Wall clock time and date at job start Tue Mar 31 2020 21:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47294 * 2 1 4 4 C 1.42903 * 113.99891 * 179.97438 * 3 2 1 5 5 C 1.53043 * 109.46019 * 149.99880 * 4 3 2 6 6 C 1.53185 * 109.31470 * 181.36767 * 5 4 3 7 7 N 1.46923 * 108.77875 * 305.36830 * 6 5 4 8 8 C 1.34772 * 120.63098 * 233.58044 * 7 6 5 9 9 O 1.21352 * 120.00146 * 5.06933 * 8 7 6 10 10 C 1.49451 * 120.00125 * 185.06164 * 8 7 6 11 11 O 1.21343 * 119.99923 * 85.41121 * 10 8 7 12 12 N 1.34782 * 120.00208 * 265.41347 * 10 8 7 13 13 C 1.46926 * 120.62984 * 354.94341 * 12 10 8 14 14 C 1.53186 * 108.77732 * 233.59243 * 13 12 10 15 15 C 1.53049 * 109.31063 * 305.36208 * 14 13 12 16 16 C 1.53041 * 109.53481 * 61.36476 * 15 14 13 17 17 H 1.08999 * 109.49807 * 58.58884 * 16 15 14 18 18 C 1.50701 * 109.52310 * 178.66514 * 16 15 14 19 19 H 1.08002 * 119.99635 * 359.85860 * 18 16 15 20 20 C 1.37874 * 120.00256 * 179.85406 * 18 16 15 21 21 N 1.31515 * 119.99948 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00303 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47173 * 89.99888 * 22 20 18 24 24 H 1.48499 * 109.47396 * 210.00282 * 22 20 18 25 25 H 1.48510 * 109.47086 * 330.00086 * 22 20 18 26 26 C 1.46918 * 120.63181 * 174.92319 * 12 10 8 27 27 C 1.46930 * 118.73799 * 53.85909 * 7 6 5 28 28 C 1.53039 * 109.44784 * 270.05887 * 4 3 2 29 29 H 1.08999 * 109.47539 * 299.99825 * 1 2 3 30 30 H 1.08996 * 109.47007 * 60.00111 * 1 2 3 31 31 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47090 * 239.99548 * 2 1 3 33 33 H 1.09009 * 109.47010 * 120.00107 * 2 1 3 34 34 H 1.08996 * 109.46111 * 30.03016 * 4 3 2 35 35 H 1.09008 * 109.49586 * 61.41908 * 5 4 3 36 36 H 1.08997 * 109.52635 * 301.34154 * 5 4 3 37 37 H 1.09003 * 109.58957 * 185.57419 * 6 5 4 38 38 H 1.09008 * 109.70044 * 65.22438 * 6 5 4 39 39 H 1.09004 * 109.58698 * 353.37558 * 13 12 10 40 40 H 1.09001 * 109.58800 * 113.79947 * 13 12 10 41 41 H 1.08993 * 109.50180 * 65.31312 * 14 13 12 42 42 H 1.09003 * 109.49730 * 185.41261 * 14 13 12 43 43 H 1.08996 * 109.45643 * 301.34834 * 15 14 13 44 44 H 1.08997 * 109.45027 * 181.38095 * 15 14 13 45 45 H 0.97001 * 120.00532 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58931 * 246.19501 * 26 12 10 47 47 H 1.08997 * 109.58862 * 6.62425 * 26 12 10 48 48 H 1.09000 * 109.58682 * 65.92634 * 27 7 6 49 49 H 1.08999 * 109.58797 * 186.35360 * 27 7 6 50 50 H 1.09001 * 109.49923 * 298.57207 * 28 4 3 51 51 H 1.08999 * 109.49960 * 58.64312 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8409 2.7458 -0.7210 6 6 5.3692 2.8463 -0.7483 7 7 5.8749 2.7385 0.6269 8 6 6.6971 3.6795 1.1319 9 8 6.9531 4.6728 0.4835 10 6 7.2934 3.4997 2.4904 11 8 8.3178 2.8632 2.6239 12 7 6.6933 4.0445 3.5673 13 6 5.5157 4.9090 3.4106 14 6 5.7798 6.2367 4.1276 15 6 6.1661 5.9584 5.5821 16 6 7.4492 5.1251 5.6203 17 1 8.2474 5.6625 5.1082 18 6 7.8474 4.8790 7.0528 19 1 7.2469 5.2789 7.8565 20 6 8.9782 4.1432 7.3373 21 7 9.7096 3.6566 6.3587 22 14 9.4713 3.8375 9.1129 23 1 8.8365 2.5842 9.5941 24 1 10.9482 3.7101 9.2016 25 1 9.0212 4.9752 9.9546 26 6 7.2040 3.7848 4.9202 27 6 5.4724 1.5822 1.4391 28 6 3.9383 1.4989 1.4439 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8633 0.6016 -0.5134 35 1 3.4292 3.6062 -0.1932 36 1 3.4590 2.7284 -1.7417 37 1 5.6648 3.8059 -1.1723 38 1 5.7798 2.0376 -1.3531 39 1 5.3372 5.0950 2.3515 40 1 4.6446 4.4232 3.8503 41 1 6.5936 6.7636 3.6295 42 1 4.8789 6.8498 4.1014 43 1 5.3621 5.4098 6.0727 44 1 6.3307 6.9027 6.1010 45 1 10.5050 3.1387 6.5588 46 1 6.4707 3.2074 5.4830 47 1 8.1395 3.2290 4.8572 48 1 5.8892 0.6712 1.0097 49 1 5.8360 1.7076 2.4589 50 1 3.5258 2.3710 1.9512 51 1 3.6256 0.5936 1.9641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118439073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:53 Heat of formation + Delta-G solvation = -122.492483 kcal Electronic energy + Delta-G solvation = -31238.498273 eV Core-core repulsion = 27137.535820 eV Total energy + Delta-G solvation = -4100.962453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80901 -39.29127 -38.29244 -36.78215 -36.60908 -33.43991 -32.81861 -31.88544 -31.44491 -30.75194 -29.87826 -26.49142 -25.11025 -24.75271 -23.81141 -23.06628 -22.38479 -21.86835 -20.74304 -19.47553 -18.42724 -17.68945 -17.11424 -16.60789 -16.22650 -16.09313 -15.91077 -15.03168 -14.96391 -14.77650 -14.53419 -14.21381 -14.16059 -13.77789 -13.75140 -13.37560 -13.21035 -12.93120 -12.72871 -12.66714 -12.61323 -12.28775 -12.27021 -12.19527 -11.96387 -11.59111 -11.46103 -11.24007 -11.05534 -11.00520 -10.92345 -10.83060 -10.54932 -10.41413 -10.27600 -9.95800 -9.79501 -9.27133 -9.17164 -8.95346 -8.87726 -8.48690 -7.92858 -6.02817 -4.11998 2.33600 2.44548 2.97058 3.28257 3.28935 3.36613 3.38936 3.65722 4.34007 4.39787 4.42076 4.55515 4.67655 4.72842 4.75591 4.89801 4.97323 5.00916 5.03356 5.15817 5.25023 5.28110 5.35128 5.45386 5.46779 5.49018 5.52148 5.56643 5.62375 5.64453 5.75331 5.81147 5.91577 5.96488 6.15246 6.25406 6.27696 6.53412 6.60895 6.78864 6.91743 6.92412 6.99499 7.05980 7.10365 7.55195 7.80712 7.88528 7.90370 8.04503 8.30812 8.48741 8.92203 9.53875 11.02496 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002922 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.694835 B = 9578.619974 C =10047.772455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.092 3.908 5 C -0.129 4.129 6 C 0.113 3.887 7 N -0.603 5.603 8 C 0.521 3.479 9 O -0.518 6.518 10 C 0.506 3.494 11 O -0.509 6.509 12 N -0.587 5.587 13 C 0.108 3.892 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.031 0.969 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.110 3.890 27 C 0.110 3.890 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.264 0.736 46 H 0.050 0.950 47 H 0.125 0.875 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 -7.125 -14.014 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.034 3.966 5 C -0.167 4.167 6 C -0.010 4.010 7 N -0.339 5.339 8 C 0.304 3.696 9 O -0.392 6.392 10 C 0.287 3.713 11 O -0.383 6.383 12 N -0.321 5.321 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.148 4.148 16 C 0.020 3.980 17 H 0.049 0.951 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.013 4.013 28 C -0.193 4.193 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.143 0.857 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.389 -6.870 -14.304 22.812 hybrid contribution 0.427 -0.495 0.958 1.160 sum -15.962 -7.364 -13.346 22.071 Atomic orbital electron populations 1.21742 0.93768 1.02207 1.03166 1.22508 0.95589 0.83931 1.00037 1.87938 1.20734 1.26355 1.95049 1.22071 0.81152 0.98196 0.95203 1.21979 0.95154 0.97870 1.01706 1.21634 0.92609 1.04259 0.82450 1.48153 1.47106 1.24039 1.14596 1.20820 0.77975 0.82523 0.88276 1.90756 1.59195 1.28205 1.61047 1.19957 0.85548 0.81282 0.84550 1.90836 1.22369 1.40962 1.84171 1.48622 1.29077 1.46481 1.07895 1.21707 0.87872 0.91836 1.00159 1.21928 1.01147 0.95651 0.98371 1.21636 0.99745 1.00402 0.93018 1.18985 0.92063 0.91047 0.95948 0.95081 1.21064 1.09472 1.34063 0.91260 0.92242 1.25065 0.96178 0.95612 0.97224 1.69880 1.16045 1.34972 1.30909 0.86575 0.77725 0.78559 0.85037 1.20643 1.21199 1.19915 1.22468 1.00814 1.01529 0.76087 1.21844 0.94351 0.88457 0.96693 1.22505 0.94992 1.04024 0.97785 0.91765 0.91919 0.91180 0.93469 0.93307 0.91907 0.90293 0.89826 0.88048 0.90968 0.91379 0.91484 0.91802 0.91927 0.93063 0.92759 0.92574 0.93211 0.85738 0.90556 0.88982 0.90107 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.40 6.47 37.16 0.24 0.64 16 3 O -0.38 -3.60 9.99 -35.23 -0.35 -3.95 16 4 C 0.09 0.78 2.57 -26.69 -0.07 0.71 16 5 C -0.13 -1.12 5.73 -26.61 -0.15 -1.27 16 6 C 0.11 1.15 6.44 -3.72 -0.02 1.13 16 7 N -0.60 -7.97 2.97 -173.01 -0.51 -8.48 16 8 C 0.52 9.20 5.60 -11.59 -0.06 9.14 16 9 O -0.52 -10.28 16.31 5.50 0.09 -10.19 16 10 C 0.51 10.49 5.49 -11.58 -0.06 10.42 16 11 O -0.51 -12.48 16.51 5.50 0.09 -12.39 16 12 N -0.59 -11.72 2.97 -173.28 -0.52 -12.24 16 13 C 0.11 1.75 6.32 -3.71 -0.02 1.73 16 14 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 15 C -0.11 -2.17 5.11 -26.68 -0.14 -2.31 16 16 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.52 -13.81 8.57 -34.44 -0.29 -14.11 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.35 11.39 55.43 0.63 -24.72 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 26 C 0.11 2.58 5.41 -3.72 -0.02 2.56 16 27 C 0.11 1.23 6.35 -3.48 -0.02 1.21 16 28 C -0.15 -1.43 5.71 -26.39 -0.15 -1.58 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.05 0.32 7.84 -51.92 -0.41 -0.09 16 34 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 35 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.15 7.00 -51.93 -0.36 0.78 16 38 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.07 1.06 6.23 -51.93 -0.32 0.73 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.12 3.41 5.11 -51.93 -0.27 3.14 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.23 6.37 -51.93 -0.33 0.90 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.08 0.64 7.84 -51.93 -0.41 0.24 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -32.38 399.12 -9.24 -41.62 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.80 Total: 0.74 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.86 Total: 7.67 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.40 Total: -45.43 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.17 Total: -26.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.38 -9.24 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118439073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.874 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds