Wall clock time and date at job start Tue Mar 31 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47042 * 2 1 4 4 C 1.42908 * 113.99667 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.52487 * 30.07835 * 4 3 2 6 6 C 1.53070 * 109.62057 * 150.10644 * 4 3 2 7 7 C 1.53035 * 109.65742 * 181.16767 * 6 4 3 8 8 C 1.53197 * 109.31485 * 298.69846 * 7 6 4 9 9 N 1.46921 * 108.77267 * 54.63398 * 8 7 6 10 10 C 1.34778 * 120.62997 * 126.37263 * 9 8 7 11 11 O 1.21356 * 119.99820 * 175.02809 * 10 9 8 12 12 C 1.49448 * 120.00102 * 355.02760 * 10 9 8 13 13 O 1.21347 * 119.99448 * 85.34625 * 12 10 9 14 14 N 1.34777 * 120.00288 * 265.34818 * 12 10 9 15 15 C 1.46927 * 120.62785 * 4.76375 * 14 12 10 16 16 C 1.52757 * 109.00687 * 233.58253 * 15 14 12 17 17 C 1.53039 * 109.38531 * 305.59156 * 16 15 14 18 18 C 1.50699 * 109.46089 * 181.26128 * 17 16 15 19 19 H 1.08006 * 120.00115 * 265.14761 * 18 17 16 20 20 C 1.37871 * 120.00397 * 85.14960 * 18 17 16 21 21 N 1.31520 * 120.00589 * 185.05595 * 20 18 17 22 22 Si 1.86806 * 119.99929 * 5.05329 * 20 18 17 23 23 H 1.48500 * 109.46944 * 94.85522 * 22 20 18 24 24 H 1.48498 * 109.47042 * 214.85931 * 22 20 18 25 25 H 1.48503 * 109.46807 * 334.86090 * 22 20 18 26 26 C 1.53040 * 109.53973 * 61.23873 * 17 16 15 27 27 C 1.46919 * 120.62793 * 185.04506 * 14 12 10 28 28 C 1.46928 * 118.74040 * 306.39166 * 9 8 7 29 29 H 1.08997 * 109.47313 * 59.99874 * 1 2 3 30 30 H 1.09002 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47385 * 300.00469 * 1 2 3 32 32 H 1.08999 * 109.46968 * 239.99758 * 2 1 3 33 33 H 1.09008 * 109.47036 * 119.99753 * 2 1 3 34 34 H 1.09004 * 109.34832 * 61.14500 * 6 4 3 35 35 H 1.09000 * 109.44416 * 301.25184 * 6 4 3 36 36 H 1.08999 * 109.49962 * 178.74486 * 7 6 4 37 37 H 1.09002 * 109.52479 * 58.66973 * 7 6 4 38 38 H 1.09002 * 109.58473 * 294.84515 * 8 7 6 39 39 H 1.08996 * 109.70680 * 174.49092 * 8 7 6 40 40 H 1.08997 * 109.58786 * 353.41912 * 15 14 12 41 41 H 1.08996 * 109.58286 * 113.84511 * 15 14 12 42 42 H 1.09001 * 109.56786 * 185.55670 * 16 15 14 43 43 H 1.09007 * 109.36174 * 65.49964 * 16 15 14 44 44 H 1.09001 * 109.45964 * 301.22099 * 17 16 15 45 45 H 0.96993 * 120.00296 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.49938 * 178.68286 * 26 17 16 47 47 H 1.09007 * 109.52489 * 58.60230 * 26 17 16 48 48 H 1.09002 * 109.58765 * 246.15338 * 27 14 12 49 49 H 1.08997 * 109.59275 * 6.57818 * 27 14 12 50 50 H 1.09002 * 109.58653 * 173.39792 * 28 9 8 51 51 H 1.08992 * 109.58893 * 293.67968 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8640 0.6027 -0.5158 6 6 3.8444 2.7468 -0.7192 7 6 5.3707 2.8539 -0.7458 8 6 5.8998 2.9112 0.6908 9 7 5.3893 1.7483 1.4294 10 6 6.2334 0.9243 2.0814 11 8 5.7943 0.0204 2.7617 12 6 7.7100 1.1239 1.9667 13 8 8.2750 1.9080 2.7005 14 7 8.4141 0.4331 1.0483 15 6 7.7319 -0.4410 0.0843 16 6 8.3505 -1.8361 0.1532 17 6 9.8632 -1.7317 -0.0534 18 6 10.4713 -3.1101 -0.0166 19 1 10.8812 -3.4951 0.9055 20 6 10.5043 -3.8798 -1.1599 21 7 10.9434 -5.1184 -1.1066 22 14 9.9252 -3.1635 -2.7851 23 1 11.0908 -2.6287 -3.5337 24 1 9.2665 -4.2254 -3.5874 25 1 8.9579 -2.0669 -2.5260 26 6 10.4738 -0.8753 1.0583 27 6 9.8788 0.5350 0.9961 28 6 3.9412 1.5003 1.4433 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.4293 3.6050 -0.1905 35 1 3.4636 2.7305 -1.7404 36 1 5.6627 3.7596 -1.2774 37 1 5.7882 1.9840 -1.2528 38 1 5.5567 3.8280 1.1702 39 1 6.9895 2.8890 0.6823 40 1 6.6719 -0.5002 0.3312 41 1 7.8530 -0.0400 -0.9219 42 1 7.9195 -2.4654 -0.6255 43 1 8.1461 -2.2741 1.1303 44 1 10.0668 -1.2709 -1.0200 45 1 10.9663 -5.6600 -1.9109 46 1 11.5541 -0.8207 0.9238 47 1 10.2499 -1.3221 2.0271 48 1 10.1786 1.0173 0.0657 49 1 10.2350 1.1196 1.8443 50 1 3.7385 0.5459 1.9292 51 1 3.4386 2.3006 1.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117897459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:39 Heat of formation + Delta-G solvation = -120.961567 kcal Electronic energy + Delta-G solvation = -31381.886513 eV Core-core repulsion = 27280.990445 eV Total energy + Delta-G solvation = -4100.896067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12408 -39.54129 -38.40974 -37.17747 -36.91562 -33.63503 -33.12610 -31.87258 -31.63300 -30.76167 -30.04233 -27.24875 -26.16980 -24.20386 -23.67695 -22.81748 -22.76349 -22.16366 -20.81204 -19.67651 -18.66098 -17.90253 -17.16089 -16.90515 -16.77765 -16.63585 -15.95789 -15.40119 -15.04911 -14.84759 -14.71040 -14.47585 -14.40799 -13.91309 -13.53293 -13.51760 -13.39095 -13.23415 -13.05870 -12.90881 -12.73903 -12.62091 -12.49824 -12.12846 -11.92722 -11.86995 -11.55002 -11.43921 -11.41974 -11.28062 -11.07222 -10.91121 -10.84289 -10.51318 -10.12965 -10.06870 -9.76206 -9.54303 -9.44222 -9.22271 -9.00700 -8.60204 -8.43716 -6.14201 -4.13798 2.01034 2.13159 2.54095 3.15590 3.19646 3.27434 3.30049 3.38963 4.07608 4.33694 4.39083 4.42815 4.49277 4.56506 4.76016 4.77832 4.88920 5.03689 5.05086 5.06588 5.14194 5.20924 5.33072 5.39674 5.40177 5.44598 5.48520 5.51524 5.54938 5.57828 5.66005 5.70722 5.76078 5.80173 5.86145 5.86900 6.01055 6.09101 6.19897 6.51512 6.60448 6.68811 6.79531 6.83861 6.87953 7.17675 7.33872 7.36409 7.66075 7.68131 7.90503 8.45700 8.91897 9.48112 10.99178 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003565 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.727524 B = 7852.617842 C = 9102.121220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.378 6.378 4 C 0.078 3.922 5 H 0.068 0.932 6 C -0.115 4.115 7 C -0.133 4.133 8 C 0.104 3.896 9 N -0.598 5.598 10 C 0.522 3.478 11 O -0.507 6.507 12 C 0.514 3.486 13 O -0.526 6.526 14 N -0.580 5.580 15 C 0.101 3.899 16 C -0.128 4.128 17 C 0.017 3.983 18 C -0.512 4.512 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.899 5.899 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.261 1.261 26 C -0.118 4.118 27 C 0.107 3.893 28 C 0.091 3.909 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 16.910 -2.015 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.296 6.296 4 C 0.019 3.981 5 H 0.086 0.914 6 C -0.153 4.153 7 C -0.171 4.171 8 C -0.018 4.018 9 N -0.336 5.336 10 C 0.305 3.695 11 O -0.381 6.381 12 C 0.296 3.704 13 O -0.403 6.403 14 N -0.314 5.314 15 C -0.021 4.021 16 C -0.166 4.166 17 C -0.003 4.003 18 C -0.550 4.550 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.156 4.156 27 C -0.014 4.014 28 C -0.032 4.032 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.113 0.887 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.817 16.795 -1.361 23.806 hybrid contribution -0.177 -0.172 -0.938 0.970 sum -16.994 16.623 -2.299 23.883 Atomic orbital electron populations 1.21738 0.93556 1.02415 1.03035 1.22597 0.95692 0.83506 1.00600 1.87907 1.19928 1.26836 1.94947 1.22390 0.81527 0.99210 0.94971 0.91408 1.21591 0.95292 0.97023 1.01399 1.21931 0.95174 1.03819 0.96217 1.21873 0.99962 0.88127 0.91876 1.48033 1.06723 1.27659 1.51165 1.20458 0.87581 0.81672 0.79837 1.90810 1.77145 1.31631 1.38487 1.20013 0.87505 0.81506 0.81340 1.90776 1.70315 1.36029 1.43177 1.48223 1.08345 1.43554 1.31250 1.21966 0.95631 0.92915 0.91580 1.22235 0.99620 0.92343 1.02417 1.19124 0.90630 0.96358 0.94142 1.20977 1.38613 0.97706 0.97712 0.90908 1.25068 0.94627 0.94532 0.98919 1.69916 1.47109 1.07655 1.28953 0.86912 0.79482 0.79219 0.84216 1.20446 1.21492 1.18501 1.21945 1.00195 0.92488 1.00980 1.21953 0.77188 0.99839 1.02431 1.22115 0.79253 1.04119 0.97701 0.91898 0.90972 0.91825 0.93069 0.92978 0.90658 0.90579 0.89378 0.90812 0.90241 0.89402 0.91570 0.91130 0.91440 0.91865 0.95016 0.92652 0.90796 0.92200 0.91220 0.89538 0.88667 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.44 6.47 37.16 0.24 0.68 16 3 O -0.38 -3.64 10.00 -35.23 -0.35 -3.99 16 4 C 0.08 0.71 2.76 -26.59 -0.07 0.64 16 5 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 6 C -0.12 -0.85 5.54 -26.68 -0.15 -1.00 16 7 C -0.13 -0.95 6.08 -26.61 -0.16 -1.11 16 8 C 0.10 0.95 6.36 -3.71 -0.02 0.93 16 9 N -0.60 -7.12 2.97 -173.28 -0.52 -7.63 16 10 C 0.52 8.25 5.47 -11.59 -0.06 8.18 16 11 O -0.51 -9.52 16.53 5.49 0.09 -9.43 16 12 C 0.51 8.65 5.48 -11.59 -0.06 8.58 16 13 O -0.53 -9.88 16.51 5.50 0.09 -9.79 16 14 N -0.58 -9.41 2.98 -173.55 -0.52 -9.93 16 15 C 0.10 1.60 6.33 -3.93 -0.02 1.58 16 16 C -0.13 -2.50 4.97 -26.84 -0.13 -2.64 16 17 C 0.02 0.35 1.60 -91.73 -0.15 0.21 16 18 C -0.51 -13.61 8.86 -34.44 -0.31 -13.91 16 19 H 0.07 2.15 8.05 -52.48 -0.42 1.72 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 22 Si 0.87 20.08 26.36 -169.99 -4.48 15.60 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -5.44 5.91 56.52 0.33 -5.10 16 26 C -0.12 -2.21 5.34 -26.61 -0.14 -2.35 16 27 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 28 C 0.09 0.95 6.03 -3.71 -0.02 0.93 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.05 0.44 8.02 -51.92 -0.42 0.03 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.90 6.29 -51.93 -0.33 0.58 16 40 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.36 6.80 -51.93 -0.35 1.00 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.67 5.71 -51.93 -0.30 0.38 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.09 1.36 7.04 -51.93 -0.37 1.00 16 50 H 0.09 1.14 6.92 -51.93 -0.36 0.78 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -32.28 396.21 -8.56 -40.84 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.81 Total: 0.65 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.81 Total: 3.59 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.26 Total: -43.45 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.17 Total: -23.21 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.48 Total: 15.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.28 -8.56 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117897459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.119 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds