Wall clock time and date at job start Tue Mar 31 2020 21:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47294 * 2 1 4 4 C 1.42903 * 113.99891 * 179.97438 * 3 2 1 5 5 C 1.53043 * 109.46019 * 149.99880 * 4 3 2 6 6 C 1.53185 * 109.31470 * 181.36767 * 5 4 3 7 7 N 1.46923 * 108.77875 * 305.36830 * 6 5 4 8 8 C 1.34772 * 120.63098 * 233.58044 * 7 6 5 9 9 O 1.21352 * 120.00146 * 5.06933 * 8 7 6 10 10 C 1.49451 * 120.00125 * 185.06164 * 8 7 6 11 11 O 1.21343 * 119.99923 * 85.41121 * 10 8 7 12 12 N 1.34782 * 120.00208 * 265.41347 * 10 8 7 13 13 C 1.46926 * 120.62984 * 354.94341 * 12 10 8 14 14 C 1.53186 * 108.77732 * 233.59243 * 13 12 10 15 15 C 1.53049 * 109.31063 * 305.36208 * 14 13 12 16 16 C 1.53041 * 109.53481 * 61.36476 * 15 14 13 17 17 H 1.08999 * 109.49807 * 58.58884 * 16 15 14 18 18 C 1.50701 * 109.52310 * 178.66514 * 16 15 14 19 19 H 1.08002 * 119.99635 * 359.85860 * 18 16 15 20 20 C 1.37874 * 120.00256 * 179.85406 * 18 16 15 21 21 N 1.31515 * 119.99948 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00303 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47173 * 89.99888 * 22 20 18 24 24 H 1.48499 * 109.47396 * 210.00282 * 22 20 18 25 25 H 1.48510 * 109.47086 * 330.00086 * 22 20 18 26 26 C 1.46918 * 120.63181 * 174.92319 * 12 10 8 27 27 C 1.46930 * 118.73799 * 53.85909 * 7 6 5 28 28 C 1.53039 * 109.44784 * 270.05887 * 4 3 2 29 29 H 1.08999 * 109.47539 * 299.99825 * 1 2 3 30 30 H 1.08996 * 109.47007 * 60.00111 * 1 2 3 31 31 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47090 * 239.99548 * 2 1 3 33 33 H 1.09009 * 109.47010 * 120.00107 * 2 1 3 34 34 H 1.08996 * 109.46111 * 30.03016 * 4 3 2 35 35 H 1.09008 * 109.49586 * 61.41908 * 5 4 3 36 36 H 1.08997 * 109.52635 * 301.34154 * 5 4 3 37 37 H 1.09003 * 109.58957 * 185.57419 * 6 5 4 38 38 H 1.09008 * 109.70044 * 65.22438 * 6 5 4 39 39 H 1.09004 * 109.58698 * 353.37558 * 13 12 10 40 40 H 1.09001 * 109.58800 * 113.79947 * 13 12 10 41 41 H 1.08993 * 109.50180 * 65.31312 * 14 13 12 42 42 H 1.09003 * 109.49730 * 185.41261 * 14 13 12 43 43 H 1.08996 * 109.45643 * 301.34834 * 15 14 13 44 44 H 1.08997 * 109.45027 * 181.38095 * 15 14 13 45 45 H 0.97001 * 120.00532 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58931 * 246.19501 * 26 12 10 47 47 H 1.08997 * 109.58862 * 6.62425 * 26 12 10 48 48 H 1.09000 * 109.58682 * 65.92634 * 27 7 6 49 49 H 1.08999 * 109.58797 * 186.35360 * 27 7 6 50 50 H 1.09001 * 109.49923 * 298.57207 * 28 4 3 51 51 H 1.08999 * 109.49960 * 58.64312 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8409 2.7458 -0.7210 6 6 5.3692 2.8463 -0.7483 7 7 5.8749 2.7385 0.6269 8 6 6.6971 3.6795 1.1319 9 8 6.9531 4.6728 0.4835 10 6 7.2934 3.4997 2.4904 11 8 8.3178 2.8632 2.6239 12 7 6.6933 4.0445 3.5673 13 6 5.5157 4.9090 3.4106 14 6 5.7798 6.2367 4.1276 15 6 6.1661 5.9584 5.5821 16 6 7.4492 5.1251 5.6203 17 1 8.2474 5.6625 5.1082 18 6 7.8474 4.8790 7.0528 19 1 7.2469 5.2789 7.8565 20 6 8.9782 4.1432 7.3373 21 7 9.7096 3.6566 6.3587 22 14 9.4713 3.8375 9.1129 23 1 8.8365 2.5842 9.5941 24 1 10.9482 3.7101 9.2016 25 1 9.0212 4.9752 9.9546 26 6 7.2040 3.7848 4.9202 27 6 5.4724 1.5822 1.4391 28 6 3.9383 1.4989 1.4439 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8633 0.6016 -0.5134 35 1 3.4292 3.6062 -0.1932 36 1 3.4590 2.7284 -1.7417 37 1 5.6648 3.8059 -1.1723 38 1 5.7798 2.0376 -1.3531 39 1 5.3372 5.0950 2.3515 40 1 4.6446 4.4232 3.8503 41 1 6.5936 6.7636 3.6295 42 1 4.8789 6.8498 4.1014 43 1 5.3621 5.4098 6.0727 44 1 6.3307 6.9027 6.1010 45 1 10.5050 3.1387 6.5588 46 1 6.4707 3.2074 5.4830 47 1 8.1395 3.2290 4.8572 48 1 5.8892 0.6712 1.0097 49 1 5.8360 1.7076 2.4589 50 1 3.5258 2.3710 1.9512 51 1 3.6256 0.5936 1.9641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118439073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:52 Heat of formation + Delta-G solvation = -143.325942 kcal Electronic energy + Delta-G solvation = -31239.401680 eV Core-core repulsion = 27137.535820 eV Total energy + Delta-G solvation = -4101.865859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17060 -40.43713 -39.46121 -38.45705 -37.62071 -35.35437 -33.73066 -33.49866 -32.29127 -31.67932 -31.38729 -27.99012 -26.93223 -25.96041 -24.68540 -23.94664 -23.55448 -23.29105 -21.82353 -20.92458 -19.78095 -19.10144 -18.30422 -18.07782 -17.65041 -17.55755 -16.58931 -16.51390 -16.07193 -15.98361 -15.95143 -15.52144 -15.31369 -15.05055 -14.87936 -14.68557 -14.55868 -14.38776 -14.06446 -13.97945 -13.64211 -13.51612 -13.34347 -12.93479 -12.88731 -12.87669 -12.75367 -12.61647 -12.34991 -12.28074 -12.26606 -12.07766 -11.89279 -11.84148 -11.69902 -11.49827 -11.12113 -10.99695 -10.62134 -10.52964 -10.41234 -10.02184 -9.63839 -8.11142 -6.28572 0.92812 1.05567 1.40652 1.42647 1.45774 1.53943 2.27554 2.42962 2.67070 3.06522 3.17608 3.61066 3.75424 3.88309 3.90142 4.04761 4.05266 4.18596 4.23680 4.23869 4.31806 4.38392 4.39129 4.48502 4.56046 4.56896 4.64683 4.69602 4.71133 4.74477 4.77218 4.88962 4.96177 5.02330 5.05642 5.11406 5.14546 5.20054 5.20538 5.27271 5.30816 5.34051 5.40593 5.57650 5.84233 5.86100 5.94334 6.26458 6.31399 6.33665 6.57660 6.79386 6.87237 7.41945 8.92657 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002922 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.694835 B = 9578.619974 C =10047.772455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.397 6.397 4 C 0.093 3.907 5 C -0.121 4.121 6 C 0.110 3.890 7 N -0.587 5.587 8 C 0.527 3.473 9 O -0.547 6.547 10 C 0.499 3.501 11 O -0.560 6.560 12 N -0.586 5.586 13 C 0.106 3.894 14 C -0.127 4.127 15 C -0.103 4.103 16 C 0.035 3.965 17 H -0.019 1.019 18 C -0.532 4.532 19 H 0.066 0.934 20 C 0.010 3.990 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.290 1.290 25 H -0.264 1.264 26 C 0.124 3.876 27 C 0.105 3.895 28 C -0.146 4.146 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.260 -7.945 -14.547 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.317 6.317 4 C 0.036 3.964 5 C -0.159 4.159 6 C -0.011 4.011 7 N -0.321 5.321 8 C 0.309 3.691 9 O -0.424 6.424 10 C 0.282 3.718 11 O -0.438 6.438 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.016 3.984 17 H -0.001 1.001 18 C -0.570 4.570 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.216 1.216 25 H -0.188 1.188 26 C 0.003 3.997 27 C -0.017 4.017 28 C -0.184 4.184 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.100 0.900 48 H 0.116 0.884 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.578 -7.696 -14.850 25.749 hybrid contribution 1.347 -0.272 1.092 1.755 sum -18.231 -7.968 -13.758 24.189 Atomic orbital electron populations 1.21762 0.93323 1.03153 1.02591 1.22697 0.96043 0.83067 1.00926 1.87924 1.20870 1.27834 1.95092 1.22058 0.81191 0.98704 0.94487 1.21905 0.93447 0.97633 1.02880 1.21915 0.93915 1.04822 0.80446 1.48233 1.44992 1.23028 1.15894 1.20130 0.78899 0.83330 0.86693 1.90744 1.60872 1.29646 1.61156 1.20615 0.84946 0.80286 0.85984 1.90795 1.24597 1.43169 1.85262 1.48618 1.29868 1.46655 1.06665 1.21990 0.87156 0.91182 1.01265 1.21903 1.02327 0.96295 0.95951 1.21516 0.97540 0.99617 0.95367 1.18941 0.93081 0.91817 0.94574 1.00069 1.21471 1.09554 1.33505 0.92504 0.91598 1.25907 0.96330 0.95494 1.01240 1.70084 1.16417 1.35931 1.33116 0.85531 0.76949 0.78908 0.80129 1.19641 1.21648 1.18832 1.21939 0.99297 1.00459 0.78014 1.22024 0.96103 0.88267 0.95292 1.22438 0.92831 1.04330 0.98814 0.92607 0.92208 0.89523 0.92190 0.92756 0.89989 0.91531 0.87748 0.89103 0.88320 0.90188 0.88298 0.93941 0.87489 0.91348 0.92680 0.93058 0.92338 0.90042 0.88428 0.91437 0.91163 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.05 0.55 6.47 71.98 0.47 1.01 16 3 O -0.40 -6.30 9.99 -148.98 -1.49 -7.79 16 4 C 0.09 1.29 2.57 30.62 0.08 1.37 16 5 C -0.12 -1.74 5.73 30.67 0.18 -1.56 16 6 C 0.11 1.99 6.44 86.36 0.56 2.55 16 7 N -0.59 -14.84 2.97 -819.63 -2.43 -17.27 16 8 C 0.53 18.77 5.60 87.27 0.49 19.26 16 9 O -0.55 -21.97 16.31 -3.25 -0.05 -22.02 16 10 C 0.50 21.52 5.49 87.27 0.48 22.00 16 11 O -0.56 -29.23 16.51 -3.22 -0.05 -29.28 16 12 N -0.59 -23.93 2.97 -820.51 -2.44 -26.37 16 13 C 0.11 3.30 6.32 86.36 0.55 3.84 16 14 C -0.13 -4.07 6.08 30.67 0.19 -3.88 16 15 C -0.10 -3.96 5.11 30.62 0.16 -3.80 16 16 C 0.04 1.77 2.25 -11.46 -0.03 1.74 16 17 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 18 C -0.53 -28.78 8.57 25.60 0.22 -28.56 16 19 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 20 C 0.01 0.54 5.30 84.65 0.45 0.99 16 21 N -0.92 -55.36 11.39 21.45 0.24 -55.12 16 22 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.12 6.02 5.41 86.36 0.47 6.49 16 27 C 0.11 2.22 6.35 86.51 0.55 2.77 16 28 C -0.15 -2.33 5.71 30.82 0.18 -2.16 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.52 8.09 -2.39 -0.02 0.50 16 33 H 0.05 0.55 7.84 -2.38 -0.02 0.53 16 34 H 0.08 0.85 7.79 -2.39 -0.02 0.84 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.92 7.00 -2.39 -0.02 1.90 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 2.36 6.23 -2.39 -0.01 2.34 16 40 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.08 4.74 5.11 -2.39 -0.01 4.73 16 48 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.07 1.80 6.37 -2.39 -0.02 1.79 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 Total: -1.00 -75.40 399.12 2.42 -72.99 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.90 Total: 17.91 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 5.71 Total: 21.31 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.63 Total: -98.76 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -1.59 Total: -59.09 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.40 2.42 -72.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118439073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.341 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds