Wall clock time and date at job start Tue Mar 31 2020 22:16:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42905 * 109.46766 * 2 1
4 4 C 1.42900 * 114.00051 * 180.02562 * 3 2 1
5 5 H 1.09006 * 109.47192 * 29.99424 * 4 3 2
6 6 C 1.52990 * 109.47595 * 149.99526 * 4 3 2
7 7 C 1.50703 * 109.47398 * 295.00018 * 6 4 3
8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 4
9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 4
10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6
11 11 H 1.09004 * 110.64443 * 36.40691 * 10 9 7
12 12 C 1.54319 * 110.71865 * 273.26553 * 10 9 7
13 13 N 1.47026 * 107.27305 * 219.44531 * 12 10 9
14 14 C 1.36933 * 125.64795 * 178.97725 * 13 12 10
15 15 H 1.08003 * 120.00259 * 0.02562 * 14 13 12
16 16 C 1.38813 * 120.00172 * 180.02562 * 14 13 12
17 17 N 1.31626 * 119.99664 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00294 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.47237 * 60.00002 * 18 16 14
20 20 H 1.48501 * 109.47357 * 180.02562 * 18 16 14
21 21 H 1.48498 * 109.47371 * 299.99907 * 18 16 14
22 22 C 1.47415 * 108.70097 * 358.93997 * 13 12 10
23 23 C 1.54908 * 104.83313 * 24.12967 * 22 13 12
24 24 H 1.08996 * 111.00764 * 81.06570 * 23 22 13
25 25 O 1.42906 * 111.00619 * 204.91287 * 23 22 13
26 26 C 1.50701 * 109.46844 * 269.99944 * 4 3 2
27 27 C 1.30529 * 124.45206 * 124.69873 * 26 4 3
28 28 C 1.51095 * 111.10697 * 179.87715 * 27 26 4
29 29 C 1.54639 * 104.78111 * 343.93026 * 28 27 26
30 30 C 1.51106 * 124.44534 * 304.99508 * 26 4 3
31 31 H 1.08998 * 109.46890 * 60.00506 * 1 2 3
32 32 H 1.08999 * 109.46614 * 180.02562 * 1 2 3
33 33 H 1.08997 * 109.47465 * 300.00287 * 1 2 3
34 34 H 1.08997 * 109.47465 * 239.99713 * 2 1 3
35 35 H 1.08999 * 109.47141 * 119.99004 * 2 1 3
36 36 H 1.08998 * 109.47508 * 174.99818 * 6 4 3
37 37 H 1.09002 * 109.47337 * 55.00103 * 6 4 3
38 38 H 0.97001 * 119.99727 * 359.97438 * 9 7 6
39 39 H 1.09003 * 109.88536 * 338.86823 * 12 10 9
40 40 H 1.09005 * 109.88445 * 99.87296 * 12 10 9
41 41 H 0.96995 * 119.99897 * 180.02562 * 17 16 14
42 42 H 1.09001 * 110.36616 * 142.96574 * 22 13 12
43 43 H 1.09000 * 110.37086 * 265.28732 * 22 13 12
44 44 H 0.96701 * 113.99801 * 292.20118 * 25 23 22
45 45 H 1.08002 * 124.44218 * 359.97438 * 27 26 4
46 46 H 1.09001 * 110.52682 * 225.01654 * 28 27 26
47 47 H 1.09000 * 110.29636 * 102.72572 * 28 27 26
48 48 H 1.08993 * 111.03944 * 266.40970 * 29 28 27
49 49 H 1.09004 * 111.07171 * 142.48180 * 29 28 27
50 50 H 1.08996 * 110.38607 * 315.22637 * 30 26 4
51 51 H 1.08995 * 110.38629 * 77.49221 * 30 26 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4603 -0.0006
5 1 3.8632 0.6018 -0.5147
6 6 3.8403 2.7459 -0.7218
7 6 3.4471 2.6544 -2.1738
8 8 2.8942 1.6586 -2.5907
9 7 3.7108 3.6786 -3.0092
10 6 3.3230 3.5920 -4.4193
11 1 2.3735 3.0673 -4.5253
12 6 4.4255 2.8986 -5.2471
13 7 4.5199 3.6093 -6.5307
14 6 5.3948 3.3166 -7.5425
15 1 6.0943 2.5010 -7.4326
16 6 5.3828 4.0680 -8.7096
17 7 4.5300 5.0616 -8.8438
18 14 6.5767 3.6691 -10.0897
19 1 6.3472 2.2780 -10.5563
20 1 6.3629 4.6115 -11.2172
21 1 7.9698 3.8009 -9.5926
22 6 3.5161 4.6887 -6.5482
23 6 3.2478 5.0051 -5.0557
24 1 4.0203 5.6581 -4.6497
25 8 1.9507 5.5782 -4.8786
26 6 3.9321 1.4998 1.4201
27 6 4.8235 0.6827 1.9116
28 6 5.1055 0.9941 3.3629
29 6 4.5321 2.4137 3.5804
30 6 3.4642 2.4865 2.4644
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3632 -1.0277 0.0005
33 1 -0.3634 0.5139 0.8899
34 1 1.8934 -0.5139 -0.8899
35 1 1.8934 -0.5137 0.8901
36 1 4.9196 2.8775 -0.6453
37 1 3.3371 3.5965 -0.2621
38 1 4.1533 4.4748 -2.6758
39 1 5.3776 2.9576 -4.7197
40 1 4.1603 1.8550 -5.4172
41 1 4.5213 5.5864 -9.6595
42 1 3.9127 5.5674 -7.0568
43 1 2.6016 4.3486 -7.0342
44 1 1.8557 6.4617 -5.2601
45 1 5.2983 -0.1108 1.3535
46 1 6.1785 0.9846 3.5544
47 1 4.5990 0.2770 4.0089
48 1 5.3010 3.1726 3.4362
49 1 4.0751 2.5051 4.5658
50 1 3.4213 3.4916 2.0449
51 1 2.4877 2.1954 2.8513
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192989320.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:16:46
Heat of formation + Delta-G solvation = -115.856615 kcal
Electronic energy + Delta-G solvation = -30115.927722 eV
Core-core repulsion = 26015.253022 eV
Total energy + Delta-G solvation = -4100.674700 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.21736 -40.15122 -39.21278 -38.17813 -36.69991 -35.52055 -33.95129 -33.47813
-31.33474 -30.44287 -29.74175 -29.01975 -28.39506 -26.39173 -24.42762 -23.70311
-22.51863 -21.93144 -21.58215 -21.19143 -19.38934 -19.08692 -18.47033 -17.96697
-17.75595 -17.31797 -16.85612 -16.66669 -16.26095 -16.12515 -15.72610 -15.50843
-15.41931 -14.94997 -14.78428 -14.48064 -14.07561 -13.89143 -13.70230 -13.52828
-13.42765 -13.22278 -13.12821 -12.96028 -12.91468 -12.71475 -12.70623 -12.59604
-12.53407 -12.11252 -12.08664 -12.00333 -11.93603 -11.88393 -11.66669 -11.43841
-11.15643 -10.80295 -10.74463 -10.48629 -10.13372 -9.69171 -8.99092 -7.83135
-5.29831 1.16171 1.46379 1.49710 1.56077 1.69069 2.11406 2.46499
2.78841 3.07578 3.28064 3.53583 3.62315 3.70376 3.80772 3.90590
4.03008 4.06693 4.14123 4.17321 4.20859 4.24767 4.36467 4.40421
4.46040 4.49022 4.53501 4.56394 4.61359 4.77125 4.82805 4.85495
4.92183 4.94848 4.98696 5.03818 5.05459 5.08285 5.22856 5.25718
5.35945 5.42203 5.42557 5.48731 5.60465 5.66254 5.89070 6.19666
6.34577 6.58318 6.86160 7.03333 7.30265 7.67422 8.29984 9.18482
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.015977 B = 0.002363 C = 0.002287
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1752.048830 B =11847.048642 C =12238.257134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.062 3.938
3 O -0.385 6.385
4 C 0.155 3.845
5 H 0.057 0.943
6 C -0.124 4.124
7 C 0.511 3.489
8 O -0.576 6.576
9 N -0.706 5.706
10 C 0.158 3.842
11 H 0.070 0.930
12 C 0.133 3.867
13 N -0.619 5.619
14 C -0.246 4.246
15 H 0.080 0.920
16 C -0.062 4.062
17 N -0.947 5.947
18 Si 0.985 3.015
19 H -0.282 1.282
20 H -0.290 1.290
21 H -0.273 1.273
22 C 0.133 3.867
23 C 0.092 3.908
24 H 0.090 0.910
25 O -0.569 6.569
26 C -0.165 4.165
27 C -0.154 4.154
28 C -0.099 4.099
29 C -0.122 4.122
30 C -0.086 4.086
31 H 0.044 0.956
32 H 0.087 0.913
33 H 0.067 0.933
34 H 0.033 0.967
35 H 0.055 0.945
36 H 0.134 0.866
37 H 0.121 0.879
38 H 0.416 0.584
39 H 0.042 0.958
40 H 0.011 0.989
41 H 0.251 0.749
42 H 0.092 0.908
43 H -0.011 1.011
44 H 0.397 0.603
45 H 0.125 0.875
46 H 0.081 0.919
47 H 0.080 0.920
48 H 0.077 0.923
49 H 0.082 0.918
50 H 0.073 0.927
51 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.492 -2.592 26.812 26.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.014 4.014
3 O -0.305 6.305
4 C 0.096 3.904
5 H 0.075 0.925
6 C -0.164 4.164
7 C 0.300 3.700
8 O -0.455 6.455
9 N -0.358 5.358
10 C 0.051 3.949
11 H 0.088 0.912
12 C 0.007 3.993
13 N -0.347 5.347
14 C -0.375 4.375
15 H 0.098 0.902
16 C -0.254 4.254
17 N -0.596 5.596
18 Si 0.812 3.188
19 H -0.209 1.209
20 H -0.216 1.216
21 H -0.198 1.198
22 C 0.007 3.993
23 C 0.031 3.969
24 H 0.107 0.893
25 O -0.376 6.376
26 C -0.166 4.166
27 C -0.172 4.172
28 C -0.136 4.136
29 C -0.159 4.159
30 C -0.123 4.123
31 H 0.063 0.937
32 H 0.106 0.894
33 H 0.086 0.914
34 H 0.051 0.949
35 H 0.074 0.926
36 H 0.152 0.848
37 H 0.139 0.861
38 H 0.253 0.747
39 H 0.059 0.941
40 H 0.029 0.971
41 H 0.061 0.939
42 H 0.110 0.890
43 H 0.007 0.993
44 H 0.247 0.753
45 H 0.142 0.858
46 H 0.100 0.900
47 H 0.098 0.902
48 H 0.096 0.904
49 H 0.101 0.899
50 H 0.092 0.908
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -1.078 -3.624 26.640 26.907
hybrid contribution 0.680 0.138 -1.650 1.790
sum -0.397 -3.486 24.989 25.234
Atomic orbital electron populations
1.21709 0.93114 1.03061 1.02305 1.22457 0.96099 0.83454 0.99424
1.87876 1.20533 1.27212 1.94869 1.20383 0.81691 0.97016 0.91279
0.92536 1.21816 1.05056 1.00416 0.89077 1.21231 0.77494 0.82170
0.89154 1.90687 1.43414 1.32502 1.78875 1.45796 1.61545 1.20560
1.07914 1.21465 0.96806 0.95721 0.80879 0.91229 1.21658 0.96528
0.94362 0.86784 1.44547 1.40092 1.35535 1.14502 1.19410 1.11017
1.12823 0.94207 0.90172 1.25653 1.01180 0.98266 1.00334 1.69955
1.39594 1.22699 1.27342 0.85069 0.78549 0.77047 0.78139 1.20863
1.21557 1.19833 1.22372 0.90296 0.93957 0.92627 1.23252 0.85258
0.92799 0.95544 0.89275 1.86397 1.31743 1.37914 1.81544 1.22403
0.99018 0.99966 0.95189 1.23447 0.97920 0.98574 0.97274 1.21378
1.01972 0.97240 0.92976 1.22476 0.97986 0.96791 0.98656 1.21197
0.99006 0.98261 0.93863 0.93656 0.89445 0.91417 0.94887 0.92642
0.84804 0.86126 0.74686 0.94054 0.97144 0.93927 0.89045 0.99332
0.75275 0.85750 0.90036 0.90193 0.90396 0.89943 0.90799 0.91332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.01 10.28 71.98 0.74 -2.27 16
2 C 0.06 1.49 6.46 71.98 0.46 1.95 16
3 O -0.39 -10.36 9.19 -135.21 -1.24 -11.60 16
4 C 0.15 3.51 2.05 29.85 0.06 3.57 16
5 H 0.06 1.45 7.52 -2.38 -0.02 1.43 16
6 C -0.12 -2.54 5.34 29.85 0.16 -2.38 16
7 C 0.51 15.47 7.71 87.66 0.68 16.14 16
8 O -0.58 -22.78 15.14 10.73 0.16 -22.62 16
9 N -0.71 -20.64 5.13 -436.92 -2.24 -22.88 16
10 C 0.16 6.08 2.97 46.18 0.14 6.22 16
11 H 0.07 3.12 7.69 -2.39 -0.02 3.10 16
12 C 0.13 5.98 6.99 86.73 0.61 6.59 16
13 N -0.62 -32.62 3.39 -692.00 -2.35 -34.97 16
14 C -0.25 -13.93 10.27 84.03 0.86 -13.07 16
15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16
16 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16
17 N -0.95 -55.18 10.09 21.65 0.22 -54.97 16
18 Si 0.98 45.21 29.55 68.60 2.03 47.24 16
19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
20 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16
21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
22 C 0.13 6.56 5.62 86.86 0.49 7.04 16
23 C 0.09 3.41 4.04 31.98 0.13 3.54 16
24 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16
25 O -0.57 -19.08 13.47 -148.98 -2.01 -21.08 16
26 C -0.17 -2.90 5.03 -15.87 -0.08 -2.98 16
27 C -0.15 -2.36 10.55 26.26 0.28 -2.09 16
28 C -0.10 -1.13 6.81 30.53 0.21 -0.92 16
29 C -0.12 -1.32 7.19 31.71 0.23 -1.09 16
30 C -0.09 -1.27 6.70 30.54 0.20 -1.06 16
31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16
35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.13 1.96 8.14 -2.39 -0.02 1.95 16
37 H 0.12 2.04 7.81 -2.39 -0.02 2.03 16
38 H 0.42 9.05 8.52 -92.71 -0.79 8.26 16
39 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16
40 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16
41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16
42 H 0.09 4.89 5.87 -2.39 -0.01 4.87 16
43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16
44 H 0.40 9.80 9.12 -74.06 -0.68 9.12 16
45 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16
46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
50 H 0.07 1.02 7.79 -2.39 -0.02 1.00 16
51 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
Total: -1.00 -74.61 411.14 -0.34 -74.96
By element:
Atomic # 1 Polarization: 30.26 SS G_CDS: -0.54 Total: 29.72 kcal
Atomic # 6 Polarization: 10.58 SS G_CDS: 5.63 Total: 16.21 kcal
Atomic # 7 Polarization: -108.44 SS G_CDS: -4.37 Total: -112.81 kcal
Atomic # 8 Polarization: -52.22 SS G_CDS: -3.09 Total: -55.31 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal
Total: -74.61 -0.34 -74.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192989320.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.900 kcal
(2) G-P(sol) polarization free energy of solvation -74.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds