Wall clock time and date at job start Tue Mar 31 2020 21:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46947 * 2 1 4 4 C 1.37096 * 119.99749 * 272.69804 * 3 2 1 5 5 H 1.07999 * 119.99269 * 179.09554 * 4 3 2 6 6 C 1.38952 * 120.00465 * 359.09328 * 4 3 2 7 7 N 1.31411 * 119.99604 * 29.42757 * 6 4 3 8 8 Si 1.86797 * 120.00193 * 209.42533 * 6 4 3 9 9 H 1.48492 * 109.47038 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.46914 * 210.00164 * 8 6 4 11 11 H 1.48503 * 109.47129 * 329.99939 * 8 6 4 12 12 C 1.34775 * 119.99755 * 92.70209 * 3 2 1 13 13 O 1.21292 * 119.99932 * 184.75405 * 12 3 2 14 14 C 1.50706 * 120.00070 * 4.75424 * 12 3 2 15 15 C 1.53775 * 116.86550 * 285.92885 * 14 12 3 16 16 C 1.53718 * 87.34559 * 215.89466 * 15 14 12 17 17 C 1.53605 * 87.32694 * 25.38365 * 16 15 14 18 18 H 1.09004 * 116.55890 * 92.96649 * 17 16 15 19 19 C 1.53609 * 113.81878 * 230.23724 * 17 16 15 20 20 N 1.46657 * 107.98794 * 77.15044 * 19 17 16 21 21 C 1.34776 * 125.33278 * 178.84554 * 20 19 17 22 22 O 1.21507 * 120.00132 * 180.02562 * 21 20 19 23 23 O 1.34640 * 119.99808 * 0.02906 * 21 20 19 24 24 C 1.45199 * 116.99934 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.47206 * 59.99864 * 24 23 21 26 26 C 1.53003 * 109.46809 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.47027 * 299.99660 * 24 23 21 28 28 C 1.46741 * 109.33915 * 358.84795 * 20 19 17 29 29 H 1.09006 * 109.46847 * 299.99567 * 1 2 3 30 30 H 1.08995 * 109.47389 * 59.99968 * 1 2 3 31 31 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46847 * 240.00433 * 2 1 3 33 33 H 1.08995 * 109.47389 * 120.00032 * 2 1 3 34 34 H 0.96999 * 119.99618 * 179.97438 * 7 6 4 35 35 H 1.08999 * 113.57093 * 330.51045 * 15 14 12 36 36 H 1.09000 * 113.56907 * 101.28071 * 15 14 12 37 37 H 1.09007 * 113.57346 * 270.77751 * 16 15 14 38 38 H 1.08994 * 113.57348 * 140.00034 * 16 15 14 39 39 H 1.08996 * 109.76558 * 196.78265 * 19 17 16 40 40 H 1.08997 * 109.76786 * 317.51586 * 19 17 16 41 41 H 1.08997 * 109.47410 * 60.00396 * 25 24 23 42 42 H 1.09006 * 109.46790 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.46898 * 299.99662 * 25 24 23 44 44 H 1.08992 * 109.47391 * 59.99876 * 26 24 23 45 45 H 1.09001 * 109.46930 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47031 * 299.99617 * 26 24 23 47 47 H 1.08996 * 109.47359 * 59.99942 * 27 24 23 48 48 H 1.08997 * 109.47227 * 180.02562 * 27 24 23 49 49 H 1.09006 * 109.47174 * 300.00076 * 27 24 23 50 50 H 1.09004 * 110.00871 * 137.45357 * 28 20 19 51 51 H 1.08999 * 110.00677 * 258.77419 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1941 2.0461 -1.1860 5 1 2.5401 3.0692 -1.1853 6 6 1.9271 1.4038 -2.3889 7 7 1.0149 0.4594 -2.4410 8 14 2.8649 1.8828 -3.9318 9 1 4.0895 1.0506 -4.0451 10 1 2.0048 1.6626 -5.1221 11 1 3.2458 3.3161 -3.8546 12 6 2.2948 1.9982 1.1659 13 8 2.6161 3.1678 1.1719 14 6 2.2047 1.2349 2.4623 15 6 0.7939 0.9214 2.9875 16 6 1.3516 1.1340 4.4041 17 6 2.4207 2.0365 3.7700 18 1 2.1964 3.1024 3.7283 19 6 3.8553 1.6945 4.1994 20 7 4.2777 0.5016 3.4582 21 6 5.4868 -0.0866 3.5515 22 8 5.7343 -1.0751 2.8897 23 8 6.4203 0.4212 4.3782 24 6 7.6995 -0.2641 4.4282 25 6 8.3357 -0.2587 3.0368 26 6 8.6235 0.4523 5.4150 27 6 7.4867 -1.7084 4.8862 28 6 3.1778 0.0486 2.5989 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.8282 0.0112 -3.2808 35 1 0.0468 1.6603 2.6977 36 1 0.4744 -0.1026 2.7940 37 1 1.7571 0.2275 4.8535 38 1 0.6686 1.6662 5.0661 39 1 4.5184 2.5274 3.9659 40 1 3.8812 1.4915 5.2700 41 1 8.4874 0.7702 2.7106 42 1 9.2958 -0.7736 3.0744 43 1 7.6771 -0.7694 2.3342 44 1 8.1701 0.4481 6.4061 45 1 9.5839 -0.0618 5.4523 46 1 8.7752 1.4814 5.0892 47 1 6.8281 -2.2190 4.1836 48 1 8.4469 -2.2227 4.9242 49 1 7.0334 -1.7122 5.8775 50 1 3.5622 -0.2334 1.6186 51 1 2.6706 -0.7997 3.0585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120947974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:16 Heat of formation + Delta-G solvation = -83.644204 kcal Electronic energy + Delta-G solvation = -32182.142290 eV Core-core repulsion = 28082.864425 eV Total energy + Delta-G solvation = -4099.277865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61489 -41.46523 -39.51059 -38.02274 -36.99650 -35.84425 -34.71562 -33.82546 -31.27246 -30.59576 -28.93496 -28.37825 -28.28512 -27.22825 -25.52990 -24.16549 -23.79666 -22.58539 -21.61377 -20.60730 -19.74455 -18.94554 -18.48529 -18.00170 -17.62715 -17.48526 -16.81518 -16.24083 -16.06008 -15.99101 -15.50544 -15.33212 -14.91793 -14.87690 -14.69754 -14.46635 -14.22467 -14.07638 -13.69285 -13.50049 -13.32951 -13.19689 -13.10548 -13.07539 -12.90905 -12.86579 -12.82873 -12.71435 -12.54011 -12.41957 -12.27015 -12.20480 -12.01760 -11.87172 -11.66961 -11.48676 -11.40793 -11.14217 -11.09466 -10.73001 -10.20290 -9.80152 -9.76871 -8.37359 -5.81209 0.99448 1.30887 1.38946 1.48463 1.68217 1.98441 2.23969 2.82059 2.94079 3.06067 3.18059 3.43963 3.63109 3.75122 3.79282 3.80019 3.92199 3.94394 4.18920 4.33796 4.41498 4.45634 4.50421 4.56291 4.61032 4.61757 4.70306 4.72876 4.75575 4.83595 4.87343 4.87721 4.89830 4.96106 4.98517 5.06056 5.13828 5.17171 5.19781 5.26021 5.27617 5.34847 5.42088 5.42619 5.49108 5.52381 6.01545 6.05902 6.35464 6.54362 7.18756 7.19304 7.52530 8.08532 8.58394 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003947 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.608574 B = 7092.268654 C = 8299.964028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.122 3.878 3 N -0.445 5.445 4 C -0.357 4.357 5 H 0.069 0.931 6 C 0.013 3.987 7 N -0.854 5.854 8 Si 0.968 3.032 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.449 3.551 13 O -0.640 6.640 14 C -0.117 4.117 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.094 4.094 18 H 0.111 0.889 19 C 0.119 3.881 20 N -0.599 5.599 21 C 0.663 3.337 22 O -0.592 6.592 23 O -0.363 6.363 24 C 0.121 3.879 25 C -0.183 4.183 26 C -0.132 4.132 27 C -0.176 4.176 28 C 0.157 3.843 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.274 0.726 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.050 0.950 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -6.115 17.697 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.000 4.000 3 N -0.162 5.162 4 C -0.484 4.484 5 H 0.087 0.913 6 C -0.191 4.191 7 N -0.491 5.491 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.205 1.205 12 C 0.239 3.761 13 O -0.529 6.529 14 C -0.121 4.121 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.113 4.113 18 H 0.129 0.871 19 C -0.003 4.003 20 N -0.340 5.340 21 C 0.419 3.581 22 O -0.483 6.483 23 O -0.277 6.277 24 C 0.085 3.915 25 C -0.240 4.240 26 C -0.189 4.189 27 C -0.233 4.233 28 C 0.035 3.965 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.430 -6.065 17.349 19.471 hybrid contribution 0.463 0.531 -1.779 1.914 sum 6.893 -5.534 15.570 17.904 Atomic orbital electron populations 1.22077 0.94946 1.01136 1.01587 1.21602 0.95977 0.81959 1.00499 1.44007 1.54947 1.12594 1.04609 1.19493 1.45842 0.99135 0.83930 0.91300 1.25720 0.95684 0.96865 1.00829 1.70259 1.25129 1.25647 1.28087 0.85337 0.78941 0.78388 0.78106 1.20181 1.19284 1.20498 1.20106 0.83847 0.87112 0.85046 1.90448 1.56161 1.18929 1.87370 1.22806 0.99663 0.96710 0.92901 1.22903 0.92100 1.03227 0.96014 1.22827 0.96249 0.99484 0.95504 1.23431 0.94185 1.00656 0.93050 0.87110 1.21764 0.95421 0.86153 0.96984 1.47014 1.10717 1.30889 1.45347 1.17584 0.80392 0.81130 0.79017 1.90886 1.79941 1.28338 1.49160 1.86326 1.24497 1.56728 1.60168 1.22499 0.78572 0.93220 0.97183 1.22498 1.02478 1.02471 0.96538 1.21871 0.98298 1.00963 0.97806 1.22448 1.04296 0.94669 1.01926 1.21675 0.85387 0.95632 0.93815 0.93861 0.91819 0.91969 0.91285 0.91789 0.91575 0.90116 0.88770 0.88034 0.87866 0.92774 0.87778 0.92831 0.88467 0.92700 0.90590 0.87601 0.91757 0.92301 0.88793 0.91308 0.93173 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 9.43 71.98 0.68 -4.91 16 2 C 0.12 5.42 4.70 86.38 0.41 5.83 16 3 N -0.44 -23.18 2.63 -635.51 -1.67 -24.85 16 4 C -0.36 -20.71 9.43 84.04 0.79 -19.91 16 5 H 0.07 4.40 7.32 -2.91 -0.02 4.37 16 6 C 0.01 0.71 4.94 84.93 0.42 1.13 16 7 N -0.85 -43.37 8.26 21.66 0.18 -43.19 16 8 Si 0.97 43.20 29.64 68.60 2.03 45.23 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 C 0.45 22.33 6.90 87.66 0.61 22.94 16 13 O -0.64 -37.17 16.01 -3.07 -0.05 -37.21 16 14 C -0.12 -4.13 0.55 -51.66 -0.03 -4.15 16 15 C -0.10 -2.80 4.96 31.10 0.15 -2.65 16 16 C -0.10 -2.09 7.23 31.04 0.22 -1.86 16 17 C -0.09 -2.70 4.34 -9.74 -0.04 -2.74 16 18 H 0.11 3.49 7.94 -2.38 -0.02 3.47 16 19 C 0.12 3.34 6.37 86.55 0.55 3.89 16 20 N -0.60 -19.80 3.31 -947.92 -3.14 -22.94 16 21 C 0.66 22.97 7.91 129.79 1.03 23.99 16 22 O -0.59 -23.04 12.16 19.82 0.24 -22.79 16 23 O -0.36 -10.70 9.47 -55.49 -0.53 -11.22 16 24 C 0.12 2.81 1.13 -10.79 -0.01 2.80 16 25 C -0.18 -4.58 8.37 71.98 0.60 -3.98 16 26 C -0.13 -2.02 8.85 71.98 0.64 -1.39 16 27 C -0.18 -3.71 8.37 71.98 0.60 -3.10 16 28 C 0.16 5.32 4.28 86.69 0.37 5.69 16 29 H 0.04 1.56 5.77 -2.38 -0.01 1.55 16 30 H 0.06 3.02 6.08 -2.39 -0.01 3.01 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 3.40 5.97 -2.38 -0.01 3.38 16 33 H 0.06 2.46 4.44 -2.39 -0.01 2.44 16 34 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 35 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 36 H 0.09 2.20 7.68 -2.39 -0.02 2.18 16 37 H 0.10 1.74 7.58 -2.38 -0.02 1.72 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 2.22 8.13 -2.39 -0.02 2.20 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.78 5.88 -2.38 -0.01 1.76 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.63 5.88 -2.39 -0.01 1.61 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.05 2.06 6.74 -2.38 -0.02 2.05 16 51 H 0.11 2.89 7.42 -2.39 -0.02 2.87 16 Total: -1.00 -73.10 384.98 4.99 -68.11 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.93 Total: 27.32 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 6.99 Total: 21.56 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.63 Total: -90.98 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: -0.33 Total: -71.23 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.10 4.99 -68.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120947974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.536 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds