Wall clock time and date at job start Tue Mar 31 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47198 * 2 1 4 4 C 1.42900 * 114.00015 * 184.97599 * 3 2 1 5 5 H 1.09004 * 109.46971 * 34.59559 * 4 3 2 6 6 C 1.50704 * 109.47200 * 154.59472 * 4 3 2 7 7 O 1.21272 * 120.00169 * 189.34646 * 6 4 3 8 8 N 1.34778 * 119.99757 * 9.34548 * 6 4 3 9 9 C 1.47386 * 135.85463 * 175.05073 * 8 6 4 10 10 C 1.51785 * 87.59924 * 205.59699 * 9 8 6 11 11 C 1.47387 * 135.85144 * 355.00473 * 8 6 4 12 12 C 1.53512 * 117.00183 * 92.95738 * 10 9 8 13 13 C 1.54630 * 102.70427 * 164.16340 * 12 10 9 14 14 N 1.47146 * 107.37763 * 339.38946 * 13 12 10 15 15 C 1.36938 * 125.57964 * 179.06045 * 14 13 12 16 16 H 1.07997 * 119.99748 * 185.40711 * 15 14 13 17 17 C 1.38810 * 120.00236 * 5.41477 * 15 14 13 18 18 N 1.31622 * 119.99673 * 5.62756 * 17 15 14 19 19 Si 1.86795 * 120.00382 * 185.63204 * 17 15 14 20 20 H 1.48500 * 109.47066 * 84.99423 * 19 17 15 21 21 H 1.48496 * 109.47161 * 204.99578 * 19 17 15 22 22 H 1.48497 * 109.46774 * 324.99822 * 19 17 15 23 23 C 1.47760 * 108.83933 * 359.08676 * 14 13 12 24 24 C 1.53005 * 109.47560 * 274.59684 * 4 3 2 25 25 H 1.09001 * 110.45702 * 51.79074 * 24 4 3 26 26 C 1.54502 * 110.51174 * 174.39756 * 24 4 3 27 27 C 1.54476 * 104.06263 * 118.64415 * 26 24 4 28 28 O 1.44432 * 104.80458 * 23.97798 * 27 26 24 29 29 C 1.44429 * 105.27065 * 319.48700 * 28 27 26 30 30 H 1.09004 * 109.47177 * 299.99858 * 1 2 3 31 31 H 1.08999 * 109.47077 * 60.00230 * 1 2 3 32 32 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47720 * 239.99889 * 2 1 3 34 34 H 1.09012 * 109.47017 * 120.00087 * 2 1 3 35 35 H 1.09005 * 113.54151 * 320.28892 * 9 8 6 36 36 H 1.08997 * 113.54514 * 90.90011 * 9 8 6 37 37 H 1.08998 * 113.54381 * 269.02776 * 11 8 6 38 38 H 1.08998 * 113.55013 * 39.63746 * 11 8 6 39 39 H 1.08995 * 110.76897 * 282.47045 * 12 10 9 40 40 H 1.09010 * 110.76003 * 45.67700 * 12 10 9 41 41 H 1.08998 * 109.86143 * 98.83611 * 13 12 10 42 42 H 1.09000 * 109.86626 * 219.94258 * 13 12 10 43 43 H 0.96998 * 119.99939 * 180.02562 * 18 17 15 44 44 H 1.09000 * 110.40605 * 263.50189 * 23 14 13 45 45 H 1.08996 * 110.40324 * 141.07506 * 23 14 13 46 46 H 1.09000 * 110.51414 * 237.28981 * 26 24 4 47 47 H 1.08996 * 110.51699 * 359.86173 * 26 24 4 48 48 H 1.09005 * 110.37815 * 142.80581 * 27 26 24 49 49 H 1.09002 * 110.37370 * 265.03398 * 27 26 24 50 50 H 1.08996 * 110.37036 * 281.67965 * 29 28 27 51 51 H 1.09000 * 110.36681 * 159.33989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1132 5 1 3.8050 0.6648 -0.7532 6 6 3.7760 2.7984 -0.7150 7 8 4.9170 3.0308 -1.0540 8 7 2.8208 3.7354 -0.8765 9 6 2.7814 5.1394 -1.3232 10 6 1.5200 5.3009 -0.4945 11 6 1.3611 3.8017 -0.6839 12 6 1.6916 5.8070 0.9446 13 6 0.2564 6.2367 1.3273 14 7 -0.4865 6.4519 0.0755 15 6 -1.8011 6.8242 -0.0169 16 1 -2.2819 6.8726 -0.9827 17 6 -2.5155 7.1397 1.1307 18 7 -1.9027 7.1889 2.2946 19 14 -4.3463 7.4943 1.0233 20 1 -5.1018 6.2169 1.0755 21 1 -4.7513 8.3559 2.1629 22 1 -4.6412 8.1919 -0.2540 23 6 0.4179 6.1999 -1.0654 24 6 4.0596 1.3458 1.2747 25 1 3.7008 0.4513 1.7837 26 6 5.6007 1.3258 1.1665 27 6 6.0485 2.5775 1.9533 28 8 4.9655 2.8434 2.8712 29 6 3.7585 2.6073 2.1140 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.6193 5.7352 -0.9612 36 1 2.6156 5.2509 -2.3947 37 1 0.7919 3.5344 -1.5742 38 1 1.0157 3.2823 0.2099 39 1 2.0422 5.0069 1.5964 40 1 2.3739 6.6565 0.9766 41 1 -0.2221 5.4507 1.9115 42 1 0.2878 7.1618 1.9030 43 1 -2.4020 7.4089 3.0965 44 1 0.8415 7.1362 -1.4287 45 1 -0.1144 5.6866 -1.8662 46 1 6.0040 0.4225 1.6242 47 1 5.9114 1.3960 0.1241 48 1 6.9684 2.3725 2.5011 49 1 6.1905 3.4203 1.2768 50 1 3.5474 3.4552 1.4624 51 1 2.9192 2.4251 2.7852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148005056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:06 Heat of formation + Delta-G solvation = -52.642368 kcal Electronic energy + Delta-G solvation = -32205.288831 eV Core-core repulsion = 28107.355306 eV Total energy + Delta-G solvation = -4097.933524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07762 -39.73995 -38.18007 -37.75680 -35.63297 -33.17510 -32.19974 -31.29843 -29.72388 -29.30696 -28.60712 -26.67631 -25.90622 -25.30932 -23.80433 -23.15558 -22.54299 -21.12475 -20.27859 -19.30526 -18.29637 -17.59933 -16.75700 -16.67844 -16.59414 -16.15580 -15.78453 -15.42705 -14.94769 -14.89746 -14.77347 -14.29270 -14.18183 -13.87466 -13.45053 -13.19889 -13.01483 -12.78602 -12.56564 -12.41709 -12.32953 -12.17722 -11.89216 -11.81815 -11.72645 -11.47905 -11.28635 -11.15054 -11.08819 -10.95500 -10.85608 -10.60004 -10.40095 -10.16681 -10.10458 -9.97026 -9.81169 -9.73618 -9.62141 -9.37798 -8.59418 -8.50894 -6.81029 -5.69147 -3.04212 2.53274 2.90084 3.22885 3.40753 3.45775 3.47684 3.91194 4.27300 4.37959 4.48729 4.61280 4.69205 4.77968 4.81416 4.86352 5.01272 5.02794 5.11822 5.18093 5.23351 5.29252 5.32976 5.48218 5.50900 5.57520 5.65823 5.67885 5.69971 5.74826 5.76685 5.81339 5.83648 5.84750 5.90576 5.93491 6.02657 6.17213 6.24039 6.28290 6.49340 6.56354 6.70284 6.73795 6.74423 6.80896 7.52803 7.67380 7.82388 7.84564 8.13487 8.27286 9.22534 9.83144 10.49287 11.41328 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003530 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.923666 B = 7931.217148 C = 8365.097662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.087 3.913 5 H 0.093 0.907 6 C 0.551 3.449 7 O -0.545 6.545 8 N -0.628 5.628 9 C 0.116 3.884 10 C -0.110 4.110 11 C 0.137 3.863 12 C -0.116 4.116 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.155 3.845 24 C -0.136 4.136 25 H 0.095 0.905 26 C -0.152 4.152 27 C 0.047 3.953 28 O -0.375 6.375 29 C 0.051 3.949 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.517 -15.120 -4.435 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.286 6.286 4 C 0.026 3.974 5 H 0.110 0.890 6 C 0.340 3.660 7 O -0.425 6.425 8 N -0.361 5.361 9 C -0.006 4.006 10 C -0.112 4.112 11 C 0.015 3.985 12 C -0.154 4.154 13 C 0.054 3.946 14 N -0.329 5.329 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.028 3.972 24 C -0.155 4.155 25 H 0.113 0.887 26 C -0.190 4.190 27 C -0.030 4.030 28 O -0.294 6.294 29 C -0.026 4.026 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.988 -14.862 -4.193 19.549 hybrid contribution -0.892 -0.278 -0.284 0.976 sum 11.097 -15.140 -4.478 19.297 Atomic orbital electron populations 1.21752 0.93064 1.02268 1.03880 1.22591 0.96130 0.83438 0.99991 1.88118 1.19103 1.26796 1.94538 1.22293 0.83007 0.95940 0.96142 0.88965 1.19636 0.84206 0.84012 0.78173 1.90699 1.19893 1.79585 1.52293 1.49782 1.09576 1.12939 1.63773 1.22825 0.97867 0.80675 0.99276 1.22233 0.95447 0.95649 0.97862 1.22779 0.78908 0.94451 1.02331 1.22463 1.00619 0.99551 0.92783 1.21227 0.85227 0.99816 0.88357 1.44525 1.07719 1.80761 0.99919 1.19020 0.84583 1.38651 0.93410 0.90506 1.24785 0.98234 1.01682 0.95595 1.69956 1.34146 1.54651 0.97935 0.86170 0.85149 0.77703 0.76924 1.21622 1.21758 1.20782 1.21110 0.89615 0.94925 0.91572 1.22952 0.96334 1.01011 0.95226 0.88714 1.23030 0.93629 0.99192 1.03102 1.23378 0.91075 0.96552 0.92021 1.89120 1.15078 1.90222 1.34936 1.23555 0.88625 0.95483 0.94908 0.91283 0.91554 0.91191 0.93375 0.93204 0.90577 0.89823 0.90026 0.88965 0.92161 0.91914 0.94846 0.92507 0.93763 0.95726 0.94064 0.90759 0.88751 0.89402 0.91736 0.91264 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.94 16 2 C 0.05 0.48 6.48 37.15 0.24 0.72 16 3 O -0.37 -4.18 6.73 -35.23 -0.24 -4.42 16 4 C 0.09 1.00 2.31 -27.88 -0.06 0.94 16 5 H 0.09 0.92 7.78 -51.93 -0.40 0.51 16 6 C 0.55 7.94 5.59 -10.98 -0.06 7.88 16 7 O -0.55 -9.04 15.73 5.56 0.09 -8.96 16 8 N -0.63 -9.06 3.25 -185.45 -0.60 -9.67 16 9 C 0.12 1.65 8.03 -7.48 -0.06 1.59 16 10 C -0.11 -1.79 1.06 -155.28 -0.16 -1.95 16 11 C 0.14 2.03 6.42 -7.41 -0.05 1.98 16 12 C -0.12 -2.11 6.40 -25.61 -0.16 -2.28 16 13 C 0.18 4.18 5.42 -2.83 -0.02 4.16 16 14 N -0.60 -14.67 3.41 -170.54 -0.58 -15.25 16 15 C -0.23 -6.15 10.27 -15.06 -0.15 -6.30 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16 18 N -0.92 -26.52 10.41 55.49 0.58 -25.94 16 19 Si 0.91 21.67 29.56 -169.99 -5.02 16.64 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.15 2.96 6.71 -3.22 -0.02 2.94 16 24 C -0.14 -1.50 3.11 -89.05 -0.28 -1.78 16 25 H 0.09 0.90 7.52 -51.93 -0.39 0.51 16 26 C -0.15 -1.61 6.10 -25.17 -0.15 -1.76 16 27 C 0.05 0.57 7.63 37.93 0.29 0.86 16 28 O -0.37 -5.50 11.65 -35.23 -0.41 -5.91 16 29 C 0.05 0.69 6.92 37.93 0.26 0.96 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.37 7.97 -51.93 -0.41 -0.05 16 34 H 0.05 0.38 7.55 -51.92 -0.39 -0.01 16 35 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 38 H 0.09 1.45 6.80 -51.93 -0.35 1.10 16 39 H 0.06 1.05 7.18 -51.93 -0.37 0.68 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 41 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 42 H 0.06 1.51 7.06 -51.93 -0.37 1.14 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.07 6.27 -51.93 -0.33 0.75 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.06 0.88 7.99 -51.93 -0.42 0.46 16 50 H 0.07 1.06 5.06 -51.93 -0.26 0.80 16 51 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -31.18 392.91 -9.09 -40.27 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.71 Total: 0.58 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.10 Total: 6.73 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.61 Total: -50.85 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.56 Total: -19.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.18 -9.09 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148005056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.372 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds