Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47198 * 2 1 4 4 C 1.42900 * 114.00015 * 184.97599 * 3 2 1 5 5 H 1.09004 * 109.46971 * 34.59559 * 4 3 2 6 6 C 1.50704 * 109.47200 * 154.59472 * 4 3 2 7 7 O 1.21272 * 120.00169 * 189.34646 * 6 4 3 8 8 N 1.34778 * 119.99757 * 9.34548 * 6 4 3 9 9 C 1.47386 * 135.85463 * 175.05073 * 8 6 4 10 10 C 1.51785 * 87.59924 * 205.59699 * 9 8 6 11 11 C 1.47387 * 135.85144 * 355.00473 * 8 6 4 12 12 C 1.53512 * 117.00183 * 92.95738 * 10 9 8 13 13 C 1.54630 * 102.70427 * 164.16340 * 12 10 9 14 14 N 1.47146 * 107.37763 * 339.38946 * 13 12 10 15 15 C 1.36938 * 125.57964 * 179.06045 * 14 13 12 16 16 H 1.07997 * 119.99748 * 185.40711 * 15 14 13 17 17 C 1.38810 * 120.00236 * 5.41477 * 15 14 13 18 18 N 1.31622 * 119.99673 * 5.62756 * 17 15 14 19 19 Si 1.86795 * 120.00382 * 185.63204 * 17 15 14 20 20 H 1.48500 * 109.47066 * 84.99423 * 19 17 15 21 21 H 1.48496 * 109.47161 * 204.99578 * 19 17 15 22 22 H 1.48497 * 109.46774 * 324.99822 * 19 17 15 23 23 C 1.47760 * 108.83933 * 359.08676 * 14 13 12 24 24 C 1.53005 * 109.47560 * 274.59684 * 4 3 2 25 25 H 1.09001 * 110.45702 * 51.79074 * 24 4 3 26 26 C 1.54502 * 110.51174 * 174.39756 * 24 4 3 27 27 C 1.54476 * 104.06263 * 118.64415 * 26 24 4 28 28 O 1.44432 * 104.80458 * 23.97798 * 27 26 24 29 29 C 1.44429 * 105.27065 * 319.48700 * 28 27 26 30 30 H 1.09004 * 109.47177 * 299.99858 * 1 2 3 31 31 H 1.08999 * 109.47077 * 60.00230 * 1 2 3 32 32 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47720 * 239.99889 * 2 1 3 34 34 H 1.09012 * 109.47017 * 120.00087 * 2 1 3 35 35 H 1.09005 * 113.54151 * 320.28892 * 9 8 6 36 36 H 1.08997 * 113.54514 * 90.90011 * 9 8 6 37 37 H 1.08998 * 113.54381 * 269.02776 * 11 8 6 38 38 H 1.08998 * 113.55013 * 39.63746 * 11 8 6 39 39 H 1.08995 * 110.76897 * 282.47045 * 12 10 9 40 40 H 1.09010 * 110.76003 * 45.67700 * 12 10 9 41 41 H 1.08998 * 109.86143 * 98.83611 * 13 12 10 42 42 H 1.09000 * 109.86626 * 219.94258 * 13 12 10 43 43 H 0.96998 * 119.99939 * 180.02562 * 18 17 15 44 44 H 1.09000 * 110.40605 * 263.50189 * 23 14 13 45 45 H 1.08996 * 110.40324 * 141.07506 * 23 14 13 46 46 H 1.09000 * 110.51414 * 237.28981 * 26 24 4 47 47 H 1.08996 * 110.51699 * 359.86173 * 26 24 4 48 48 H 1.09005 * 110.37815 * 142.80581 * 27 26 24 49 49 H 1.09002 * 110.37370 * 265.03398 * 27 26 24 50 50 H 1.08996 * 110.37036 * 281.67965 * 29 28 27 51 51 H 1.09000 * 110.36681 * 159.33989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1132 5 1 3.8050 0.6648 -0.7532 6 6 3.7760 2.7984 -0.7150 7 8 4.9170 3.0308 -1.0540 8 7 2.8208 3.7354 -0.8765 9 6 2.7814 5.1394 -1.3232 10 6 1.5200 5.3009 -0.4945 11 6 1.3611 3.8017 -0.6839 12 6 1.6916 5.8070 0.9446 13 6 0.2564 6.2367 1.3273 14 7 -0.4865 6.4519 0.0755 15 6 -1.8011 6.8242 -0.0169 16 1 -2.2819 6.8726 -0.9827 17 6 -2.5155 7.1397 1.1307 18 7 -1.9027 7.1889 2.2946 19 14 -4.3463 7.4943 1.0233 20 1 -5.1018 6.2169 1.0755 21 1 -4.7513 8.3559 2.1629 22 1 -4.6412 8.1919 -0.2540 23 6 0.4179 6.1999 -1.0654 24 6 4.0596 1.3458 1.2747 25 1 3.7008 0.4513 1.7837 26 6 5.6007 1.3258 1.1665 27 6 6.0485 2.5775 1.9533 28 8 4.9655 2.8434 2.8712 29 6 3.7585 2.6073 2.1140 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.6193 5.7352 -0.9612 36 1 2.6156 5.2509 -2.3947 37 1 0.7919 3.5344 -1.5742 38 1 1.0157 3.2823 0.2099 39 1 2.0422 5.0069 1.5964 40 1 2.3739 6.6565 0.9766 41 1 -0.2221 5.4507 1.9115 42 1 0.2878 7.1618 1.9030 43 1 -2.4020 7.4089 3.0965 44 1 0.8415 7.1362 -1.4287 45 1 -0.1144 5.6866 -1.8662 46 1 6.0040 0.4225 1.6242 47 1 5.9114 1.3960 0.1241 48 1 6.9684 2.3725 2.5011 49 1 6.1905 3.4203 1.2768 50 1 3.5474 3.4552 1.4624 51 1 2.9192 2.4251 2.7852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148005056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -72.324331 kcal Electronic energy + Delta-G solvation = -32206.142305 eV Core-core repulsion = 28107.355306 eV Total energy + Delta-G solvation = -4098.786998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21708 -40.88489 -39.27462 -38.71786 -37.28095 -34.12448 -34.01869 -32.13819 -31.20255 -30.53469 -29.98936 -27.95870 -27.12295 -26.73114 -25.41092 -24.05284 -23.38880 -22.14815 -22.06846 -20.44602 -19.68150 -18.58744 -18.54722 -17.71521 -17.58036 -17.16521 -16.94973 -16.66322 -16.41368 -16.04016 -15.87890 -15.74245 -15.60927 -15.21872 -14.57768 -14.26247 -14.08432 -14.01411 -13.73547 -13.67387 -13.57556 -13.34622 -13.30330 -13.15278 -12.85877 -12.72896 -12.56406 -12.37550 -12.22304 -12.15150 -12.02324 -11.99950 -11.89362 -11.81851 -11.78150 -11.55580 -11.16568 -10.94333 -10.82426 -10.65643 -10.39333 -9.68927 -8.82372 -7.78138 -5.14672 1.44482 1.50165 1.51766 1.59689 1.80310 2.41618 2.54278 2.94792 3.22307 3.38050 3.46242 3.50531 3.61427 3.75543 3.80443 3.86000 4.00009 4.08641 4.16139 4.22878 4.24975 4.29559 4.35429 4.44752 4.44875 4.54022 4.58643 4.60546 4.71453 4.74609 4.77750 4.78421 4.85661 4.87774 4.94513 4.97192 5.01758 5.05877 5.08492 5.10982 5.20809 5.23123 5.34253 5.51376 5.69066 5.74924 5.82161 6.05180 6.25018 6.68995 7.02310 7.15226 7.83208 8.48260 9.31256 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003530 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.923666 B = 7931.217148 C = 8365.097662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.384 6.384 4 C 0.094 3.906 5 H 0.115 0.885 6 C 0.547 3.453 7 O -0.569 6.569 8 N -0.629 5.629 9 C 0.123 3.877 10 C -0.105 4.105 11 C 0.149 3.851 12 C -0.100 4.100 13 C 0.191 3.809 14 N -0.623 5.623 15 C -0.236 4.236 16 H 0.086 0.914 17 C -0.065 4.065 18 N -0.952 5.952 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.153 3.847 24 C -0.128 4.128 25 H 0.117 0.883 26 C -0.144 4.144 27 C 0.041 3.959 28 O -0.396 6.396 29 C 0.047 3.953 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.000 1.000 42 H 0.016 0.984 43 H 0.244 0.756 44 H 0.031 0.969 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.043 0.957 50 H 0.048 0.952 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 -17.309 -6.096 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.303 6.303 4 C 0.033 3.967 5 H 0.133 0.867 6 C 0.337 3.663 7 O -0.450 6.450 8 N -0.361 5.361 9 C 0.000 4.000 10 C -0.106 4.106 11 C 0.026 3.974 12 C -0.138 4.138 13 C 0.066 3.934 14 N -0.349 5.349 15 C -0.365 4.365 16 H 0.104 0.896 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.803 3.197 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.193 1.193 23 C 0.028 3.972 24 C -0.147 4.147 25 H 0.136 0.864 26 C -0.182 4.182 27 C -0.036 4.036 28 O -0.316 6.316 29 C -0.030 4.030 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.107 0.893 48 H 0.127 0.873 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.582 -17.063 -5.898 22.005 hybrid contribution -1.052 0.429 0.221 1.158 sum 11.530 -16.634 -5.677 21.020 Atomic orbital electron populations 1.21760 0.93393 1.03223 1.02478 1.22772 0.95834 0.82371 1.01531 1.88099 1.18919 1.28653 1.94662 1.22231 0.83380 0.94666 0.96412 0.86704 1.20183 0.83665 0.84866 0.77596 1.90688 1.20716 1.80318 1.53272 1.49764 1.09407 1.13080 1.63890 1.22806 0.96294 0.80787 1.00102 1.22054 0.95954 0.96275 0.96332 1.22660 0.79368 0.92812 1.02517 1.22223 0.97110 0.99951 0.94517 1.20890 0.87931 0.96775 0.87852 1.44803 1.07838 1.80526 1.01718 1.19451 0.85966 1.37407 0.93695 0.89629 1.25600 1.02346 1.02461 0.95427 1.70189 1.35354 1.56204 0.98353 0.85153 0.80254 0.77373 0.76922 1.21221 1.22624 1.19350 1.21273 0.89669 0.95830 0.90465 1.22953 0.96723 1.00402 0.94660 0.86448 1.23003 0.93192 0.99315 1.02657 1.23508 0.91386 0.96736 0.91939 1.89098 1.15961 1.90550 1.35950 1.23548 0.88444 0.96101 0.94876 0.93072 0.92514 0.89094 0.91614 0.91764 0.90642 0.87493 0.88598 0.90019 0.91579 0.91354 0.98209 0.96571 0.94627 0.95161 0.92540 0.88090 0.89309 0.87327 0.93843 0.93421 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.05 0.74 6.48 71.98 0.47 1.21 16 3 O -0.38 -7.94 6.73 -148.98 -1.00 -8.95 16 4 C 0.09 1.92 2.31 29.85 0.07 1.99 16 5 H 0.12 1.86 7.78 -2.38 -0.02 1.84 16 6 C 0.55 14.82 5.59 87.66 0.49 15.31 16 7 O -0.57 -18.06 15.73 -3.00 -0.05 -18.10 16 8 N -0.63 -17.15 3.25 -859.02 -2.79 -19.94 16 9 C 0.12 3.26 8.03 83.67 0.67 3.93 16 10 C -0.10 -3.30 1.06 -52.67 -0.06 -3.35 16 11 C 0.15 4.18 6.42 83.72 0.54 4.72 16 12 C -0.10 -3.70 6.40 31.32 0.20 -3.50 16 13 C 0.19 9.33 5.42 86.81 0.47 9.80 16 14 N -0.62 -30.73 3.41 -693.46 -2.36 -33.09 16 15 C -0.24 -12.82 10.27 84.03 0.86 -11.96 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.67 5.46 84.86 0.46 -3.21 16 18 N -0.95 -57.14 10.41 21.65 0.23 -56.91 16 19 Si 0.97 45.13 29.56 68.60 2.03 47.16 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.15 5.71 6.71 86.22 0.58 6.29 16 24 C -0.13 -2.53 3.11 -9.78 -0.03 -2.56 16 25 H 0.12 1.82 7.52 -2.39 -0.02 1.80 16 26 C -0.14 -2.70 6.10 31.61 0.19 -2.50 16 27 C 0.04 0.95 7.63 72.48 0.55 1.50 16 28 O -0.40 -11.43 11.65 -148.98 -1.74 -13.17 16 29 C 0.05 1.25 6.92 72.48 0.50 1.75 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 0.75 7.97 -2.39 -0.02 0.73 16 34 H 0.06 0.77 7.55 -2.38 -0.02 0.75 16 35 H 0.08 2.05 8.13 -2.38 -0.02 2.03 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.46 8.07 -2.39 -0.02 2.44 16 38 H 0.08 2.52 6.80 -2.39 -0.02 2.51 16 39 H 0.07 2.37 7.18 -2.39 -0.02 2.35 16 40 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.00 -0.02 7.83 -2.39 -0.02 -0.04 16 42 H 0.02 0.91 7.06 -2.39 -0.02 0.89 16 43 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.09 1.81 6.27 -2.39 -0.01 1.79 16 48 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.04 1.18 7.99 -2.39 -0.02 1.16 16 50 H 0.05 1.46 5.06 -2.39 -0.01 1.44 16 51 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -69.62 392.91 1.93 -67.69 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.91 Total: 17.52 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.71 Total: 17.79 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -4.93 Total: -109.94 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -2.79 Total: -40.22 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.62 1.93 -67.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148005056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.630 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds