Wall clock time and date at job start Tue Mar 31 2020 20:45:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46498 * 109.46851 * 2 1
4 4 C 1.46506 * 120.00238 * 262.06201 * 3 2 1
5 5 C 1.52996 * 109.47361 * 270.00820 * 4 3 2
6 6 H 1.09002 * 109.82160 * 305.56473 * 5 4 3
7 7 C 1.54378 * 109.83303 * 184.58544 * 5 4 3
8 8 C 1.55305 * 102.25537 * 219.12793 * 7 5 4
9 9 C 1.54941 * 100.93935 * 34.13147 * 8 7 5
10 10 O 1.43243 * 109.83409 * 66.44660 * 5 4 3
11 11 C 1.34771 * 120.00143 * 82.07171 * 3 2 1
12 12 O 1.21352 * 120.00214 * 183.18117 * 11 3 2
13 13 C 1.49450 * 120.00122 * 3.17396 * 11 3 2
14 14 O 1.21355 * 119.99799 * 6.72381 * 13 11 3
15 15 N 1.34774 * 120.00350 * 186.71686 * 13 11 3
16 16 C 1.46924 * 120.63137 * 357.84246 * 15 13 11
17 17 C 1.53187 * 108.77983 * 126.41074 * 16 15 13
18 18 C 1.53043 * 109.34029 * 54.61790 * 17 16 15
19 19 C 1.53040 * 109.53669 * 298.68812 * 18 17 16
20 20 H 1.09004 * 109.49780 * 301.34351 * 19 18 17
21 21 C 1.50700 * 109.49526 * 181.28292 * 19 18 17
22 22 H 1.08001 * 120.00122 * 354.20867 * 21 19 18
23 23 C 1.37881 * 120.00093 * 174.20871 * 21 19 18
24 24 N 1.31514 * 120.00229 * 152.57788 * 23 21 19
25 25 Si 1.86801 * 120.00027 * 332.57467 * 23 21 19
26 26 H 1.48500 * 109.47289 * 179.97438 * 25 23 21
27 27 H 1.48504 * 109.47073 * 300.00154 * 25 23 21
28 28 H 1.48500 * 109.47046 * 59.99985 * 25 23 21
29 29 C 1.46924 * 120.63230 * 177.85919 * 15 13 11
30 30 H 1.09007 * 109.47165 * 59.99966 * 1 2 3
31 31 H 1.08996 * 109.47006 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47079 * 300.00191 * 1 2 3
33 33 H 1.09005 * 109.47019 * 240.00246 * 2 1 3
34 34 H 1.08994 * 109.46936 * 119.99955 * 2 1 3
35 35 H 1.08998 * 109.46548 * 30.00405 * 4 3 2
36 36 H 1.08995 * 109.47099 * 149.99872 * 4 3 2
37 37 H 1.08999 * 110.84840 * 337.32041 * 7 5 4
38 38 H 1.09006 * 110.85144 * 100.93060 * 7 5 4
39 39 H 1.08998 * 111.12087 * 276.21518 * 8 7 5
40 40 H 1.08998 * 111.15945 * 152.06556 * 8 7 5
41 41 H 1.09002 * 110.31249 * 204.64069 * 9 8 7
42 42 H 1.08996 * 110.39534 * 82.51682 * 9 8 7
43 43 H 1.09006 * 109.58737 * 246.19940 * 16 15 13
44 44 H 1.09006 * 109.58703 * 6.47683 * 16 15 13
45 45 H 1.08995 * 109.50004 * 174.58788 * 17 16 15
46 46 H 1.09007 * 109.49939 * 294.68708 * 17 16 15
47 47 H 1.08999 * 109.48700 * 178.65066 * 18 17 16
48 48 H 1.09002 * 109.43278 * 58.68765 * 18 17 16
49 49 H 0.97004 * 119.99632 * 354.96353 * 24 23 21
50 50 H 1.08997 * 109.58644 * 113.80079 * 29 15 13
51 51 H 1.09000 * 109.58966 * 353.37948 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.4277 2.0135 -1.2566
5 6 3.9171 1.7573 -1.4950
6 1 4.4920 2.0873 -0.6297
7 6 4.3837 2.5155 -2.7562
8 6 5.3562 1.4974 -3.4119
9 6 4.6732 0.1572 -3.0404
10 8 4.1397 0.3607 -1.7222
11 6 2.0911 2.0702 1.1560
12 8 2.4406 3.2323 1.1488
13 6 1.7414 1.4032 2.4468
14 8 1.5104 0.2121 2.4712
15 7 1.6827 2.1244 3.5839
16 6 2.0057 3.5576 3.5788
17 6 0.8396 4.3282 4.2056
18 6 0.5417 3.7561 5.5935
19 6 0.1365 2.2859 5.4647
20 1 -0.7401 2.2050 4.8219
21 6 -0.1870 1.7321 6.8284
22 1 -0.0222 2.3351 7.7092
23 6 -0.6934 0.4556 6.9518
24 7 -0.4837 -0.2315 8.0534
25 14 -1.6776 -0.2979 5.5542
26 1 -2.1058 -1.6684 5.9330
27 1 -2.8747 0.5385 5.2846
28 1 -0.8341 -0.3629 4.3337
29 6 1.2947 1.4922 4.8521
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8934 -0.5138 -0.8901
34 1 1.8933 -0.5138 0.8899
35 1 1.8504 1.5928 -2.0799
36 1 2.2483 3.0870 -1.1984
37 1 3.5417 2.7273 -3.4152
38 1 4.9066 3.4330 -2.4862
39 1 6.3514 1.5662 -2.9728
40 1 5.3961 1.6316 -4.4929
41 1 5.4049 -0.6507 -3.0317
42 1 3.8707 -0.0677 -3.7428
43 1 2.9119 3.7300 4.1596
44 1 2.1596 3.8939 2.5534
45 1 1.1060 5.3813 4.2958
46 1 -0.0435 4.2286 3.5744
47 1 -0.2721 4.3182 6.0515
48 1 1.4326 3.8339 6.2167
49 1 0.0877 0.1300 8.7490
50 1 2.1428 1.4961 5.5368
51 1 0.9769 0.4662 4.6668
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118502959.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:45:31
Heat of formation + Delta-G solvation = -92.793459 kcal
Electronic energy + Delta-G solvation = -31603.308831 eV
Core-core repulsion = 27503.634224 eV
Total energy + Delta-G solvation = -4099.674606 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.96144 -39.76862 -38.40298 -37.32524 -35.90721 -33.29613 -32.60128 -31.90518
-31.65676 -30.28175 -29.70868 -26.88259 -25.28459 -24.83587 -23.54121 -22.48737
-21.92500 -21.73416 -21.14635 -19.39835 -18.66314 -17.58089 -17.28039 -16.93352
-16.63081 -16.40510 -15.90376 -15.64374 -14.92665 -14.70957 -14.14378 -14.04420
-13.90288 -13.78607 -13.73201 -13.43826 -13.28544 -13.24963 -12.78037 -12.53170
-12.32944 -12.29276 -12.09237 -12.03247 -11.83208 -11.69076 -11.50043 -11.46035
-11.24702 -11.14280 -10.84802 -10.75733 -10.33438 -10.29151 -10.01282 -9.79236
-9.65157 -9.54196 -9.13585 -8.86230 -8.44550 -8.12571 -8.06465 -6.49353
-4.08046 1.65626 2.49354 3.46254 3.48588 3.49318 3.54401 3.67361
3.68357 4.10204 4.34226 4.44138 4.50303 4.53901 4.78418 4.81649
4.91233 5.15230 5.16970 5.21927 5.24341 5.32129 5.36984 5.43626
5.47963 5.51967 5.55523 5.56034 5.60985 5.71725 5.78883 5.83432
6.03674 6.10544 6.18536 6.28170 6.30921 6.34183 6.48070 6.58282
6.66094 6.70820 6.72406 6.83491 6.93425 7.13219 7.23722 7.44466
7.75591 7.93807 8.14325 8.36628 8.39688 8.89457 9.56147 10.85841
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.018036 B = 0.003274 C = 0.002965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.071831 B = 8551.470823 C = 9439.822192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.086 3.914
3 N -0.575 5.575
4 C 0.103 3.897
5 C 0.065 3.935
6 H 0.085 0.915
7 C -0.147 4.147
8 C -0.156 4.156
9 C 0.048 3.952
10 O -0.371 6.371
11 C 0.511 3.489
12 O -0.520 6.520
13 C 0.495 3.505
14 O -0.520 6.520
15 N -0.568 5.568
16 C 0.049 3.951
17 C -0.133 4.133
18 C -0.104 4.104
19 C 0.018 3.982
20 H 0.022 0.978
21 C -0.613 4.613
22 H 0.060 0.940
23 C 0.044 3.956
24 N -0.888 5.888
25 Si 1.023 2.977
26 H -0.285 1.285
27 H -0.284 1.284
28 H -0.267 1.267
29 C 0.105 3.895
30 H 0.046 0.954
31 H 0.068 0.932
32 H 0.058 0.942
33 H 0.079 0.921
34 H 0.124 0.876
35 H 0.084 0.916
36 H 0.097 0.903
37 H 0.080 0.920
38 H 0.085 0.915
39 H 0.078 0.922
40 H 0.083 0.917
41 H 0.084 0.916
42 H 0.059 0.941
43 H 0.059 0.941
44 H 0.150 0.850
45 H 0.063 0.937
46 H 0.057 0.943
47 H 0.054 0.946
48 H 0.051 0.949
49 H 0.271 0.729
50 H 0.064 0.936
51 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.281 5.087 -24.819 26.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.035 4.035
3 N -0.306 5.306
4 C -0.020 4.020
5 C 0.006 3.994
6 H 0.103 0.897
7 C -0.186 4.186
8 C -0.194 4.194
9 C -0.029 4.029
10 O -0.290 6.290
11 C 0.296 3.704
12 O -0.399 6.399
13 C 0.277 3.723
14 O -0.399 6.399
15 N -0.300 5.300
16 C -0.073 4.073
17 C -0.171 4.171
18 C -0.141 4.141
19 C -0.002 4.002
20 H 0.040 0.960
21 C -0.650 4.650
22 H 0.078 0.922
23 C -0.164 4.164
24 N -0.520 5.520
25 Si 0.850 3.150
26 H -0.210 1.210
27 H -0.211 1.211
28 H -0.192 1.192
29 C -0.015 4.015
30 H 0.065 0.935
31 H 0.087 0.913
32 H 0.077 0.923
33 H 0.097 0.903
34 H 0.141 0.859
35 H 0.103 0.897
36 H 0.115 0.885
37 H 0.098 0.902
38 H 0.104 0.896
39 H 0.097 0.903
40 H 0.101 0.899
41 H 0.102 0.898
42 H 0.077 0.923
43 H 0.077 0.923
44 H 0.166 0.834
45 H 0.081 0.919
46 H 0.076 0.924
47 H 0.073 0.927
48 H 0.070 0.930
49 H 0.081 0.919
50 H 0.082 0.918
51 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 8.417 3.536 -25.044 26.657
hybrid contribution 0.869 1.572 0.428 1.846
sum 9.286 5.108 -24.617 26.801
Atomic orbital electron populations
1.22104 0.95849 1.02482 1.01528 1.22330 0.94465 0.80813 1.05932
1.47834 1.61908 1.15133 1.05725 1.22016 0.94327 0.99796 0.85879
1.23228 0.95923 0.81854 0.98369 0.89741 1.23106 0.99730 0.99376
0.96355 1.23258 0.99645 0.94806 1.01655 1.23390 0.97077 0.97522
0.84882 1.88518 1.84686 1.23662 1.32176 1.20611 0.78058 0.86055
0.85666 1.90249 1.48207 1.16357 1.85067 1.19839 0.80322 0.87177
0.84939 1.90607 1.49626 1.14403 1.85250 1.48472 1.62766 1.10542
1.08171 1.23218 0.97181 0.79231 1.07628 1.21950 0.98215 0.98602
0.98323 1.21507 1.00481 0.97795 0.94361 1.19225 0.92461 0.91374
0.97120 0.95997 1.21789 1.49739 1.01975 0.91494 0.92225 1.25727
0.95965 0.93717 1.00964 1.70866 1.35020 1.37117 1.08951 0.84303
0.77617 0.76378 0.76729 1.21034 1.21086 1.19219 1.22779 0.99281
0.98941 0.80543 0.93475 0.91315 0.92309 0.90305 0.85857 0.89734
0.88498 0.90166 0.89615 0.90314 0.89878 0.89790 0.92267 0.92258
0.83431 0.91887 0.92422 0.92711 0.92994 0.91933 0.91786 0.89461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.09 9.80 37.16 0.36 -1.73 16
2 C 0.09 1.14 5.51 -4.04 -0.02 1.12 16
3 N -0.57 -7.72 2.47 -174.19 -0.43 -8.15 16
4 C 0.10 1.04 4.94 -4.04 -0.02 1.02 16
5 C 0.06 0.63 3.77 -26.01 -0.10 0.53 16
6 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
7 C -0.15 -0.95 6.54 -24.79 -0.16 -1.11 16
8 C -0.16 -0.90 7.16 -24.48 -0.18 -1.07 16
9 C 0.05 0.35 7.78 38.18 0.30 0.64 16
10 O -0.37 -3.98 10.11 -35.23 -0.36 -4.33 16
11 C 0.51 8.27 7.58 -11.59 -0.09 8.18 16
12 O -0.52 -8.44 12.58 5.50 0.07 -8.37 16
13 C 0.50 9.49 7.29 -11.59 -0.08 9.41 16
14 O -0.52 -10.82 11.70 5.49 0.06 -10.75 16
15 N -0.57 -11.30 2.97 -173.28 -0.52 -11.81 16
16 C 0.05 0.84 6.24 -3.71 -0.02 0.81 16
17 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16
18 C -0.10 -2.11 5.11 -26.69 -0.14 -2.25 16
19 C 0.02 0.43 1.86 -91.65 -0.17 0.26 16
20 H 0.02 0.55 6.67 -51.93 -0.35 0.20 16
21 C -0.61 -17.06 8.72 -34.44 -0.30 -17.36 16
22 H 0.06 1.77 7.99 -52.49 -0.42 1.35 16
23 C 0.04 1.27 5.24 -17.82 -0.09 1.18 16
24 N -0.89 -27.04 13.70 55.43 0.76 -26.28 16
25 Si 1.02 25.76 26.72 -169.99 -4.54 21.22 16
26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16
27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
28 H -0.27 -6.58 6.18 56.52 0.35 -6.23 16
29 C 0.10 2.41 5.43 -3.71 -0.02 2.39 16
30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.06 0.93 7.18 -51.93 -0.37 0.55 16
33 H 0.08 0.91 7.34 -51.93 -0.38 0.52 16
34 H 0.12 1.97 5.18 -52.13 -0.27 1.70 16
35 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16
36 H 0.10 0.97 7.38 -51.93 -0.38 0.58 16
37 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16
38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16
39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
44 H 0.15 2.46 3.76 -57.04 -0.21 2.25 16
45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
47 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16
48 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
49 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16
50 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16
51 H 0.09 2.19 4.79 -51.93 -0.25 1.94 16
LS Contribution 388.62 15.07 5.86 5.86
Total: -1.00 -31.62 388.62 -8.58 -40.19
By element:
Atomic # 1 Polarization: 11.42 SS G_CDS: -8.59 Total: 2.83 kcal
Atomic # 6 Polarization: 0.48 SS G_CDS: -0.89 Total: -0.41 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: -0.19 Total: -46.24 kcal
Atomic # 8 Polarization: -23.23 SS G_CDS: -0.22 Total: -23.46 kcal
Atomic # 14 Polarization: 25.76 SS G_CDS: -4.54 Total: 21.22 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -31.62 -8.58 -40.19 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118502959.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.598 kcal
(2) G-P(sol) polarization free energy of solvation -31.619 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds