Wall clock time and date at job start Tue Mar 31 2020 20:45:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46495 * 109.47217 * 2 1
4 4 C 1.46501 * 120.00272 * 265.83522 * 3 2 1
5 5 C 1.52992 * 109.47449 * 270.00103 * 4 3 2
6 6 H 1.09000 * 109.87095 * 59.29972 * 5 4 3
7 7 C 1.54104 * 109.88017 * 180.30722 * 5 4 3
8 8 C 1.54812 * 104.19029 * 121.45568 * 7 5 4
9 9 C 1.55002 * 102.08822 * 20.87887 * 8 7 5
10 10 O 1.43747 * 109.88175 * 298.29370 * 5 4 3
11 11 C 1.34780 * 119.99944 * 85.84344 * 3 2 1
12 12 O 1.21347 * 120.00047 * 185.01248 * 11 3 2
13 13 C 1.49453 * 119.99665 * 5.00781 * 11 3 2
14 14 O 1.21346 * 119.99980 * 274.49315 * 13 11 3
15 15 N 1.34771 * 120.00084 * 94.50314 * 13 11 3
16 16 C 1.46930 * 120.62861 * 354.95468 * 15 13 11
17 17 C 1.53188 * 108.78039 * 233.63314 * 16 15 13
18 18 C 1.53042 * 109.34030 * 305.35350 * 17 16 15
19 19 C 1.53112 * 109.50210 * 61.34340 * 18 17 16
20 20 H 1.08999 * 109.48553 * 58.61697 * 19 18 17
21 21 C 1.50704 * 109.51171 * 178.68273 * 19 18 17
22 22 H 1.07996 * 120.00154 * 359.87688 * 21 19 18
23 23 C 1.37882 * 119.99609 * 179.87073 * 21 19 18
24 24 N 1.31512 * 120.00033 * 0.02562 * 23 21 19
25 25 Si 1.86799 * 119.99852 * 180.02562 * 23 21 19
26 26 H 1.48507 * 109.46878 * 0.02562 * 25 23 21
27 27 H 1.48505 * 109.46974 * 119.99888 * 25 23 21
28 28 H 1.48495 * 109.47392 * 240.00259 * 25 23 21
29 29 C 1.46928 * 120.63546 * 174.98671 * 15 13 11
30 30 H 1.08999 * 109.47279 * 300.00042 * 1 2 3
31 31 H 1.09004 * 109.47085 * 59.99416 * 1 2 3
32 32 H 1.08998 * 109.47508 * 179.97438 * 1 2 3
33 33 H 1.09006 * 109.46762 * 240.00370 * 2 1 3
34 34 H 1.08995 * 109.47138 * 120.00382 * 2 1 3
35 35 H 1.08999 * 109.46970 * 30.00987 * 4 3 2
36 36 H 1.09001 * 109.46718 * 150.00254 * 4 3 2
37 37 H 1.09008 * 110.48515 * 240.13477 * 7 5 4
38 38 H 1.09000 * 110.48632 * 2.77732 * 7 5 4
39 39 H 1.08997 * 110.90591 * 139.07493 * 8 7 5
40 40 H 1.08998 * 110.90668 * 262.64805 * 8 7 5
41 41 H 1.09003 * 110.61542 * 81.48366 * 9 8 7
42 42 H 1.09000 * 110.61185 * 204.47270 * 9 8 7
43 43 H 1.09004 * 109.58162 * 113.84745 * 16 15 13
44 44 H 1.09000 * 109.58933 * 353.42405 * 16 15 13
45 45 H 1.09007 * 109.49564 * 65.31903 * 17 16 15
46 46 H 1.08996 * 109.50115 * 185.38305 * 17 16 15
47 47 H 1.09002 * 109.45860 * 181.39574 * 18 17 16
48 48 H 1.08997 * 109.45982 * 301.35748 * 18 17 16
49 49 H 0.97000 * 119.99649 * 179.97438 * 24 23 21
50 50 H 1.08999 * 109.58606 * 246.15581 * 29 15 13
51 51 H 1.09006 * 109.58207 * 6.57412 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3494 2.0411 -1.2654
5 6 3.8209 1.7913 -1.6012
6 1 4.0056 0.7202 -1.6832
7 6 4.1814 2.4883 -2.9275
8 6 5.3315 3.4530 -2.5489
9 6 5.8574 2.8297 -1.2308
10 8 4.6584 2.3546 -0.5776
11 6 2.1632 2.0447 1.1642
12 8 2.4800 3.2161 1.1595
13 6 1.9334 1.3378 2.4607
14 8 0.8117 1.2549 2.9162
15 7 2.9721 0.7925 3.1242
16 6 4.3177 0.7877 2.5343
17 6 4.8506 -0.6485 2.5332
18 6 4.7858 -1.2143 3.9537
19 6 3.3303 -1.2387 4.4282
20 1 2.7357 -1.8466 3.7463
21 6 3.2626 -1.8257 5.8146
22 1 4.1665 -2.1512 6.3079
23 6 2.0466 -1.9472 6.4531
24 7 0.9459 -1.5512 5.8522
25 14 1.9627 -2.6742 8.1718
26 1 3.3301 -3.0384 8.6224
27 1 1.3847 -1.6738 9.1047
28 1 1.1070 -3.8876 8.1548
29 6 2.7802 0.1908 4.4509
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.8932 -0.5138 -0.8901
34 1 1.8933 -0.5139 0.8899
35 1 1.7217 1.6383 -2.0603
36 1 2.1748 3.1130 -1.1725
37 1 4.5219 1.7582 -3.6618
38 1 3.3264 3.0456 -3.3103
39 1 6.1066 3.4538 -3.3152
40 1 4.9536 4.4612 -2.3793
41 1 6.5321 1.9998 -1.4411
42 1 6.3540 3.5843 -0.6208
43 1 4.9781 1.4220 3.1256
44 1 4.2695 1.1603 1.5111
45 1 4.2417 -1.2620 1.8691
46 1 5.8841 -0.6529 2.1867
47 1 5.1876 -2.2275 3.9597
48 1 5.3749 -0.5862 4.6219
49 1 0.0904 -1.6370 6.3013
50 1 3.3152 0.7765 5.1985
51 1 1.7174 0.1697 4.6922
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118502960.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:45:33
Heat of formation + Delta-G solvation = -138.381697 kcal
Electronic energy + Delta-G solvation = -32253.253457 eV
Core-core repulsion = 28151.601997 eV
Total energy + Delta-G solvation = -4101.651461 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.03742 -40.45814 -39.60886 -38.36503 -37.22242 -35.31767 -33.53805 -33.13472
-32.43356 -31.65692 -30.60967 -28.03642 -26.94104 -26.20470 -24.77916 -23.74440
-23.48205 -22.60406 -21.83644 -20.98098 -19.73596 -18.86037 -18.32971 -18.11856
-17.58019 -17.09555 -16.69401 -16.52226 -16.29484 -16.09310 -15.65923 -15.41790
-15.22232 -14.91219 -14.83202 -14.53832 -14.40486 -14.35652 -14.01521 -13.85608
-13.60677 -13.44823 -13.18742 -12.94407 -12.91171 -12.72382 -12.51407 -12.48016
-12.31296 -12.24976 -12.21020 -11.98862 -11.94006 -11.82016 -11.65929 -11.53331
-11.08786 -10.95948 -10.63922 -10.55420 -10.46793 -9.81091 -9.59958 -8.10303
-6.26594 1.07335 1.14647 1.41057 1.43336 1.54518 1.62358 2.33707
2.44144 3.00503 3.17636 3.22143 3.71040 3.81972 3.91539 3.98681
4.08121 4.09805 4.17311 4.19867 4.28428 4.32418 4.45485 4.46471
4.53153 4.62601 4.68847 4.71730 4.75569 4.77847 4.79115 4.87840
4.90643 5.00736 5.02241 5.05863 5.16483 5.19302 5.22684 5.26081
5.28854 5.30143 5.42522 5.45371 5.59305 5.85877 5.95285 5.98225
6.13254 6.30693 6.35993 6.75971 6.83433 6.92476 7.43401 8.93307
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.018008 B = 0.003488 C = 0.003188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.511500 B = 8025.271169 C = 8780.022874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.101 3.899
3 N -0.585 5.585
4 C 0.110 3.890
5 C 0.055 3.945
6 H 0.082 0.918
7 C -0.140 4.140
8 C -0.150 4.150
9 C 0.038 3.962
10 O -0.394 6.394
11 C 0.532 3.468
12 O -0.537 6.537
13 C 0.496 3.504
14 O -0.560 6.560
15 N -0.586 5.586
16 C 0.103 3.897
17 C -0.116 4.116
18 C -0.106 4.106
19 C 0.043 3.957
20 H -0.003 1.003
21 C -0.533 4.533
22 H 0.063 0.937
23 C 0.011 3.989
24 N -0.913 5.913
25 Si 0.956 3.044
26 H -0.261 1.261
27 H -0.286 1.286
28 H -0.281 1.281
29 C 0.122 3.878
30 H 0.027 0.973
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.132 0.868
34 H 0.051 0.949
35 H 0.132 0.868
36 H 0.073 0.927
37 H 0.100 0.900
38 H 0.088 0.912
39 H 0.099 0.901
40 H 0.066 0.934
41 H 0.072 0.928
42 H 0.084 0.916
43 H 0.070 0.930
44 H 0.094 0.906
45 H 0.060 0.940
46 H 0.102 0.898
47 H 0.061 0.939
48 H 0.054 0.946
49 H 0.260 0.740
50 H 0.038 0.962
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.403 4.396 -23.108 25.332
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.021 4.021
3 N -0.318 5.318
4 C -0.011 4.011
5 C -0.004 4.004
6 H 0.100 0.900
7 C -0.178 4.178
8 C -0.188 4.188
9 C -0.038 4.038
10 O -0.313 6.313
11 C 0.315 3.685
12 O -0.413 6.413
13 C 0.279 3.721
14 O -0.439 6.439
15 N -0.319 5.319
16 C -0.018 4.018
17 C -0.154 4.154
18 C -0.143 4.143
19 C 0.024 3.976
20 H 0.016 0.984
21 C -0.572 4.572
22 H 0.082 0.918
23 C -0.188 4.188
24 N -0.551 5.551
25 Si 0.782 3.218
26 H -0.185 1.185
27 H -0.212 1.212
28 H -0.207 1.207
29 C 0.001 3.999
30 H 0.046 0.954
31 H 0.100 0.900
32 H 0.099 0.901
33 H 0.149 0.851
34 H 0.070 0.930
35 H 0.150 0.850
36 H 0.092 0.908
37 H 0.118 0.882
38 H 0.106 0.894
39 H 0.118 0.882
40 H 0.085 0.915
41 H 0.090 0.910
42 H 0.102 0.898
43 H 0.088 0.912
44 H 0.112 0.888
45 H 0.079 0.921
46 H 0.121 0.879
47 H 0.080 0.920
48 H 0.073 0.927
49 H 0.069 0.931
50 H 0.056 0.944
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 8.756 4.993 -22.622 24.766
hybrid contribution -0.642 -0.178 1.477 1.620
sum 8.114 4.815 -21.145 23.155
Atomic orbital electron populations
1.22192 0.95179 1.03304 1.02087 1.21827 0.95173 0.80685 1.04402
1.47945 1.63661 1.14844 1.05383 1.22146 0.95503 0.99105 0.84388
1.23349 0.90273 0.98503 0.88288 0.90035 1.22920 0.99565 0.99187
0.96101 1.23095 0.98742 0.99318 0.97609 1.23722 0.87890 0.98396
0.93800 1.89041 1.30714 1.79423 1.32148 1.19957 0.76757 0.86827
0.84999 1.90716 1.47401 1.16263 1.86913 1.20767 0.85304 0.79246
0.86786 1.90764 1.23957 1.59499 1.69634 1.48565 1.08944 1.54669
1.19710 1.22002 0.81782 0.98973 0.99077 1.21841 1.02181 0.93980
0.97402 1.21551 0.96795 1.00461 0.95518 1.18888 0.92698 0.90647
0.95344 0.98445 1.21519 0.93240 1.40909 1.01521 0.91846 1.25864
0.95566 0.95686 1.01696 1.70072 0.98547 1.47585 1.38924 0.85530
0.78451 0.77884 0.79941 1.18465 1.21199 1.20727 1.21946 1.03614
0.94820 0.79550 0.95398 0.89975 0.90111 0.85052 0.93021 0.85020
0.90804 0.88173 0.89376 0.88233 0.91530 0.90974 0.89805 0.91172
0.88756 0.92119 0.87936 0.92015 0.92738 0.93119 0.94410 0.89955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.30 10.21 71.98 0.74 -3.56 16
2 C 0.10 2.46 5.95 86.38 0.51 2.98 16
3 N -0.58 -16.03 2.45 -823.42 -2.02 -18.05 16
4 C 0.11 2.10 4.95 86.38 0.43 2.53 16
5 C 0.05 0.89 3.68 30.97 0.11 1.01 16
6 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
7 C -0.14 -1.39 6.64 31.59 0.21 -1.18 16
8 C -0.15 -1.74 7.16 31.90 0.23 -1.51 16
9 C 0.04 0.62 7.72 72.67 0.56 1.18 16
10 O -0.39 -9.28 8.96 -148.02 -1.33 -10.61 16
11 C 0.53 20.30 4.93 87.27 0.43 20.73 16
12 O -0.54 -22.82 16.16 -2.28 -0.04 -22.86 16
13 C 0.50 22.66 5.67 87.27 0.50 23.15 16
14 O -0.56 -30.21 15.42 -3.23 -0.05 -30.26 16
15 N -0.59 -25.71 2.97 -820.48 -2.44 -28.15 16
16 C 0.10 3.55 6.32 86.36 0.55 4.10 16
17 C -0.12 -3.56 6.08 30.67 0.19 -3.38 16
18 C -0.11 -4.05 5.11 30.65 0.16 -3.89 16
19 C 0.04 2.16 2.25 -11.44 -0.03 2.14 16
20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16
21 C -0.53 -29.02 8.57 25.60 0.22 -28.81 16
22 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16
23 C 0.01 0.64 5.30 84.66 0.45 1.09 16
24 N -0.91 -54.88 11.39 21.45 0.24 -54.63 16
25 Si 0.96 44.10 29.54 68.60 2.03 46.13 16
26 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16
27 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16
28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
29 C 0.12 6.27 5.41 86.36 0.47 6.74 16
30 H 0.03 0.96 7.02 -2.39 -0.02 0.94 16
31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.13 1.92 8.04 -2.38 -0.02 1.90 16
34 H 0.05 1.62 6.95 -2.39 -0.02 1.60 16
35 H 0.13 1.42 8.07 -2.39 -0.02 1.40 16
36 H 0.07 1.74 7.36 -2.39 -0.02 1.72 16
37 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16
38 H 0.09 0.74 7.70 -2.39 -0.02 0.72 16
39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16
40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
43 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16
44 H 0.09 3.05 5.16 -2.39 -0.01 3.04 16
45 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
46 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
48 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
49 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16
50 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
51 H 0.08 4.99 5.11 -2.38 -0.01 4.97 16
Total: -1.00 -77.94 397.78 3.02 -74.92
By element:
Atomic # 1 Polarization: 19.28 SS G_CDS: 0.90 Total: 20.19 kcal
Atomic # 6 Polarization: 17.60 SS G_CDS: 5.71 Total: 23.32 kcal
Atomic # 7 Polarization: -96.62 SS G_CDS: -4.21 Total: -100.83 kcal
Atomic # 8 Polarization: -62.31 SS G_CDS: -1.41 Total: -63.72 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Total: -77.94 3.02 -74.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118502960.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.460 kcal
(2) G-P(sol) polarization free energy of solvation -77.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds