Wall clock time and date at job start Tue Mar 31 2020 21:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47042 * 2 1 4 4 C 1.42908 * 113.99667 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.52487 * 30.07835 * 4 3 2 6 6 C 1.53070 * 109.62057 * 150.10644 * 4 3 2 7 7 C 1.53035 * 109.65742 * 181.16767 * 6 4 3 8 8 C 1.53197 * 109.31485 * 298.69846 * 7 6 4 9 9 N 1.46921 * 108.77267 * 54.63398 * 8 7 6 10 10 C 1.34778 * 120.62997 * 126.37263 * 9 8 7 11 11 O 1.21356 * 119.99820 * 175.02809 * 10 9 8 12 12 C 1.49448 * 120.00102 * 355.02760 * 10 9 8 13 13 O 1.21347 * 119.99448 * 85.34625 * 12 10 9 14 14 N 1.34777 * 120.00288 * 265.34818 * 12 10 9 15 15 C 1.46927 * 120.62785 * 4.76375 * 14 12 10 16 16 C 1.52757 * 109.00687 * 233.58253 * 15 14 12 17 17 C 1.53039 * 109.38531 * 305.59156 * 16 15 14 18 18 C 1.50699 * 109.46089 * 181.26128 * 17 16 15 19 19 H 1.08006 * 120.00115 * 265.14761 * 18 17 16 20 20 C 1.37871 * 120.00397 * 85.14960 * 18 17 16 21 21 N 1.31520 * 120.00589 * 185.05595 * 20 18 17 22 22 Si 1.86806 * 119.99929 * 5.05329 * 20 18 17 23 23 H 1.48500 * 109.46944 * 94.85522 * 22 20 18 24 24 H 1.48498 * 109.47042 * 214.85931 * 22 20 18 25 25 H 1.48503 * 109.46807 * 334.86090 * 22 20 18 26 26 C 1.53040 * 109.53973 * 61.23873 * 17 16 15 27 27 C 1.46919 * 120.62793 * 185.04506 * 14 12 10 28 28 C 1.46928 * 118.74040 * 306.39166 * 9 8 7 29 29 H 1.08997 * 109.47313 * 59.99874 * 1 2 3 30 30 H 1.09002 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47385 * 300.00469 * 1 2 3 32 32 H 1.08999 * 109.46968 * 239.99758 * 2 1 3 33 33 H 1.09008 * 109.47036 * 119.99753 * 2 1 3 34 34 H 1.09004 * 109.34832 * 61.14500 * 6 4 3 35 35 H 1.09000 * 109.44416 * 301.25184 * 6 4 3 36 36 H 1.08999 * 109.49962 * 178.74486 * 7 6 4 37 37 H 1.09002 * 109.52479 * 58.66973 * 7 6 4 38 38 H 1.09002 * 109.58473 * 294.84515 * 8 7 6 39 39 H 1.08996 * 109.70680 * 174.49092 * 8 7 6 40 40 H 1.08997 * 109.58786 * 353.41912 * 15 14 12 41 41 H 1.08996 * 109.58286 * 113.84511 * 15 14 12 42 42 H 1.09001 * 109.56786 * 185.55670 * 16 15 14 43 43 H 1.09007 * 109.36174 * 65.49964 * 16 15 14 44 44 H 1.09001 * 109.45964 * 301.22099 * 17 16 15 45 45 H 0.96993 * 120.00296 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.49938 * 178.68286 * 26 17 16 47 47 H 1.09007 * 109.52489 * 58.60230 * 26 17 16 48 48 H 1.09002 * 109.58765 * 246.15338 * 27 14 12 49 49 H 1.08997 * 109.59275 * 6.57818 * 27 14 12 50 50 H 1.09002 * 109.58653 * 173.39792 * 28 9 8 51 51 H 1.08992 * 109.58893 * 293.67968 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8640 0.6027 -0.5158 6 6 3.8444 2.7468 -0.7192 7 6 5.3707 2.8539 -0.7458 8 6 5.8998 2.9112 0.6908 9 7 5.3893 1.7483 1.4294 10 6 6.2334 0.9243 2.0814 11 8 5.7943 0.0204 2.7617 12 6 7.7100 1.1239 1.9667 13 8 8.2750 1.9080 2.7005 14 7 8.4141 0.4331 1.0483 15 6 7.7319 -0.4410 0.0843 16 6 8.3505 -1.8361 0.1532 17 6 9.8632 -1.7317 -0.0534 18 6 10.4713 -3.1101 -0.0166 19 1 10.8812 -3.4951 0.9055 20 6 10.5043 -3.8798 -1.1599 21 7 10.9434 -5.1184 -1.1066 22 14 9.9252 -3.1635 -2.7851 23 1 11.0908 -2.6287 -3.5337 24 1 9.2665 -4.2254 -3.5874 25 1 8.9579 -2.0669 -2.5260 26 6 10.4738 -0.8753 1.0583 27 6 9.8788 0.5350 0.9961 28 6 3.9412 1.5003 1.4433 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.4293 3.6050 -0.1905 35 1 3.4636 2.7305 -1.7404 36 1 5.6627 3.7596 -1.2774 37 1 5.7882 1.9840 -1.2528 38 1 5.5567 3.8280 1.1702 39 1 6.9895 2.8890 0.6823 40 1 6.6719 -0.5002 0.3312 41 1 7.8530 -0.0400 -0.9219 42 1 7.9195 -2.4654 -0.6255 43 1 8.1461 -2.2741 1.1303 44 1 10.0668 -1.2709 -1.0200 45 1 10.9663 -5.6600 -1.9109 46 1 11.5541 -0.8207 0.9238 47 1 10.2499 -1.3221 2.0271 48 1 10.1786 1.0173 0.0657 49 1 10.2350 1.1196 1.8443 50 1 3.7385 0.5459 1.9292 51 1 3.4386 2.3006 1.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117897459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:38 Heat of formation + Delta-G solvation = -142.408453 kcal Electronic energy + Delta-G solvation = -31382.816519 eV Core-core repulsion = 27280.990445 eV Total energy + Delta-G solvation = -4101.826074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29332 -40.57917 -39.45645 -38.62937 -37.77613 -35.37778 -33.94378 -33.48316 -32.50287 -32.17496 -30.79061 -28.74677 -27.37143 -25.44424 -24.39162 -24.27470 -23.63497 -23.32635 -21.80275 -20.96612 -19.86738 -19.08169 -18.93321 -18.25814 -17.77304 -17.59883 -16.83468 -16.41068 -16.19188 -16.04717 -15.92534 -15.56840 -15.39425 -15.12814 -14.97682 -14.76408 -14.53636 -14.27593 -14.18955 -14.11414 -14.02225 -13.76133 -13.37967 -13.31749 -13.08967 -12.86041 -12.73077 -12.48066 -12.43734 -12.15560 -12.10727 -12.05975 -11.98945 -11.80787 -11.55865 -11.49251 -11.23141 -11.09998 -10.87650 -10.68620 -10.63336 -9.91663 -9.84104 -8.25494 -6.31331 0.81889 0.93432 1.30853 1.40306 1.41208 1.53386 2.10632 2.39772 2.64751 2.95472 3.09690 3.66981 3.72156 3.82347 3.86292 3.89492 4.07375 4.11452 4.15152 4.16880 4.19074 4.26068 4.37148 4.42489 4.47117 4.48737 4.51577 4.61779 4.67430 4.70512 4.75179 4.82158 4.85618 4.89391 4.98447 5.02039 5.02891 5.10555 5.13706 5.18359 5.25888 5.29283 5.32162 5.52353 5.66621 5.72882 5.84769 6.01742 6.17590 6.34767 6.52984 6.59896 6.76719 7.34954 8.91945 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003565 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.727524 B = 7852.617842 C = 9102.121220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.081 3.919 5 H 0.064 0.936 6 C -0.111 4.111 7 C -0.125 4.125 8 C 0.096 3.904 9 N -0.584 5.584 10 C 0.518 3.482 11 O -0.550 6.550 12 C 0.517 3.483 13 O -0.549 6.549 14 N -0.580 5.580 15 C 0.111 3.889 16 C -0.125 4.125 17 C 0.017 3.983 18 C -0.519 4.519 19 H 0.019 0.981 20 C 0.005 3.995 21 N -0.956 5.956 22 Si 0.944 3.056 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.218 1.218 26 C -0.114 4.114 27 C 0.115 3.885 28 C 0.090 3.910 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.077 0.923 47 H 0.033 0.967 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.546 20.409 -4.802 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.022 3.978 5 H 0.082 0.918 6 C -0.148 4.148 7 C -0.162 4.162 8 C -0.025 4.025 9 N -0.319 5.319 10 C 0.301 3.699 11 O -0.427 6.427 12 C 0.299 3.701 13 O -0.427 6.427 14 N -0.313 5.313 15 C -0.011 4.011 16 C -0.164 4.164 17 C -0.002 4.002 18 C -0.557 4.557 19 H 0.038 0.962 20 C -0.191 4.191 21 N -0.596 5.596 22 Si 0.767 3.233 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.140 1.140 26 C -0.153 4.153 27 C -0.006 4.006 28 C -0.032 4.032 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.122 0.878 49 H 0.107 0.893 50 H 0.093 0.907 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.587 20.353 -4.158 27.875 hybrid contribution 0.393 -1.323 0.066 1.382 sum -18.194 19.030 -4.092 26.644 Atomic orbital electron populations 1.21742 0.92428 1.03258 1.03026 1.22723 0.96692 0.83082 1.00503 1.87905 1.20143 1.27493 1.94870 1.22407 0.81339 1.00327 0.93734 0.91788 1.21594 0.95526 0.95952 1.01743 1.21922 0.94656 1.05115 0.94554 1.22190 0.99698 0.87423 0.93231 1.48134 1.06897 1.27255 1.49652 1.20346 0.87458 0.81954 0.80144 1.90797 1.77508 1.33709 1.40675 1.20191 0.87989 0.81140 0.80747 1.90759 1.70921 1.37174 1.43856 1.48269 1.08495 1.43290 1.31216 1.21926 0.95693 0.90298 0.93202 1.22063 0.98460 0.94997 1.00859 1.19100 0.91578 0.93608 0.95871 1.21279 1.38273 1.00366 0.95733 0.96249 1.26093 0.94806 0.94619 1.03591 1.70105 1.49512 1.09779 1.30233 0.85801 0.80022 0.79435 0.78075 1.19603 1.21994 1.14013 1.21834 1.00624 0.94132 0.98672 1.21920 0.76845 0.97483 1.04370 1.22222 0.78408 1.03488 0.99130 0.91591 0.89763 0.92092 0.92559 0.93715 0.89983 0.89519 0.86648 0.91002 0.88444 0.90113 0.90582 0.87600 0.91593 0.94675 0.93184 0.92702 0.90475 0.94850 0.87773 0.89311 0.90684 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.71 6.47 71.98 0.47 1.18 16 3 O -0.39 -6.66 10.00 -148.98 -1.49 -8.15 16 4 C 0.08 1.27 2.76 30.68 0.08 1.36 16 5 H 0.06 1.06 7.79 -2.39 -0.02 1.05 16 6 C -0.11 -1.19 5.54 30.63 0.17 -1.02 16 7 C -0.12 -1.21 6.08 30.67 0.19 -1.02 16 8 C 0.10 1.42 6.36 86.37 0.55 1.97 16 9 N -0.58 -12.73 2.97 -820.48 -2.44 -15.17 16 10 C 0.52 15.90 5.47 87.27 0.48 16.38 16 11 O -0.55 -20.88 16.53 -3.26 -0.05 -20.93 16 12 C 0.52 16.63 5.48 87.27 0.48 17.11 16 13 O -0.55 -19.97 16.51 -3.24 -0.05 -20.02 16 14 N -0.58 -17.48 2.98 -821.35 -2.45 -19.92 16 15 C 0.11 3.16 6.33 86.22 0.55 3.71 16 16 C -0.13 -4.76 4.97 30.53 0.15 -4.61 16 17 C 0.02 0.72 1.60 -11.51 -0.02 0.71 16 18 C -0.52 -28.47 8.86 25.60 0.23 -28.24 16 19 H 0.02 1.22 8.05 -2.91 -0.02 1.20 16 20 C 0.01 0.29 5.47 84.65 0.46 0.75 16 21 N -0.96 -58.96 13.96 21.45 0.30 -58.66 16 22 Si 0.94 40.25 26.36 68.60 1.81 42.06 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.22 -7.72 5.91 99.48 0.59 -7.14 16 26 C -0.11 -4.24 5.34 30.67 0.16 -4.08 16 27 C 0.11 3.36 6.42 86.36 0.55 3.91 16 28 C 0.09 1.75 6.03 86.36 0.52 2.27 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.04 0.74 8.02 -2.38 -0.02 0.72 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.38 6.29 -2.39 -0.02 1.37 16 40 H 0.08 2.07 6.31 -2.39 -0.02 2.06 16 41 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.07 2.52 6.80 -2.39 -0.02 2.50 16 43 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.05 1.93 5.71 -2.39 -0.01 1.92 16 45 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.09 2.62 7.04 -2.39 -0.02 2.60 16 50 H 0.07 1.79 6.92 -2.39 -0.02 1.78 16 51 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -74.63 396.21 2.17 -72.46 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.79 Total: 19.00 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.76 Total: 9.34 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -4.59 Total: -93.75 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -1.60 Total: -49.11 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.81 Total: 42.06 kcal Total: -74.63 2.17 -72.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117897459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.951 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds