Wall clock time and date at job start Tue Mar 31 2020 20:45:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46498 * 109.46851 * 2 1
4 4 C 1.46506 * 120.00238 * 262.06201 * 3 2 1
5 5 C 1.52996 * 109.47361 * 270.00820 * 4 3 2
6 6 H 1.09002 * 109.82160 * 305.56473 * 5 4 3
7 7 C 1.54378 * 109.83303 * 184.58544 * 5 4 3
8 8 C 1.55305 * 102.25537 * 219.12793 * 7 5 4
9 9 C 1.54941 * 100.93935 * 34.13147 * 8 7 5
10 10 O 1.43243 * 109.83409 * 66.44660 * 5 4 3
11 11 C 1.34771 * 120.00143 * 82.07171 * 3 2 1
12 12 O 1.21352 * 120.00214 * 183.18117 * 11 3 2
13 13 C 1.49450 * 120.00122 * 3.17396 * 11 3 2
14 14 O 1.21355 * 119.99799 * 6.72381 * 13 11 3
15 15 N 1.34774 * 120.00350 * 186.71686 * 13 11 3
16 16 C 1.46924 * 120.63137 * 357.84246 * 15 13 11
17 17 C 1.53187 * 108.77983 * 126.41074 * 16 15 13
18 18 C 1.53043 * 109.34029 * 54.61790 * 17 16 15
19 19 C 1.53040 * 109.53669 * 298.68812 * 18 17 16
20 20 H 1.09004 * 109.49780 * 301.34351 * 19 18 17
21 21 C 1.50700 * 109.49526 * 181.28292 * 19 18 17
22 22 H 1.08001 * 120.00122 * 354.20867 * 21 19 18
23 23 C 1.37881 * 120.00093 * 174.20871 * 21 19 18
24 24 N 1.31514 * 120.00229 * 152.57788 * 23 21 19
25 25 Si 1.86801 * 120.00027 * 332.57467 * 23 21 19
26 26 H 1.48500 * 109.47289 * 179.97438 * 25 23 21
27 27 H 1.48504 * 109.47073 * 300.00154 * 25 23 21
28 28 H 1.48500 * 109.47046 * 59.99985 * 25 23 21
29 29 C 1.46924 * 120.63230 * 177.85919 * 15 13 11
30 30 H 1.09007 * 109.47165 * 59.99966 * 1 2 3
31 31 H 1.08996 * 109.47006 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47079 * 300.00191 * 1 2 3
33 33 H 1.09005 * 109.47019 * 240.00246 * 2 1 3
34 34 H 1.08994 * 109.46936 * 119.99955 * 2 1 3
35 35 H 1.08998 * 109.46548 * 30.00405 * 4 3 2
36 36 H 1.08995 * 109.47099 * 149.99872 * 4 3 2
37 37 H 1.08999 * 110.84840 * 337.32041 * 7 5 4
38 38 H 1.09006 * 110.85144 * 100.93060 * 7 5 4
39 39 H 1.08998 * 111.12087 * 276.21518 * 8 7 5
40 40 H 1.08998 * 111.15945 * 152.06556 * 8 7 5
41 41 H 1.09002 * 110.31249 * 204.64069 * 9 8 7
42 42 H 1.08996 * 110.39534 * 82.51682 * 9 8 7
43 43 H 1.09006 * 109.58737 * 246.19940 * 16 15 13
44 44 H 1.09006 * 109.58703 * 6.47683 * 16 15 13
45 45 H 1.08995 * 109.50004 * 174.58788 * 17 16 15
46 46 H 1.09007 * 109.49939 * 294.68708 * 17 16 15
47 47 H 1.08999 * 109.48700 * 178.65066 * 18 17 16
48 48 H 1.09002 * 109.43278 * 58.68765 * 18 17 16
49 49 H 0.97004 * 119.99632 * 354.96353 * 24 23 21
50 50 H 1.08997 * 109.58644 * 113.80079 * 29 15 13
51 51 H 1.09000 * 109.58966 * 353.37948 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.4277 2.0135 -1.2566
5 6 3.9171 1.7573 -1.4950
6 1 4.4920 2.0873 -0.6297
7 6 4.3837 2.5155 -2.7562
8 6 5.3562 1.4974 -3.4119
9 6 4.6732 0.1572 -3.0404
10 8 4.1397 0.3607 -1.7222
11 6 2.0911 2.0702 1.1560
12 8 2.4406 3.2323 1.1488
13 6 1.7414 1.4032 2.4468
14 8 1.5104 0.2121 2.4712
15 7 1.6827 2.1244 3.5839
16 6 2.0057 3.5576 3.5788
17 6 0.8396 4.3282 4.2056
18 6 0.5417 3.7561 5.5935
19 6 0.1365 2.2859 5.4647
20 1 -0.7401 2.2050 4.8219
21 6 -0.1870 1.7321 6.8284
22 1 -0.0222 2.3351 7.7092
23 6 -0.6934 0.4556 6.9518
24 7 -0.4837 -0.2315 8.0534
25 14 -1.6776 -0.2979 5.5542
26 1 -2.1058 -1.6684 5.9330
27 1 -2.8747 0.5385 5.2846
28 1 -0.8341 -0.3629 4.3337
29 6 1.2947 1.4922 4.8521
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8934 -0.5138 -0.8901
34 1 1.8933 -0.5138 0.8899
35 1 1.8504 1.5928 -2.0799
36 1 2.2483 3.0870 -1.1984
37 1 3.5417 2.7273 -3.4152
38 1 4.9066 3.4330 -2.4862
39 1 6.3514 1.5662 -2.9728
40 1 5.3961 1.6316 -4.4929
41 1 5.4049 -0.6507 -3.0317
42 1 3.8707 -0.0677 -3.7428
43 1 2.9119 3.7300 4.1596
44 1 2.1596 3.8939 2.5534
45 1 1.1060 5.3813 4.2958
46 1 -0.0435 4.2286 3.5744
47 1 -0.2721 4.3182 6.0515
48 1 1.4326 3.8339 6.2167
49 1 0.0877 0.1300 8.7490
50 1 2.1428 1.4961 5.5368
51 1 0.9769 0.4662 4.6668
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118502959.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:45:30
Heat of formation + Delta-G solvation = -112.939787 kcal
Electronic energy + Delta-G solvation = -31604.182441 eV
Core-core repulsion = 27503.634224 eV
Total energy + Delta-G solvation = -4100.548217 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.25911 -40.61755 -39.69395 -38.82115 -37.15279 -35.28205 -33.60908 -33.23999
-32.49481 -32.04114 -30.65515 -28.03864 -26.75047 -26.46015 -24.73136 -23.53847
-23.37643 -22.56993 -22.13324 -20.92740 -20.15515 -19.72081 -18.27184 -18.10655
-17.65862 -17.40455 -17.19000 -16.75071 -16.09152 -15.86791 -15.72480 -15.55675
-15.32692 -15.23011 -14.93887 -14.69616 -14.45709 -14.28119 -14.18867 -13.92880
-13.73800 -13.50590 -13.25899 -13.11907 -12.81994 -12.76741 -12.64868 -12.52422
-12.38160 -12.25468 -12.15887 -12.02111 -12.01436 -11.72128 -11.64890 -11.45310
-11.16220 -11.09633 -10.70551 -10.38954 -10.00653 -9.79091 -9.60539 -8.79013
-6.38133 0.29160 1.23868 1.42180 1.48942 1.66010 2.07063 2.32446
2.42528 2.91143 2.93048 3.06814 3.59417 3.72797 3.96539 3.98450
4.06634 4.10032 4.14451 4.21182 4.23685 4.36719 4.41355 4.41859
4.50438 4.51956 4.58451 4.66081 4.67307 4.73789 4.77008 4.84805
4.89089 4.94439 4.96466 4.97812 5.05178 5.07457 5.12717 5.17354
5.23074 5.26680 5.38647 5.45185 5.52947 5.58669 5.90113 6.00970
6.07510 6.12628 6.28072 6.57348 6.65551 6.91231 7.32440 8.54525
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.018036 B = 0.003274 C = 0.002965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.071831 B = 8551.470823 C = 9439.822192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.089 3.911
3 N -0.564 5.564
4 C 0.100 3.900
5 C 0.064 3.936
6 H 0.058 0.942
7 C -0.141 4.141
8 C -0.150 4.150
9 C 0.040 3.960
10 O -0.399 6.399
11 C 0.514 3.486
12 O -0.521 6.521
13 C 0.487 3.513
14 O -0.542 6.542
15 N -0.576 5.576
16 C 0.049 3.951
17 C -0.123 4.123
18 C -0.101 4.101
19 C 0.017 3.983
20 H 0.017 0.983
21 C -0.613 4.613
22 H 0.031 0.969
23 C 0.001 3.999
24 N -0.919 5.919
25 Si 1.063 2.937
26 H -0.285 1.285
27 H -0.264 1.264
28 H -0.263 1.263
29 C 0.118 3.882
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.026 0.974
33 H 0.102 0.898
34 H 0.094 0.906
35 H 0.110 0.890
36 H 0.103 0.897
37 H 0.099 0.901
38 H 0.091 0.909
39 H 0.073 0.927
40 H 0.105 0.895
41 H 0.086 0.914
42 H 0.073 0.927
43 H 0.067 0.933
44 H 0.163 0.837
45 H 0.099 0.901
46 H 0.057 0.943
47 H 0.054 0.946
48 H 0.048 0.952
49 H 0.260 0.740
50 H 0.053 0.947
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.442 6.488 -28.932 31.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.032 4.032
3 N -0.295 5.295
4 C -0.021 4.021
5 C 0.005 3.995
6 H 0.076 0.924
7 C -0.179 4.179
8 C -0.188 4.188
9 C -0.036 4.036
10 O -0.319 6.319
11 C 0.298 3.702
12 O -0.401 6.401
13 C 0.270 3.730
14 O -0.421 6.421
15 N -0.308 5.308
16 C -0.071 4.071
17 C -0.161 4.161
18 C -0.138 4.138
19 C -0.003 4.003
20 H 0.035 0.965
21 C -0.650 4.650
22 H 0.049 0.951
23 C -0.202 4.202
24 N -0.553 5.553
25 Si 0.886 3.114
26 H -0.211 1.211
27 H -0.190 1.190
28 H -0.188 1.188
29 C -0.004 4.004
30 H 0.090 0.910
31 H 0.095 0.905
32 H 0.045 0.955
33 H 0.120 0.880
34 H 0.112 0.888
35 H 0.128 0.872
36 H 0.121 0.879
37 H 0.117 0.883
38 H 0.109 0.891
39 H 0.092 0.908
40 H 0.124 0.876
41 H 0.104 0.896
42 H 0.092 0.908
43 H 0.085 0.915
44 H 0.178 0.822
45 H 0.117 0.883
46 H 0.076 0.924
47 H 0.072 0.928
48 H 0.066 0.934
49 H 0.069 0.931
50 H 0.071 0.929
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 8.590 4.962 -29.198 30.837
hybrid contribution 0.898 1.109 1.691 2.212
sum 9.488 6.072 -27.507 29.724
Atomic orbital electron populations
1.22055 0.95325 1.02977 1.01037 1.22237 0.94768 0.80663 1.05568
1.47903 1.60552 1.15019 1.05986 1.22325 0.95095 1.00088 0.84592
1.23168 0.95074 0.82137 0.99089 0.92365 1.23107 1.00545 0.99230
0.95002 1.23253 0.99025 0.93554 1.02939 1.23602 0.97763 0.98490
0.83776 1.88487 1.84990 1.24200 1.34180 1.19944 0.78894 0.86072
0.85291 1.90217 1.48883 1.16157 1.84878 1.20500 0.79501 0.87064
0.85912 1.90616 1.50142 1.15491 1.85899 1.48461 1.63258 1.11704
1.07365 1.23436 0.97549 0.77489 1.08650 1.21900 0.98192 1.00343
0.95629 1.21435 1.00231 0.95383 0.96801 1.19173 0.92657 0.93896
0.94572 0.96525 1.21987 1.48879 1.01554 0.92625 0.95112 1.26829
0.96556 0.94669 1.02100 1.70958 1.36570 1.37928 1.09833 0.83755
0.77193 0.76012 0.74463 1.21071 1.18952 1.18808 1.22212 0.98399
0.97636 0.82175 0.91049 0.90459 0.95499 0.87966 0.88818 0.87151
0.87866 0.88270 0.89063 0.90810 0.87630 0.89584 0.90844 0.91485
0.82151 0.88282 0.92379 0.92762 0.93357 0.93103 0.92908 0.92012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.77 9.80 71.98 0.71 -3.06 16
2 C 0.09 2.23 5.51 86.38 0.48 2.71 16
3 N -0.56 -14.12 2.47 -823.39 -2.04 -16.16 16
4 C 0.10 1.73 4.94 86.38 0.43 2.16 16
5 C 0.06 1.09 3.77 31.06 0.12 1.21 16
6 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
7 C -0.14 -1.36 6.54 31.85 0.21 -1.15 16
8 C -0.15 -1.27 7.16 32.05 0.23 -1.04 16
9 C 0.04 0.47 7.78 72.65 0.56 1.03 16
10 O -0.40 -7.77 10.11 -148.98 -1.51 -9.27 16
11 C 0.51 15.99 7.58 87.27 0.66 16.65 16
12 O -0.52 -15.88 12.58 -3.25 -0.04 -15.92 16
13 C 0.49 18.61 7.29 87.27 0.64 19.25 16
14 O -0.54 -22.94 11.70 -3.26 -0.04 -22.98 16
15 N -0.58 -22.79 2.97 -820.49 -2.44 -25.22 16
16 C 0.05 1.59 6.24 86.36 0.54 2.13 16
17 C -0.12 -3.89 6.08 30.67 0.19 -3.70 16
18 C -0.10 -4.03 5.11 30.62 0.16 -3.87 16
19 C 0.02 0.81 1.86 -11.46 -0.02 0.79 16
20 H 0.02 0.83 6.67 -2.39 -0.02 0.81 16
21 C -0.61 -35.17 8.72 25.60 0.22 -34.94 16
22 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16
23 C 0.00 0.04 5.24 84.66 0.44 0.48 16
24 N -0.92 -57.94 13.70 21.45 0.29 -57.65 16
25 Si 1.06 53.17 26.72 68.60 1.83 55.00 16
26 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16
27 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16
28 H -0.26 -12.94 6.18 99.48 0.61 -12.32 16
29 C 0.12 5.52 5.43 86.36 0.47 5.99 16
30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16
31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
32 H 0.03 0.81 7.18 -2.39 -0.02 0.79 16
33 H 0.10 2.10 7.34 -2.38 -0.02 2.08 16
34 H 0.09 3.00 5.18 -5.44 -0.03 2.97 16
35 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16
36 H 0.10 1.71 7.38 -2.39 -0.02 1.69 16
37 H 0.10 0.61 7.85 -2.39 -0.02 0.59 16
38 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16
39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16
41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
43 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16
44 H 0.16 4.96 3.76 -83.33 -0.31 4.65 16
45 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16
46 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
48 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
49 H 0.26 16.40 8.73 -92.71 -0.81 15.59 16
50 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16
51 H 0.06 3.19 4.79 -2.39 -0.01 3.18 16
Total: -1.00 -71.21 388.62 2.55 -68.66
By element:
Atomic # 1 Polarization: 18.45 SS G_CDS: 0.46 Total: 18.92 kcal
Atomic # 6 Polarization: -1.40 SS G_CDS: 6.02 Total: 4.62 kcal
Atomic # 7 Polarization: -94.85 SS G_CDS: -4.18 Total: -99.03 kcal
Atomic # 8 Polarization: -46.59 SS G_CDS: -1.59 Total: -48.17 kcal
Atomic # 14 Polarization: 53.17 SS G_CDS: 1.83 Total: 55.00 kcal
Total: -71.21 2.55 -68.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118502959.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.282 kcal
(2) G-P(sol) polarization free energy of solvation -71.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds