Wall clock time and date at job start Tue Mar 31 2020 21:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46947 * 2 1 4 4 C 1.37096 * 119.99749 * 272.69804 * 3 2 1 5 5 H 1.07999 * 119.99269 * 179.09554 * 4 3 2 6 6 C 1.38952 * 120.00465 * 359.09328 * 4 3 2 7 7 N 1.31411 * 119.99604 * 29.42757 * 6 4 3 8 8 Si 1.86797 * 120.00193 * 209.42533 * 6 4 3 9 9 H 1.48492 * 109.47038 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.46914 * 210.00164 * 8 6 4 11 11 H 1.48503 * 109.47129 * 329.99939 * 8 6 4 12 12 C 1.34775 * 119.99755 * 92.70209 * 3 2 1 13 13 O 1.21292 * 119.99932 * 184.75405 * 12 3 2 14 14 C 1.50706 * 120.00070 * 4.75424 * 12 3 2 15 15 C 1.53775 * 116.86550 * 285.92885 * 14 12 3 16 16 C 1.53718 * 87.34559 * 215.89466 * 15 14 12 17 17 C 1.53605 * 87.32694 * 25.38365 * 16 15 14 18 18 H 1.09004 * 116.55890 * 92.96649 * 17 16 15 19 19 C 1.53609 * 113.81878 * 230.23724 * 17 16 15 20 20 N 1.46657 * 107.98794 * 77.15044 * 19 17 16 21 21 C 1.34776 * 125.33278 * 178.84554 * 20 19 17 22 22 O 1.21507 * 120.00132 * 180.02562 * 21 20 19 23 23 O 1.34640 * 119.99808 * 0.02906 * 21 20 19 24 24 C 1.45199 * 116.99934 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.47206 * 59.99864 * 24 23 21 26 26 C 1.53003 * 109.46809 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.47027 * 299.99660 * 24 23 21 28 28 C 1.46741 * 109.33915 * 358.84795 * 20 19 17 29 29 H 1.09006 * 109.46847 * 299.99567 * 1 2 3 30 30 H 1.08995 * 109.47389 * 59.99968 * 1 2 3 31 31 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46847 * 240.00433 * 2 1 3 33 33 H 1.08995 * 109.47389 * 120.00032 * 2 1 3 34 34 H 0.96999 * 119.99618 * 179.97438 * 7 6 4 35 35 H 1.08999 * 113.57093 * 330.51045 * 15 14 12 36 36 H 1.09000 * 113.56907 * 101.28071 * 15 14 12 37 37 H 1.09007 * 113.57346 * 270.77751 * 16 15 14 38 38 H 1.08994 * 113.57348 * 140.00034 * 16 15 14 39 39 H 1.08996 * 109.76558 * 196.78265 * 19 17 16 40 40 H 1.08997 * 109.76786 * 317.51586 * 19 17 16 41 41 H 1.08997 * 109.47410 * 60.00396 * 25 24 23 42 42 H 1.09006 * 109.46790 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.46898 * 299.99662 * 25 24 23 44 44 H 1.08992 * 109.47391 * 59.99876 * 26 24 23 45 45 H 1.09001 * 109.46930 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47031 * 299.99617 * 26 24 23 47 47 H 1.08996 * 109.47359 * 59.99942 * 27 24 23 48 48 H 1.08997 * 109.47227 * 180.02562 * 27 24 23 49 49 H 1.09006 * 109.47174 * 300.00076 * 27 24 23 50 50 H 1.09004 * 110.00871 * 137.45357 * 28 20 19 51 51 H 1.08999 * 110.00677 * 258.77419 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1941 2.0461 -1.1860 5 1 2.5401 3.0692 -1.1853 6 6 1.9271 1.4038 -2.3889 7 7 1.0149 0.4594 -2.4410 8 14 2.8649 1.8828 -3.9318 9 1 4.0895 1.0506 -4.0451 10 1 2.0048 1.6626 -5.1221 11 1 3.2458 3.3161 -3.8546 12 6 2.2948 1.9982 1.1659 13 8 2.6161 3.1678 1.1719 14 6 2.2047 1.2349 2.4623 15 6 0.7939 0.9214 2.9875 16 6 1.3516 1.1340 4.4041 17 6 2.4207 2.0365 3.7700 18 1 2.1964 3.1024 3.7283 19 6 3.8553 1.6945 4.1994 20 7 4.2777 0.5016 3.4582 21 6 5.4868 -0.0866 3.5515 22 8 5.7343 -1.0751 2.8897 23 8 6.4203 0.4212 4.3782 24 6 7.6995 -0.2641 4.4282 25 6 8.3357 -0.2587 3.0368 26 6 8.6235 0.4523 5.4150 27 6 7.4867 -1.7084 4.8862 28 6 3.1778 0.0486 2.5989 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.8282 0.0112 -3.2808 35 1 0.0468 1.6603 2.6977 36 1 0.4744 -0.1026 2.7940 37 1 1.7571 0.2275 4.8535 38 1 0.6686 1.6662 5.0661 39 1 4.5184 2.5274 3.9659 40 1 3.8812 1.4915 5.2700 41 1 8.4874 0.7702 2.7106 42 1 9.2958 -0.7736 3.0744 43 1 7.6771 -0.7694 2.3342 44 1 8.1701 0.4481 6.4061 45 1 9.5839 -0.0618 5.4523 46 1 8.7752 1.4814 5.0892 47 1 6.8281 -2.2190 4.1836 48 1 8.4469 -2.2227 4.9242 49 1 7.0334 -1.7122 5.8775 50 1 3.5622 -0.2334 1.6186 51 1 2.6706 -0.7997 3.0585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120947974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:17 Heat of formation + Delta-G solvation = -65.526578 kcal Electronic energy + Delta-G solvation = -32181.356651 eV Core-core repulsion = 28082.864425 eV Total energy + Delta-G solvation = -4098.492226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28920 -40.21184 -37.79365 -36.79892 -35.05420 -34.57952 -33.66074 -31.86753 -29.54359 -29.17607 -27.68880 -27.48626 -27.41427 -25.46383 -24.01995 -22.92844 -22.14315 -21.38280 -20.05914 -19.40648 -18.45242 -17.36280 -16.80116 -16.50313 -16.44979 -16.04224 -15.18921 -14.97054 -14.62650 -14.23038 -14.15694 -14.12080 -13.79485 -13.54410 -13.10563 -13.00619 -12.81421 -12.61427 -12.48827 -12.30576 -12.15442 -11.97205 -11.95159 -11.87723 -11.73543 -11.56123 -11.38957 -11.30339 -11.15386 -11.00704 -10.85509 -10.62928 -10.35707 -10.34848 -10.24780 -10.13024 -9.97392 -9.89149 -9.72100 -8.79896 -8.59579 -8.25341 -7.82009 -6.38732 -3.74487 2.19269 2.99273 3.15530 3.27572 3.32073 3.78196 3.98547 4.11107 4.37917 4.62297 4.65463 4.69355 4.76261 4.83403 4.84191 4.93551 5.10994 5.35716 5.40337 5.44042 5.45231 5.51118 5.58564 5.59696 5.67728 5.71879 5.78327 5.80439 5.85490 5.88402 5.92990 5.98703 6.10931 6.15133 6.21055 6.23301 6.30230 6.39963 6.45264 6.54537 6.59566 6.61509 6.70610 6.82634 7.28993 7.48836 7.64204 7.81519 8.08893 8.48034 8.51043 9.17917 9.44764 9.99883 10.59524 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003947 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.608574 B = 7092.268654 C = 8299.964028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.118 3.882 3 N -0.433 5.433 4 C -0.311 4.311 5 H 0.105 0.895 6 C 0.036 3.964 7 N -0.856 5.856 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.461 3.539 13 O -0.591 6.591 14 C -0.104 4.104 15 C -0.108 4.108 16 C -0.134 4.134 17 C -0.095 4.095 18 H 0.124 0.876 19 C 0.117 3.883 20 N -0.594 5.594 21 C 0.668 3.332 22 O -0.568 6.568 23 O -0.361 6.361 24 C 0.135 3.865 25 C -0.185 4.185 26 C -0.139 4.139 27 C -0.182 4.182 28 C 0.150 3.850 29 H 0.027 0.973 30 H 0.097 0.903 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -4.452 15.182 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 N -0.150 5.150 4 C -0.438 4.438 5 H 0.123 0.877 6 C -0.168 4.168 7 N -0.495 5.495 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.249 3.751 13 O -0.476 6.476 14 C -0.108 4.108 15 C -0.146 4.146 16 C -0.171 4.171 17 C -0.114 4.114 18 H 0.142 0.858 19 C -0.006 4.006 20 N -0.334 5.334 21 C 0.423 3.577 22 O -0.458 6.458 23 O -0.276 6.276 24 C 0.098 3.902 25 C -0.242 4.242 26 C -0.196 4.196 27 C -0.240 4.240 28 C 0.029 3.971 29 H 0.046 0.954 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.422 -4.376 14.828 16.741 hybrid contribution 0.410 -0.008 -0.930 1.016 sum 6.832 -4.384 13.899 16.096 Atomic orbital electron populations 1.22236 0.96333 0.99751 1.02506 1.21596 0.94960 0.83519 1.00476 1.43800 1.54708 1.11650 1.04812 1.19708 1.42779 0.99590 0.81754 0.87686 1.25158 0.95708 0.96797 0.99122 1.70192 1.26005 1.26102 1.27206 0.86150 0.79966 0.79385 0.80627 1.20382 1.21144 1.19421 1.19016 0.85565 0.87145 0.83384 1.90500 1.54428 1.16485 1.86235 1.22784 0.96749 0.95992 0.95310 1.22871 0.94632 1.02534 0.94556 1.22907 0.97856 0.99498 0.96826 1.23348 0.92806 1.00857 0.94433 0.85843 1.21674 0.96108 0.87394 0.95404 1.46911 1.10751 1.30422 1.45346 1.17405 0.80025 0.81280 0.78945 1.90892 1.79469 1.27193 1.48229 1.86308 1.23845 1.56438 1.61002 1.22035 0.79358 0.92094 0.96680 1.22523 1.01778 1.03099 0.96771 1.21842 0.98000 1.01234 0.98552 1.22511 1.03492 0.95507 1.02441 1.21784 0.85277 0.95090 0.94941 0.95448 0.88450 0.94666 0.88731 0.94477 0.92253 0.89106 0.90561 0.90050 0.90779 0.91029 0.91261 0.92084 0.91324 0.89231 0.91591 0.90296 0.91455 0.89301 0.91318 0.92333 0.89559 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.43 37.16 0.35 -2.71 16 2 C 0.12 2.58 4.70 -4.04 -0.02 2.56 16 3 N -0.43 -10.78 2.63 -114.80 -0.30 -11.09 16 4 C -0.31 -8.53 9.43 -14.93 -0.14 -8.67 16 5 H 0.11 3.09 7.32 -52.49 -0.38 2.70 16 6 C 0.04 0.92 4.94 -17.47 -0.09 0.83 16 7 N -0.86 -21.46 8.26 55.50 0.46 -21.00 16 8 Si 0.91 20.52 29.64 -169.99 -5.04 15.48 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.46 10.98 6.90 -10.98 -0.08 10.90 16 13 O -0.59 -16.12 16.01 5.55 0.09 -16.03 16 14 C -0.10 -1.86 0.55 -153.71 -0.08 -1.94 16 15 C -0.11 -1.58 4.96 -25.95 -0.13 -1.71 16 16 C -0.13 -1.62 7.23 -26.04 -0.19 -1.80 16 17 C -0.10 -1.43 4.34 -88.99 -0.39 -1.82 16 18 H 0.12 1.95 7.94 -51.93 -0.41 1.54 16 19 C 0.12 1.72 6.37 -3.64 -0.02 1.70 16 20 N -0.59 -9.99 3.31 -178.14 -0.59 -10.58 16 21 C 0.67 11.58 7.91 54.05 0.43 12.01 16 22 O -0.57 -10.83 12.16 -19.28 -0.23 -11.06 16 23 O -0.36 -5.46 9.47 -40.32 -0.38 -5.84 16 24 C 0.14 1.66 1.13 -90.62 -0.10 1.56 16 25 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 26 C -0.14 -1.25 8.85 37.16 0.33 -0.93 16 27 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 28 C 0.15 2.60 4.28 -3.36 -0.01 2.59 16 29 H 0.03 0.51 5.77 -51.93 -0.30 0.21 16 30 H 0.10 2.30 6.08 -51.93 -0.32 1.99 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 33 H 0.04 0.72 4.44 -51.93 -0.23 0.49 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.09 1.40 7.86 -51.93 -0.41 1.00 16 36 H 0.08 1.03 7.68 -51.93 -0.40 0.64 16 37 H 0.08 0.92 7.58 -51.93 -0.39 0.53 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.73 6.74 -51.93 -0.35 1.38 16 51 H 0.07 1.11 7.42 -51.93 -0.39 0.73 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -30.72 384.98 -8.00 -38.72 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.28 Total: 6.84 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 0.48 Total: 8.76 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.43 Total: -42.67 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.53 Total: -32.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.04 Total: 15.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.72 -8.00 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120947974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.810 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds