Wall clock time and date at job start Tue Mar 31 2020 21:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.46588 * 2 1 4 4 C 1.42908 * 113.99548 * 180.02562 * 3 2 1 5 5 C 1.53041 * 109.45821 * 209.99639 * 4 3 2 6 6 C 1.53189 * 109.30957 * 178.61460 * 5 4 3 7 7 N 1.46923 * 108.77695 * 54.64368 * 6 5 4 8 8 C 1.34772 * 120.63531 * 126.36615 * 7 6 5 9 9 O 1.21352 * 120.00012 * 4.84587 * 8 7 6 10 10 C 1.49449 * 120.00187 * 185.11880 * 8 7 6 11 11 O 1.21350 * 120.00093 * 274.60137 * 10 8 7 12 12 N 1.34778 * 119.99833 * 94.60007 * 10 8 7 13 13 C 1.46922 * 120.63288 * 5.15579 * 12 10 8 14 14 C 1.53186 * 108.77690 * 126.36464 * 13 12 10 15 15 C 1.53043 * 109.31137 * 54.63688 * 14 13 12 16 16 C 1.53040 * 109.53799 * 298.63089 * 15 14 13 17 17 H 1.09001 * 109.50271 * 301.38540 * 16 15 14 18 18 C 1.50698 * 109.50079 * 181.31714 * 16 15 14 19 19 H 1.08003 * 119.99906 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00399 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99858 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 120.00118 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47013 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46910 * 120.00139 * 22 20 18 25 25 H 1.48507 * 109.47041 * 239.99870 * 22 20 18 26 26 C 1.46930 * 120.62672 * 184.87132 * 12 10 8 27 27 C 1.46926 * 118.73403 * 306.63876 * 7 6 5 28 28 C 1.52761 * 109.00819 * 53.31100 * 27 7 6 29 29 H 1.09003 * 109.47501 * 299.99520 * 1 2 3 30 30 H 1.08999 * 109.47537 * 59.99809 * 1 2 3 31 31 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47152 * 240.00842 * 2 1 3 33 33 H 1.08991 * 109.47252 * 119.99949 * 2 1 3 34 34 H 1.08996 * 109.45916 * 329.97419 * 4 3 2 35 35 H 1.09009 * 109.49305 * 58.66621 * 5 4 3 36 36 H 1.08991 * 109.52737 * 298.58596 * 5 4 3 37 37 H 1.09001 * 109.59396 * 294.85082 * 6 5 4 38 38 H 1.09003 * 109.58438 * 174.43103 * 6 5 4 39 39 H 1.08996 * 109.58938 * 246.15630 * 13 12 10 40 40 H 1.09001 * 109.58529 * 6.43767 * 13 12 10 41 41 H 1.09004 * 109.50295 * 174.58780 * 14 13 12 42 42 H 1.09003 * 109.50236 * 294.68413 * 14 13 12 43 43 H 1.08997 * 109.46098 * 58.65244 * 15 14 13 44 44 H 1.09003 * 109.45967 * 178.62730 * 15 14 13 45 45 H 0.96999 * 120.00156 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58814 * 353.42341 * 26 12 10 47 47 H 1.09001 * 109.58250 * 113.84630 * 26 12 10 48 48 H 1.09005 * 109.58935 * 173.14712 * 27 7 6 49 49 H 1.09002 * 109.58867 * 293.56602 * 27 7 6 50 50 H 1.09007 * 109.55930 * 185.55074 * 28 27 7 51 51 H 1.08998 * 109.38678 * 65.51408 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8406 2.7462 0.7209 6 6 5.3690 2.8464 0.7486 7 7 5.8750 2.7387 -0.6265 8 6 6.6965 3.6801 -1.1318 9 8 7.0955 4.5808 -0.4232 10 6 7.1112 3.6181 -2.5662 11 8 8.0636 2.9411 -2.8938 12 7 6.4275 4.3142 -3.4960 13 6 5.3443 5.2255 -3.1024 14 6 5.6178 6.6064 -3.7064 15 6 5.8051 6.4691 -5.2192 16 6 7.0094 5.5693 -5.5062 17 1 7.9008 5.9972 -5.0475 18 6 7.2127 5.4608 -6.9954 19 1 6.5492 5.9811 -7.6703 20 6 8.2450 4.6965 -7.4965 21 7 9.0520 4.0617 -6.6747 22 14 8.4965 4.5615 -9.3425 23 1 7.4611 5.3629 -10.0431 24 1 9.8442 5.0743 -9.6973 25 1 8.3837 3.1392 -9.7547 26 6 6.7554 4.1808 -4.9220 27 6 5.4635 1.5882 -1.4425 28 6 3.9385 1.4991 -1.4438 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8633 0.6018 0.5134 35 1 3.4586 2.7282 1.7417 36 1 3.4291 3.6067 0.1936 37 1 5.7775 2.0364 1.3528 38 1 5.6646 3.8061 1.1726 39 1 4.3933 4.8454 -3.4754 40 1 5.3069 5.3007 -2.0157 41 1 4.7744 7.2663 -3.5027 42 1 6.5223 7.0244 -3.2643 43 1 4.9098 6.0282 -5.6574 44 1 5.9757 7.4536 -5.6548 45 1 9.7786 3.5243 -7.0271 46 1 7.6502 3.5689 -5.0356 47 1 5.9218 3.7137 -5.4464 48 1 5.8215 1.7178 -2.4639 49 1 5.8799 0.6734 -1.0206 50 1 3.6263 0.5934 -1.9639 51 1 3.5256 2.3708 -1.9514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118439072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:49 Heat of formation + Delta-G solvation = -143.491345 kcal Electronic energy + Delta-G solvation = -31281.124966 eV Core-core repulsion = 27179.251935 eV Total energy + Delta-G solvation = -4101.873032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17690 -40.44758 -39.47104 -38.46635 -37.63623 -35.35900 -33.71332 -33.50476 -32.34042 -31.70049 -31.39410 -27.99608 -26.93643 -25.96004 -24.68515 -23.95974 -23.55710 -23.29700 -21.81488 -20.90340 -19.80127 -19.09771 -18.31005 -18.08315 -17.65061 -17.55324 -16.60446 -16.51873 -16.12079 -16.01233 -15.88163 -15.52414 -15.31620 -15.06031 -14.90829 -14.67349 -14.55243 -14.38673 -14.07658 -13.98830 -13.64191 -13.51023 -13.35528 -12.94129 -12.91565 -12.87642 -12.75261 -12.61687 -12.33510 -12.27676 -12.24084 -12.08327 -11.89327 -11.83813 -11.70540 -11.49755 -11.12595 -10.99554 -10.61815 -10.53656 -10.40785 -10.02523 -9.64473 -8.11505 -6.28903 0.90690 1.05606 1.40196 1.42838 1.46758 1.54964 2.28047 2.42819 2.67380 3.05438 3.17339 3.60895 3.75780 3.87939 3.90903 4.04598 4.04935 4.18276 4.23387 4.23807 4.31940 4.38633 4.39300 4.48190 4.55897 4.57340 4.64073 4.69713 4.71500 4.74519 4.77880 4.88631 4.95988 5.02215 5.05391 5.11250 5.14334 5.19835 5.20380 5.26881 5.31270 5.33924 5.40196 5.57705 5.83935 5.85920 5.94517 6.26282 6.31314 6.33578 6.57464 6.79261 6.87242 7.41690 8.92479 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002996 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.933793 B = 9343.400714 C = 9883.324117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.397 6.397 4 C 0.094 3.906 5 C -0.121 4.121 6 C 0.111 3.889 7 N -0.587 5.587 8 C 0.528 3.472 9 O -0.546 6.546 10 C 0.499 3.501 11 O -0.561 6.561 12 N -0.585 5.585 13 C 0.106 3.894 14 C -0.127 4.127 15 C -0.103 4.103 16 C 0.035 3.965 17 H -0.019 1.019 18 C -0.531 4.531 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.260 1.260 24 H -0.286 1.286 25 H -0.280 1.280 26 C 0.125 3.875 27 C 0.106 3.894 28 C -0.148 4.148 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.260 0.740 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 -8.355 16.114 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.317 6.317 4 C 0.036 3.964 5 C -0.160 4.160 6 C -0.010 4.010 7 N -0.322 5.322 8 C 0.310 3.690 9 O -0.423 6.423 10 C 0.281 3.719 11 O -0.439 6.439 12 N -0.317 5.317 13 C -0.016 4.016 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.015 3.985 17 H 0.000 1.000 18 C -0.569 4.569 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.212 1.212 25 H -0.206 1.206 26 C 0.003 3.997 27 C -0.016 4.016 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.063 -8.192 16.318 25.684 hybrid contribution 1.209 -0.251 -1.271 1.772 sum -16.854 -8.443 15.047 24.119 Atomic orbital electron populations 1.21764 0.93332 1.03150 1.02588 1.22696 0.96042 0.83076 1.00914 1.87928 1.20885 1.27823 1.95083 1.22056 0.81189 0.98798 0.94333 1.21925 0.93476 0.97615 1.02940 1.21920 0.93755 1.04904 0.80407 1.48220 1.45105 1.23033 1.15796 1.20114 0.78999 0.82307 0.87564 1.90745 1.55252 1.36146 1.60181 1.20622 0.83513 0.80798 0.86949 1.90797 1.28471 1.43680 1.80988 1.48590 1.34011 1.41499 1.07630 1.21978 0.89782 0.89935 0.99867 1.21902 1.02366 0.96102 0.96091 1.21516 0.98339 0.99493 0.94700 1.18872 0.93216 0.91571 0.94804 1.00048 1.21495 1.13560 1.29743 0.92133 0.91595 1.25911 0.95482 0.95182 1.02426 1.70089 1.17722 1.31741 1.35989 0.85476 0.77940 0.77900 0.80163 1.18343 1.21231 1.20604 1.21850 1.00747 1.01358 0.75705 1.21828 0.96066 0.88466 0.95229 1.22304 0.93141 1.04233 0.98954 0.92150 0.92675 0.89521 0.92840 0.92111 0.89918 0.87614 0.91453 0.88324 0.88986 0.88460 0.90139 0.87462 0.93882 0.91421 0.92629 0.93056 0.89998 0.92474 0.91697 0.88232 0.88740 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.56 6.47 71.98 0.47 1.02 16 3 O -0.40 -6.37 9.99 -148.98 -1.49 -7.86 16 4 C 0.09 1.31 2.57 30.62 0.08 1.39 16 5 C -0.12 -1.72 5.73 30.67 0.18 -1.54 16 6 C 0.11 1.97 6.42 86.36 0.55 2.52 16 7 N -0.59 -14.83 2.98 -821.32 -2.45 -17.27 16 8 C 0.53 18.78 5.61 87.27 0.49 19.27 16 9 O -0.55 -21.85 16.32 -3.25 -0.05 -21.90 16 10 C 0.50 21.54 5.48 87.27 0.48 22.02 16 11 O -0.56 -29.24 16.50 -3.25 -0.05 -29.29 16 12 N -0.58 -24.04 2.98 -821.32 -2.45 -26.49 16 13 C 0.11 3.33 6.33 86.36 0.55 3.88 16 14 C -0.13 -4.07 6.08 30.67 0.19 -3.89 16 15 C -0.10 -3.97 5.11 30.62 0.16 -3.82 16 16 C 0.03 1.75 2.24 -11.61 -0.03 1.72 16 17 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 18 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 19 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 20 C 0.01 0.52 5.30 84.65 0.45 0.97 16 21 N -0.92 -55.36 11.39 21.45 0.24 -55.12 16 22 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.12 6.08 5.39 86.22 0.46 6.54 16 27 C 0.11 2.29 6.33 86.22 0.55 2.83 16 28 C -0.15 -2.46 5.68 30.53 0.17 -2.29 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.56 7.84 -2.39 -0.02 0.54 16 33 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.08 0.86 7.79 -2.39 -0.02 0.84 16 35 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.88 7.03 -2.39 -0.02 1.87 16 39 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 2.37 6.22 -2.39 -0.01 2.36 16 41 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.08 4.79 5.10 -2.39 -0.01 4.77 16 47 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.06 1.81 6.30 -2.38 -0.02 1.79 16 49 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.09 1.33 7.84 -2.38 -0.02 1.31 16 51 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.36 398.98 2.38 -72.98 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.90 Total: 17.95 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.70 Total: 21.28 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.65 Total: -98.88 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -1.59 Total: -59.06 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -75.36 2.38 -72.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118439072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.514 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds