Wall clock time and date at job start Tue Mar 31 2020 20:45:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46495 * 109.47217 * 2 1
4 4 C 1.46501 * 120.00272 * 265.83522 * 3 2 1
5 5 C 1.52992 * 109.47449 * 270.00103 * 4 3 2
6 6 H 1.09000 * 109.87095 * 59.29972 * 5 4 3
7 7 C 1.54104 * 109.88017 * 180.30722 * 5 4 3
8 8 C 1.54812 * 104.19029 * 121.45568 * 7 5 4
9 9 C 1.55002 * 102.08822 * 20.87887 * 8 7 5
10 10 O 1.43747 * 109.88175 * 298.29370 * 5 4 3
11 11 C 1.34780 * 119.99944 * 85.84344 * 3 2 1
12 12 O 1.21347 * 120.00047 * 185.01248 * 11 3 2
13 13 C 1.49453 * 119.99665 * 5.00781 * 11 3 2
14 14 O 1.21346 * 119.99980 * 274.49315 * 13 11 3
15 15 N 1.34771 * 120.00084 * 94.50314 * 13 11 3
16 16 C 1.46930 * 120.62861 * 354.95468 * 15 13 11
17 17 C 1.53188 * 108.78039 * 233.63314 * 16 15 13
18 18 C 1.53042 * 109.34030 * 305.35350 * 17 16 15
19 19 C 1.53112 * 109.50210 * 61.34340 * 18 17 16
20 20 H 1.08999 * 109.48553 * 58.61697 * 19 18 17
21 21 C 1.50704 * 109.51171 * 178.68273 * 19 18 17
22 22 H 1.07996 * 120.00154 * 359.87688 * 21 19 18
23 23 C 1.37882 * 119.99609 * 179.87073 * 21 19 18
24 24 N 1.31512 * 120.00033 * 0.02562 * 23 21 19
25 25 Si 1.86799 * 119.99852 * 180.02562 * 23 21 19
26 26 H 1.48507 * 109.46878 * 0.02562 * 25 23 21
27 27 H 1.48505 * 109.46974 * 119.99888 * 25 23 21
28 28 H 1.48495 * 109.47392 * 240.00259 * 25 23 21
29 29 C 1.46928 * 120.63546 * 174.98671 * 15 13 11
30 30 H 1.08999 * 109.47279 * 300.00042 * 1 2 3
31 31 H 1.09004 * 109.47085 * 59.99416 * 1 2 3
32 32 H 1.08998 * 109.47508 * 179.97438 * 1 2 3
33 33 H 1.09006 * 109.46762 * 240.00370 * 2 1 3
34 34 H 1.08995 * 109.47138 * 120.00382 * 2 1 3
35 35 H 1.08999 * 109.46970 * 30.00987 * 4 3 2
36 36 H 1.09001 * 109.46718 * 150.00254 * 4 3 2
37 37 H 1.09008 * 110.48515 * 240.13477 * 7 5 4
38 38 H 1.09000 * 110.48632 * 2.77732 * 7 5 4
39 39 H 1.08997 * 110.90591 * 139.07493 * 8 7 5
40 40 H 1.08998 * 110.90668 * 262.64805 * 8 7 5
41 41 H 1.09003 * 110.61542 * 81.48366 * 9 8 7
42 42 H 1.09000 * 110.61185 * 204.47270 * 9 8 7
43 43 H 1.09004 * 109.58162 * 113.84745 * 16 15 13
44 44 H 1.09000 * 109.58933 * 353.42405 * 16 15 13
45 45 H 1.09007 * 109.49564 * 65.31903 * 17 16 15
46 46 H 1.08996 * 109.50115 * 185.38305 * 17 16 15
47 47 H 1.09002 * 109.45860 * 181.39574 * 18 17 16
48 48 H 1.08997 * 109.45982 * 301.35748 * 18 17 16
49 49 H 0.97000 * 119.99649 * 179.97438 * 24 23 21
50 50 H 1.08999 * 109.58606 * 246.15581 * 29 15 13
51 51 H 1.09006 * 109.58207 * 6.57412 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3494 2.0411 -1.2654
5 6 3.8209 1.7913 -1.6012
6 1 4.0056 0.7202 -1.6832
7 6 4.1814 2.4883 -2.9275
8 6 5.3315 3.4530 -2.5489
9 6 5.8574 2.8297 -1.2308
10 8 4.6584 2.3546 -0.5776
11 6 2.1632 2.0447 1.1642
12 8 2.4800 3.2161 1.1595
13 6 1.9334 1.3378 2.4607
14 8 0.8117 1.2549 2.9162
15 7 2.9721 0.7925 3.1242
16 6 4.3177 0.7877 2.5343
17 6 4.8506 -0.6485 2.5332
18 6 4.7858 -1.2143 3.9537
19 6 3.3303 -1.2387 4.4282
20 1 2.7357 -1.8466 3.7463
21 6 3.2626 -1.8257 5.8146
22 1 4.1665 -2.1512 6.3079
23 6 2.0466 -1.9472 6.4531
24 7 0.9459 -1.5512 5.8522
25 14 1.9627 -2.6742 8.1718
26 1 3.3301 -3.0384 8.6224
27 1 1.3847 -1.6738 9.1047
28 1 1.1070 -3.8876 8.1548
29 6 2.7802 0.1908 4.4509
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.8932 -0.5138 -0.8901
34 1 1.8933 -0.5139 0.8899
35 1 1.7217 1.6383 -2.0603
36 1 2.1748 3.1130 -1.1725
37 1 4.5219 1.7582 -3.6618
38 1 3.3264 3.0456 -3.3103
39 1 6.1066 3.4538 -3.3152
40 1 4.9536 4.4612 -2.3793
41 1 6.5321 1.9998 -1.4411
42 1 6.3540 3.5843 -0.6208
43 1 4.9781 1.4220 3.1256
44 1 4.2695 1.1603 1.5111
45 1 4.2417 -1.2620 1.8691
46 1 5.8841 -0.6529 2.1867
47 1 5.1876 -2.2275 3.9597
48 1 5.3749 -0.5862 4.6219
49 1 0.0904 -1.6370 6.3013
50 1 3.3152 0.7765 5.1985
51 1 1.7174 0.1697 4.6922
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118502960.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:45:34
Heat of formation + Delta-G solvation = -117.314239 kcal
Electronic energy + Delta-G solvation = -32252.339904 eV
Core-core repulsion = 28151.601997 eV
Total energy + Delta-G solvation = -4100.737907 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.59495 -39.46468 -38.20598 -36.61864 -35.96715 -33.36300 -32.41888 -31.79199
-31.58644 -29.86991 -29.53776 -26.69035 -25.12867 -24.86339 -23.53456 -22.66980
-21.84199 -21.63150 -21.02641 -19.31863 -18.33481 -17.28327 -17.02409 -16.38701
-16.26401 -16.01723 -15.56880 -15.39904 -14.95358 -14.54690 -14.05565 -14.01745
-13.83335 -13.73260 -13.64095 -13.31852 -12.87342 -12.75398 -12.63872 -12.57497
-12.25392 -12.18539 -12.00606 -11.92616 -11.81146 -11.50606 -11.28913 -11.11508
-11.01061 -10.98487 -10.89128 -10.69050 -10.47740 -10.33792 -10.24468 -9.90703
-9.85840 -9.17284 -9.12948 -8.80223 -8.63822 -8.44808 -7.81866 -6.00775
-4.09294 2.53876 2.65742 3.19852 3.30283 3.38976 3.41769 3.69181
3.84524 4.30231 4.42569 4.48131 4.60734 4.66522 4.84329 4.94259
5.02295 5.09539 5.28530 5.29387 5.30289 5.39905 5.43034 5.46072
5.48192 5.53521 5.54395 5.63039 5.74942 5.77800 5.80745 5.85888
5.96191 6.08919 6.21140 6.32411 6.36405 6.49479 6.58952 6.65523
6.81333 6.84117 6.95705 7.08956 7.20986 7.29217 7.60009 7.83682
7.95342 8.12702 8.16220 8.35809 8.62861 8.94765 9.56502 11.04491
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.018008 B = 0.003488 C = 0.003188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.511500 B = 8025.271169 C = 8780.022874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.103 3.897
3 N -0.601 5.601
4 C 0.116 3.884
5 C 0.059 3.941
6 H 0.069 0.931
7 C -0.148 4.148
8 C -0.153 4.153
9 C 0.046 3.954
10 O -0.355 6.355
11 C 0.526 3.474
12 O -0.509 6.509
13 C 0.505 3.495
14 O -0.514 6.514
15 N -0.586 5.586
16 C 0.104 3.896
17 C -0.128 4.128
18 C -0.112 4.112
19 C 0.042 3.958
20 H 0.030 0.970
21 C -0.520 4.520
22 H 0.059 0.941
23 C 0.063 3.937
24 N -0.880 5.880
25 Si 0.892 3.108
26 H -0.273 1.273
27 H -0.284 1.284
28 H -0.284 1.284
29 C 0.110 3.890
30 H 0.073 0.927
31 H 0.053 0.947
32 H 0.068 0.932
33 H 0.081 0.919
34 H 0.083 0.917
35 H 0.090 0.910
36 H 0.091 0.909
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.077 0.923
40 H 0.077 0.923
41 H 0.058 0.942
42 H 0.091 0.909
43 H 0.063 0.937
44 H 0.081 0.919
45 H 0.058 0.942
46 H 0.060 0.940
47 H 0.052 0.948
48 H 0.050 0.950
49 H 0.263 0.737
50 H 0.046 0.954
51 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.258 5.249 -20.204 22.101
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.020 4.020
3 N -0.337 5.337
4 C -0.007 4.007
5 C -0.001 4.001
6 H 0.087 0.913
7 C -0.186 4.186
8 C -0.191 4.191
9 C -0.031 4.031
10 O -0.273 6.273
11 C 0.309 3.691
12 O -0.382 6.382
13 C 0.286 3.714
14 O -0.389 6.389
15 N -0.319 5.319
16 C -0.019 4.019
17 C -0.167 4.167
18 C -0.150 4.150
19 C 0.023 3.977
20 H 0.048 0.952
21 C -0.559 4.559
22 H 0.078 0.922
23 C -0.140 4.140
24 N -0.517 5.517
25 Si 0.720 3.280
26 H -0.198 1.198
27 H -0.210 1.210
28 H -0.210 1.210
29 C -0.010 4.010
30 H 0.092 0.908
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.108 0.892
36 H 0.110 0.890
37 H 0.095 0.905
38 H 0.097 0.903
39 H 0.096 0.904
40 H 0.096 0.904
41 H 0.076 0.924
42 H 0.109 0.891
43 H 0.082 0.918
44 H 0.099 0.901
45 H 0.077 0.923
46 H 0.079 0.921
47 H 0.071 0.929
48 H 0.069 0.931
49 H 0.073 0.927
50 H 0.065 0.935
51 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 6.564 5.869 -19.661 21.542
hybrid contribution 0.032 -0.440 0.611 0.754
sum 6.596 5.429 -19.050 20.877
Atomic orbital electron populations
1.22237 0.95111 1.02793 1.03055 1.21653 0.95255 0.81502 1.03546
1.47914 1.65616 1.14537 1.05597 1.21730 0.93347 1.00117 0.85526
1.23207 0.91840 0.97580 0.87446 0.91276 1.22923 0.99410 0.98961
0.97311 1.23109 0.98013 0.99953 0.98043 1.23561 0.88534 0.97902
0.93128 1.89079 1.29245 1.78923 1.30083 1.20613 0.76170 0.87374
0.84954 1.90731 1.45308 1.15486 1.86673 1.20049 0.85976 0.79780
0.85560 1.90800 1.22135 1.57738 1.68213 1.48552 1.07318 1.55302
1.20756 1.21771 0.83824 0.97710 0.98599 1.21905 0.99745 0.95446
0.99566 1.21662 1.00391 0.99479 0.93421 1.18973 0.90012 0.91844
0.96860 0.95210 1.21108 0.93176 1.41231 1.00347 0.92245 1.25054
0.95824 0.95204 0.97934 1.69885 0.98167 1.46278 1.37369 0.86537
0.78044 0.78856 0.84575 1.19795 1.20973 1.21030 1.22441 1.06399
0.94256 0.77861 0.90792 0.92798 0.91267 0.90097 0.89872 0.89206
0.89031 0.90524 0.90261 0.90421 0.90427 0.92376 0.89082 0.91826
0.90058 0.92321 0.92123 0.92898 0.93084 0.92679 0.93533 0.85766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.26 10.21 37.16 0.38 -1.88 16
2 C 0.10 1.34 5.95 -4.05 -0.02 1.31 16
3 N -0.60 -8.61 2.45 -174.20 -0.43 -9.04 16
4 C 0.12 1.27 4.95 -4.04 -0.02 1.25 16
5 C 0.06 0.58 3.68 -26.16 -0.10 0.48 16
6 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
7 C -0.15 -1.03 6.64 -25.20 -0.17 -1.20 16
8 C -0.15 -1.11 7.16 -24.72 -0.18 -1.29 16
9 C 0.05 0.42 7.72 38.21 0.29 0.71 16
10 O -0.35 -4.53 8.96 -36.24 -0.32 -4.85 16
11 C 0.53 9.86 4.93 -11.58 -0.06 9.80 16
12 O -0.51 -10.60 16.16 4.49 0.07 -10.52 16
13 C 0.51 10.97 5.67 -11.59 -0.07 10.91 16
14 O -0.51 -12.85 15.42 5.50 0.08 -12.77 16
15 N -0.59 -12.39 2.97 -173.27 -0.52 -12.90 16
16 C 0.10 1.83 6.32 -3.71 -0.02 1.81 16
17 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16
18 C -0.11 -2.20 5.11 -26.65 -0.14 -2.34 16
19 C 0.04 1.02 2.25 -91.62 -0.21 0.82 16
20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
21 C -0.52 -13.87 8.57 -34.44 -0.29 -14.17 16
22 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16
24 N -0.88 -25.21 11.39 55.43 0.63 -24.58 16
25 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16
26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
29 C 0.11 2.68 5.41 -3.71 -0.02 2.66 16
30 H 0.07 1.24 7.02 -51.93 -0.36 0.87 16
31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
33 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16
34 H 0.08 1.30 6.95 -51.93 -0.36 0.94 16
35 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16
36 H 0.09 1.15 7.36 -51.93 -0.38 0.76 16
37 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16
38 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16
39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
44 H 0.08 1.36 5.16 -51.93 -0.27 1.09 16
45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
50 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16
51 H 0.12 3.50 5.11 -51.93 -0.27 3.24 16
LS Contribution 397.78 15.07 5.99 5.99
Total: -1.00 -32.84 397.78 -9.13 -41.98
By element:
Atomic # 1 Polarization: 11.16 SS G_CDS: -8.76 Total: 2.40 kcal
Atomic # 6 Polarization: 9.10 SS G_CDS: -0.87 Total: 8.23 kcal
Atomic # 7 Polarization: -46.21 SS G_CDS: -0.31 Total: -46.52 kcal
Atomic # 8 Polarization: -27.98 SS G_CDS: -0.17 Total: -28.14 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -32.84 -9.13 -41.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118502960.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.339 kcal
(2) G-P(sol) polarization free energy of solvation -32.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds