Wall clock time and date at job start Tue Mar 31 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47152 * 2 1 4 4 C 1.42892 * 114.00241 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46979 * 30.00152 * 4 3 2 6 6 C 1.50700 * 109.47325 * 270.00247 * 4 3 2 7 7 O 1.21280 * 119.99653 * 354.99653 * 6 4 3 8 8 N 1.34772 * 120.00080 * 175.00048 * 6 4 3 9 9 C 1.46501 * 119.99826 * 180.02562 * 8 6 4 10 10 H 1.09002 * 115.51691 * 350.57774 * 9 8 6 11 11 C 1.53008 * 117.44217 * 205.16487 * 9 8 6 12 12 H 1.09003 * 119.53793 * 4.12032 * 11 9 8 13 13 C 1.54384 * 118.12316 * 159.20903 * 11 9 8 14 14 N 1.48143 * 104.61415 * 87.19217 * 13 11 9 15 15 C 1.36947 * 127.83630 * 140.41749 * 14 13 11 16 16 H 1.07996 * 119.99440 * 195.57411 * 15 14 13 17 17 C 1.38811 * 120.00127 * 15.56967 * 15 14 13 18 18 N 1.31622 * 119.99718 * 9.10291 * 17 15 14 19 19 Si 1.86789 * 120.00196 * 189.10072 * 17 15 14 20 20 H 1.48494 * 109.47480 * 90.00040 * 19 17 15 21 21 H 1.48504 * 109.47180 * 210.00276 * 19 17 15 22 22 H 1.48501 * 109.47212 * 329.99737 * 19 17 15 23 23 C 1.48141 * 104.32812 * 320.41431 * 14 13 11 24 24 C 1.53001 * 117.44348 * 135.99883 * 9 8 6 25 25 H 1.09003 * 119.53743 * 355.87734 * 24 9 8 26 26 C 1.52997 * 109.47176 * 149.99960 * 4 3 2 27 27 C 1.53181 * 109.54495 * 59.82509 * 26 4 3 28 28 C 1.53107 * 109.15689 * 183.24179 * 27 26 4 29 29 O 1.42898 * 109.48767 * 57.47329 * 28 27 26 30 30 C 1.42900 * 114.09790 * 298.88478 * 29 28 27 31 31 C 1.53097 * 109.41486 * 61.16455 * 30 29 28 32 32 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46942 * 299.99798 * 1 2 3 34 34 H 1.08994 * 109.47488 * 59.99875 * 1 2 3 35 35 H 1.08994 * 109.47488 * 120.00125 * 2 1 3 36 36 H 1.09004 * 109.46942 * 240.00202 * 2 1 3 37 37 H 0.97002 * 120.00247 * 359.97438 * 8 6 4 38 38 H 1.08999 * 110.40980 * 205.97882 * 13 11 9 39 39 H 1.08997 * 110.40792 * 328.29439 * 13 11 9 40 40 H 0.97006 * 119.99726 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.41018 * 158.36711 * 23 14 13 42 42 H 1.09003 * 110.40786 * 280.80431 * 23 14 13 43 43 H 1.09006 * 109.54831 * 180.02562 * 26 4 3 44 44 H 1.09002 * 109.51805 * 303.05799 * 27 26 4 45 45 H 1.09001 * 109.52106 * 63.24514 * 27 26 4 46 46 H 1.09001 * 109.40532 * 297.48837 * 28 27 26 47 47 H 1.08998 * 109.47845 * 177.50428 * 28 27 26 48 48 H 1.08993 * 109.48534 * 301.17408 * 30 29 28 49 49 H 1.09006 * 109.47943 * 181.13802 * 30 29 28 50 50 H 1.08993 * 109.52338 * 182.48654 * 31 30 29 51 51 H 1.08999 * 109.52691 * 62.29369 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8630 0.6017 -0.5148 6 6 3.9322 1.4996 1.4200 7 8 3.1434 1.5288 2.3408 8 7 5.2570 1.5025 1.6672 9 6 5.7444 1.5402 3.0482 10 1 4.9860 1.7253 3.8089 11 6 7.1398 2.1204 3.2879 12 1 7.6962 2.5449 2.4522 13 6 7.4854 2.6224 4.7064 14 7 7.9877 1.4226 5.4155 15 6 9.0324 1.3440 6.2974 16 1 9.4543 0.3825 6.5502 17 6 9.5491 2.5000 6.8662 18 7 8.9278 3.6487 6.7019 19 14 11.1259 2.4254 7.8647 20 1 12.2900 2.6432 6.9688 21 1 11.1009 3.4808 8.9091 22 1 11.2406 1.0930 8.5102 23 6 7.1034 0.3272 4.9543 24 6 6.8972 0.6034 3.4150 25 1 7.2727 -0.1023 2.6740 26 6 3.8402 2.7459 -0.7218 27 6 3.2299 3.9532 -0.0031 28 6 3.5776 5.2274 -0.7776 29 8 3.0996 5.1149 -2.1195 30 6 3.6732 4.0319 -2.8544 31 6 3.3275 2.7095 -2.1649 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 5.8879 1.4788 0.9307 38 1 8.2593 3.3885 4.6604 39 1 6.5947 3.0122 5.1991 40 1 9.2891 4.4566 7.0990 41 1 7.5892 -0.6384 5.0953 42 1 6.1526 0.3567 5.4865 43 1 4.9268 2.8330 -0.7234 44 1 2.1467 3.8404 0.0428 45 1 3.6336 4.0178 1.0073 46 1 4.6592 5.3617 -0.7869 47 1 3.1088 6.0851 -0.2953 48 1 4.7561 4.1506 -2.8911 49 1 3.2732 4.0284 -3.8684 50 1 3.8009 1.8856 -2.6988 51 1 2.2464 2.5708 -2.1639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114633110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:17 Heat of formation + Delta-G solvation = -96.685095 kcal Electronic energy + Delta-G solvation = -30452.458338 eV Core-core repulsion = 26352.614977 eV Total energy + Delta-G solvation = -4099.843360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63706 -40.42502 -39.64802 -38.41579 -36.12030 -35.38364 -34.21013 -32.21736 -32.00429 -31.98229 -29.08499 -28.78271 -27.47210 -24.97997 -24.53206 -23.73884 -23.36463 -22.01965 -21.63020 -20.93315 -20.89280 -18.89439 -18.51760 -18.12893 -17.32312 -17.27537 -16.82701 -16.71919 -16.27024 -16.02634 -15.68147 -15.54729 -15.45338 -15.08847 -14.93684 -14.70560 -14.65046 -14.23052 -13.79974 -13.39020 -13.32132 -13.25377 -13.18679 -12.94927 -12.89918 -12.85072 -12.71687 -12.26123 -12.19459 -12.11748 -12.06127 -12.00329 -11.89775 -11.75877 -11.69901 -11.32105 -11.17426 -10.90356 -10.74257 -10.53445 -10.23546 -9.72952 -8.94988 -7.93471 -5.30863 1.43992 1.46403 1.48226 1.57341 1.83719 2.47105 2.65337 2.84302 3.00627 3.26337 3.43849 3.56429 3.60333 3.74476 3.81538 3.93586 3.93877 4.04492 4.05606 4.13396 4.19262 4.28540 4.30025 4.36479 4.44610 4.47885 4.50304 4.60360 4.69537 4.73035 4.79662 4.82353 4.83962 4.86819 4.92692 4.95470 5.03302 5.14988 5.19335 5.25078 5.25601 5.39093 5.42878 5.43287 5.51559 5.62796 6.05564 6.14540 6.30921 6.51442 6.98230 7.18788 7.65128 8.43482 9.20351 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002506 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.494376 B =11171.982045 C =12375.576076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.089 3.911 5 H 0.123 0.877 6 C 0.491 3.509 7 O -0.573 6.573 8 N -0.679 5.679 9 C 0.112 3.888 10 H 0.098 0.902 11 C -0.177 4.177 12 H 0.129 0.871 13 C 0.189 3.811 14 N -0.616 5.616 15 C -0.242 4.242 16 H 0.083 0.917 17 C -0.063 4.063 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.148 3.852 24 C -0.163 4.163 25 H 0.144 0.856 26 C -0.077 4.077 27 C -0.146 4.146 28 C 0.064 3.936 29 O -0.405 6.405 30 C 0.054 3.946 31 C -0.139 4.139 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.060 0.940 39 H -0.008 1.008 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.109 0.891 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.108 0.892 50 H 0.103 0.897 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 -5.737 -24.868 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.287 6.287 4 C 0.027 3.973 5 H 0.141 0.859 6 C 0.278 3.722 7 O -0.451 6.451 8 N -0.331 5.331 9 C 0.005 3.995 10 H 0.116 0.884 11 C -0.198 4.198 12 H 0.146 0.854 13 C 0.063 3.937 14 N -0.340 5.340 15 C -0.370 4.370 16 H 0.101 0.899 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.192 1.192 23 C 0.022 3.978 24 C -0.184 4.184 25 H 0.162 0.838 26 C -0.096 4.096 27 C -0.184 4.184 28 C -0.013 4.013 29 O -0.324 6.324 30 C -0.023 4.023 31 C -0.177 4.177 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.126 0.874 50 H 0.122 0.878 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.577 -5.322 -24.135 27.292 hybrid contribution 1.168 0.012 1.288 1.739 sum -10.408 -5.310 -22.847 25.662 Atomic orbital electron populations 1.21717 0.92926 1.03292 1.02457 1.22755 0.96598 0.82860 1.00535 1.88007 1.18652 1.27863 1.94132 1.22143 0.83578 1.01816 0.89761 0.85916 1.22079 0.81954 0.74886 0.93248 1.90715 1.56329 1.50167 1.47842 1.45237 1.07053 1.73923 1.06909 1.21371 0.90274 1.02701 0.85142 0.88423 1.24280 0.98043 0.97718 0.99737 0.85366 1.20789 0.95614 0.90274 0.87049 1.45418 1.34061 1.04956 1.49574 1.19405 1.06393 0.93949 1.17299 0.89879 1.25781 1.03023 0.95659 1.01172 1.70106 1.40617 0.99097 1.49750 0.85019 0.78903 0.77361 0.77669 1.20867 1.22236 1.19183 1.21843 0.92803 0.92337 0.90853 1.24994 1.01876 0.93740 0.97812 0.83849 1.21393 1.01424 0.91123 0.95659 1.22101 1.01732 0.95846 0.98717 1.22567 0.99352 0.97148 0.82194 1.87913 1.68313 1.51375 1.24780 1.22806 0.98586 0.85121 0.95748 1.22161 1.02698 0.99394 0.93437 0.89136 0.93741 0.91260 0.94823 0.90370 0.74432 0.92201 0.99043 0.94072 0.91884 0.96445 0.87251 0.92098 0.92916 0.91865 0.89017 0.91699 0.87389 0.87846 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.28 71.98 0.74 -1.55 16 2 C 0.05 0.85 6.46 71.98 0.46 1.31 16 3 O -0.37 -8.05 8.08 -129.99 -1.05 -9.10 16 4 C 0.09 1.56 2.26 29.85 0.07 1.63 16 5 H 0.12 1.27 7.79 -2.39 -0.02 1.25 16 6 C 0.49 12.82 5.95 87.66 0.52 13.34 16 7 O -0.57 -21.32 16.07 15.96 0.26 -21.07 16 8 N -0.68 -15.70 5.52 -442.52 -2.44 -18.14 16 9 C 0.11 3.61 5.93 44.99 0.27 3.88 16 10 H 0.10 3.90 7.40 -2.39 -0.02 3.89 16 11 C -0.18 -6.32 6.97 -9.93 -0.07 -6.39 16 12 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 13 C 0.19 9.34 5.70 86.53 0.49 9.83 16 14 N -0.62 -31.99 3.38 -681.34 -2.30 -34.29 16 15 C -0.24 -13.55 10.35 84.03 0.87 -12.68 16 16 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 17 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 18 N -0.95 -57.22 10.86 21.65 0.24 -56.98 16 19 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.15 6.18 7.10 87.74 0.62 6.81 16 24 C -0.16 -5.32 7.33 -8.73 -0.06 -5.39 16 25 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 26 C -0.08 -1.14 2.12 -10.67 -0.02 -1.16 16 27 C -0.15 -3.08 5.01 30.69 0.15 -2.92 16 28 C 0.06 1.19 6.84 72.02 0.49 1.68 16 29 O -0.40 -7.90 10.77 -148.98 -1.60 -9.50 16 30 C 0.05 0.65 6.84 72.01 0.49 1.14 16 31 C -0.14 -1.57 5.32 30.69 0.16 -1.41 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.87 8.08 -2.38 -0.02 0.85 16 37 H 0.42 6.26 8.62 -92.71 -0.80 5.46 16 38 H 0.06 3.31 6.51 -2.39 -0.02 3.30 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 1.14 7.93 -2.38 -0.02 1.13 16 44 H 0.06 1.56 7.60 -2.39 -0.02 1.54 16 45 H 0.05 1.34 7.35 -2.39 -0.02 1.32 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.07 1.03 7.60 -2.39 -0.02 1.01 16 Total: -1.00 -77.05 404.46 0.88 -76.17 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.11 Total: 20.61 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.65 Total: 5.03 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -4.51 Total: -109.42 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -2.40 Total: -39.67 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.05 0.88 -76.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114633110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.515 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds