 -6.4704 3.0452 26 6 7.0684 -5.2351 1.1650 27 6 6.4127 -4.4900 -0.0026 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.9971 -1.8763 -0.8908 32 1 1.9972 -1.8770 0.8892 33 1 4.0284 -0.4541 0.8889 34 1 4.0278 -0.4537 -0.8911 35 1 4.2661 -2.9222 -0.8909 36 1 4.2667 -2.9219 0.8891 37 1 8.7655 -3.1921 -0.9417 38 1 8.5192 -1.7790 0.1142 39 1 10.0554 -3.5048 1.1188 40 1 8.6067 -3.1997 2.1079 41 1 8.9318 -5.4907 0.1142 42 1 10.9679 -5.8084 0.9805 43 1 9.7628 -8.3623 2.2703 44 1 10.6630 -8.2242 0.6965 45 1 12.0545 -10.9489 0.5892 46 1 12.2256 -5.7328 3.0833 47 1 10.8884 -6.5676 3.9896 48 1 6.7218 -4.8118 2.1076 49 1 6.8003 -6.2907 1.1192 50 1 5.3293 -4.5065 0.1154 51 1 6.6851 -4.9681 -0.9436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105687108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:28 Heat of formation + Delta-G solvation = -98.094022 kcal Electronic energy + Delta-G solvation = -28964.246504 eV Core-core repulsion = 24864.342047 eV Total energy + Delta-G solvation = -4099.904456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35129 -40.44241 -40.15091 -38.63551 -36.77207 -35.32173 -34.15732 -32.85293 -32.20527 -31.46031 -29.45329 -28.79432 -26.61655 -25.93369 -24.87142 -24.29323 -23.24154 -21.69052 -21.20241 -20.50555 -19.81813 -18.82038 -18.38824 -17.73165 -17.13650 -17.10377 -16.97472 -16.34237 -16.28098 -15.97449 -15.80151 -15.65167 -15.37099 -15.16615 -14.81068 -14.69113 -14.41099 -14.09489 -13.78570 -13.44013 -13.34672 -13.20458 -13.16841 -13.07082 -12.87678 -12.81337 -12.69837 -12.69681 -12.66373 -12.39721 -12.24512 -12.19578 -11.96611 -11.74105 -11.69952 -11.47061 -11.40463 -10.88327 -10.86760 -10.49247 -10.21389 -9.71996 -8.97414 -7.92791 -5.27762 1.09461 1.46054 1.49825 1.55928 1.63153 1.99015 2.42447 2.74111 3.20283 3.26983 3.44473 3.53705 3.73974 3.78745 3.94204 4.03283 4.08032 4.10097 4.14252 4.14733 4.18339 4.32557 4.42284 4.47814 4.55185 4.58704 4.65277 4.71597 4.74911 4.77427 4.81249 4.81331 4.83444 4.89356 4.91651 4.94297 5.02502 5.17811 5.19042 5.20769 5.23979 5.27216 5.37679 5.38553 5.48326 5.54297 5.88479 6.41302 6.45922 6.67732 6.88988 7.17953 7.56935 8.52047 9.24169 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.502455 B =17272.173491 C =17586.990215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.347 3.653 3 O -0.519 6.519 4 C -0.167 4.167 5 C -0.097 4.097 6 C -0.131 4.131 7 C 0.504 3.496 8 O -0.595 6.595 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.146 4.146 12 C 0.081 3.919 13 O -0.381 6.381 14 C 0.071 3.929 15 C 0.146 3.854 16 N -0.638 5.638 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.064 4.064 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.118 3.882 26 C -0.128 4.128 27 C 0.111 3.889 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.016 0.984 44 H 0.047 0.953 45 H 0.251 0.749 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.128 0.872 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.097 13.864 -5.287 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.227 3.773 3 O -0.397 6.397 4 C -0.204 4.204 5 C -0.135 4.135 6 C -0.170 4.170 7 C 0.295 3.705 8 O -0.476 6.476 9 N -0.346 5.346 10 C -0.008 4.008 11 C -0.184 4.184 12 C 0.023 3.977 13 O -0.299 6.299 14 C 0.012 3.988 15 C 0.021 3.979 16 N -0.367 5.367 17 C -0.368 4.368 18 H 0.103 0.897 19 C -0.258 4.258 20 N -0.601 5.601 21 Si 0.810 3.190 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.200 1.200 25 C -0.007 4.007 26 C -0.166 4.166 27 C -0.010 4.010 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.146 0.854 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.481 14.713 -5.171 29.026 hybrid contribution 1.375 -0.616 0.101 1.510 sum -23.106 14.097 -5.070 27.538 Atomic orbital electron populations 1.22305 0.91891 1.06790 1.04817 1.25437 0.93631 0.90327 0.67863 1.90453 1.73311 1.37447 1.38502 1.22275 0.93280 0.97038 1.07770 1.21075 0.94684 0.96046 1.01698 1.21795 0.88019 0.99791 1.07397 1.21553 0.90615 0.83911 0.74429 1.90696 1.81271 1.23400 1.52184 1.48340 1.06191 1.07443 1.72649 1.21470 0.80202 1.00770 0.98387 1.22399 1.01322 0.95719 0.98987 1.22356 0.94486 0.90490 0.90319 1.87930 1.30992 1.71623 1.39355 1.24366 0.83021 0.93623 0.97768 1.22670 0.86198 0.92858 0.96197 1.46039 1.14879 1.22440 1.53311 1.19383 0.93411 1.00544 1.23500 0.89663 1.25678 1.01217 0.99225 0.99644 1.70003 1.32654 1.23961 1.33476 0.85095 0.78655 0.77743 0.77478 1.20409 1.21774 1.19960 1.22868 0.94857 0.87439 0.95498 1.21985 0.92262 1.02426 0.99907 1.22027 1.01526 0.78858 0.98615 0.86726 0.89054 0.88946 0.84778 0.85019 0.94100 0.93790 0.85170 0.85641 0.90191 0.90599 0.90623 0.91962 0.91731 0.88907 0.96565 0.93484 0.94059 0.91874 0.93780 0.91054 0.88965 0.85387 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.85 10.33 71.23 0.74 -0.11 16 2 C 0.35 4.16 7.27 29.10 0.21 4.38 16 3 O -0.52 -12.49 16.72 -1.46 -0.02 -12.51 16 4 C -0.17 -0.96 5.55 29.85 0.17 -0.80 16 5 C -0.10 -1.45 3.79 30.60 0.12 -1.33 16 6 C -0.13 -1.30 4.05 29.85 0.12 -1.18 16 7 C 0.50 10.33 7.70 87.66 0.67 11.01 16 8 O -0.59 -18.52 15.39 -3.03 -0.05 -18.57 16 9 N -0.61 -10.93 2.97 -818.81 -2.43 -13.37 16 10 C 0.11 2.39 6.42 86.36 0.55 2.95 16 11 C -0.15 -3.30 5.72 30.78 0.18 -3.13 16 12 C 0.08 1.94 2.45 30.72 0.08 2.02 16 13 O -0.38 -12.41 10.01 -148.98 -1.49 -13.90 16 14 C 0.07 2.69 4.29 31.26 0.13 2.82 16 15 C 0.15 7.10 7.36 86.44 0.64 7.74 16 16 N -0.64 -33.57 3.70 -720.79 -2.67 -36.24 16 17 C -0.24 -13.68 10.70 84.03 0.90 -12.78 16 18 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 19 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.95 -57.29 11.39 21.65 0.25 -57.05 16 21 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.12 4.96 8.77 86.49 0.76 5.72 16 26 C -0.13 -2.19 5.73 30.69 0.18 -2.02 16 27 C 0.11 1.26 6.34 86.38 0.55 1.80 16 28 H 0.11 -0.26 8.00 -2.39 -0.02 -0.28 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.13 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.04 0.88 8.06 -2.39 -0.02 0.86 16 34 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 35 H 0.13 0.43 7.94 -2.39 -0.02 0.41 16 36 H 0.13 0.56 7.69 -2.39 -0.02 0.55 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.88 7.00 -2.39 -0.02 1.86 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.54 7.74 -2.39 -0.02 1.52 16 42 H 0.09 3.28 7.80 -2.39 -0.02 3.26 16 43 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 2.49 7.17 -2.39 -0.02 2.47 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 50 H 0.13 0.51 5.93 -2.39 -0.01 0.49 16 51 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -84.68 410.44 2.95 -81.72 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.89 Total: 8.56 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.45 Total: 13.87 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.86 Total: -106.66 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.56 Total: -44.98 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -84.68 2.95 -81.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105687108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.371 kcal (2) G-P(sol) polarization free energy of solvation -84.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds