Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 7 7 C 1.50694 * 109.47234 * 65.00508 * 6 4 3 8 8 O 1.21279 * 119.99869 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00443 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.63649 * 36.68895 * 10 9 7 12 12 C 1.54314 * 110.72100 * 273.54587 * 10 9 7 13 13 N 1.47021 * 107.27327 * 219.44571 * 12 10 9 14 14 C 1.36940 * 125.65153 * 178.97918 * 13 12 10 15 15 H 1.08001 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00309 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99501 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47095 * 60.00295 * 18 16 14 20 20 H 1.48502 * 109.46938 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47307 * 299.99974 * 18 16 14 22 22 C 1.47428 * 108.70118 * 358.93782 * 13 12 10 23 23 C 1.54905 * 104.83077 * 24.13158 * 22 13 12 24 24 H 1.09000 * 111.00564 * 81.06256 * 23 22 13 25 25 O 1.42898 * 111.00321 * 204.91528 * 23 22 13 26 26 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 27 27 C 1.30518 * 124.44955 * 235.02400 * 26 4 3 28 28 C 1.51104 * 111.10819 * 179.97438 * 27 26 4 29 29 C 1.54636 * 104.71982 * 16.43453 * 28 27 26 30 30 C 1.51103 * 124.44463 * 54.72382 * 26 4 3 31 31 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 32 32 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 36 36 H 1.09007 * 109.46514 * 185.00179 * 6 4 3 37 37 H 1.08999 * 109.47336 * 304.99962 * 6 4 3 38 38 H 0.97004 * 119.99468 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.88531 * 338.85962 * 12 10 9 40 40 H 1.09002 * 109.88716 * 99.87002 * 12 10 9 41 41 H 0.97001 * 119.99237 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.36581 * 142.97123 * 22 13 12 43 43 H 1.09003 * 110.36720 * 265.29496 * 22 13 12 44 44 H 0.96704 * 114.00093 * 292.19393 * 25 23 22 45 45 H 1.08004 * 124.45005 * 359.97438 * 27 26 4 46 46 H 1.09001 * 110.38671 * 135.24281 * 28 27 26 47 47 H 1.09001 * 110.38358 * 257.62742 * 28 27 26 48 48 H 1.09001 * 111.03838 * 93.40634 * 29 28 27 49 49 H 1.09006 * 111.03580 * 217.33096 * 29 28 27 50 50 H 1.09000 * 110.38796 * 282.39113 * 30 26 4 51 51 H 1.09003 * 110.38886 * 44.77568 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.8402 2.7459 0.7219 7 6 3.4471 2.6544 2.1737 8 8 2.8935 1.6590 2.5905 9 7 3.7106 3.6786 3.0092 10 6 3.3279 3.5899 4.4205 11 1 3.4611 2.5737 4.7915 12 6 1.8713 4.0581 4.6217 13 7 1.8298 4.8307 5.8718 14 6 0.7213 5.4384 6.3982 15 1 -0.2264 5.3713 5.8845 16 6 0.8155 6.1407 7.5918 17 7 1.9704 6.2220 8.2180 18 14 -0.6966 6.9702 8.3093 19 1 -1.7418 5.9496 8.5752 20 1 -0.3332 7.6485 9.5794 21 1 -1.2167 7.9716 7.3440 22 6 3.1792 4.8419 6.4656 23 6 4.1388 4.6007 5.2737 24 1 4.3163 5.5238 4.7220 25 8 5.3702 4.0259 5.7158 26 6 3.9322 1.4996 -1.4201 27 6 4.8272 0.6858 -1.9101 28 6 5.1054 0.9938 -3.3630 29 6 4.5319 2.4133 -3.5805 30 6 3.4599 2.4825 -2.4660 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.9196 2.8774 0.6453 37 1 3.3371 3.5964 0.2620 38 1 4.1537 4.4746 2.6759 39 1 1.5657 4.6882 3.7863 40 1 1.2109 3.1941 4.6950 41 1 2.0362 6.7125 9.0523 42 1 3.3826 5.8083 6.9269 43 1 3.2774 4.0420 7.1995 44 1 5.9114 4.6206 6.2529 45 1 5.3061 -0.1042 -1.3506 46 1 6.1784 0.9843 -3.5544 47 1 4.5974 0.2762 -4.0072 48 1 5.3009 3.1723 -3.4365 49 1 4.0749 2.5039 -4.5659 50 1 2.4856 2.1852 -2.8541 51 1 3.4124 3.4881 -2.0482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192989321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = -92.337286 kcal Electronic energy + Delta-G solvation = -30172.502597 eV Core-core repulsion = 26072.847772 eV Total energy + Delta-G solvation = -4099.654825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.03817 -39.09241 -37.82754 -37.23020 -35.06284 -33.94614 -32.92374 -31.68667 -30.35639 -29.33632 -28.50513 -27.98860 -26.81695 -24.56589 -23.36021 -22.78424 -21.11589 -20.71820 -20.26267 -19.81090 -18.58300 -17.30915 -17.01986 -16.86994 -16.65676 -15.98462 -15.71981 -15.55388 -14.98745 -14.87567 -14.55340 -14.15566 -13.91616 -13.60319 -13.23327 -12.98818 -12.95597 -12.86350 -12.60064 -12.32407 -12.17326 -12.08980 -11.95611 -11.75944 -11.74456 -11.50607 -11.41067 -11.32684 -11.22646 -11.18662 -10.97008 -10.81200 -10.80813 -10.20564 -9.90630 -9.73697 -9.67897 -9.56047 -9.24061 -9.01981 -8.70772 -8.69671 -6.90529 -5.71105 -3.13265 1.85565 2.91948 3.36072 3.39763 3.43340 3.45129 3.69860 4.28664 4.35979 4.41839 4.62873 4.74725 4.80368 4.84710 4.93236 5.09584 5.12267 5.21521 5.27198 5.33590 5.38321 5.42066 5.43736 5.44228 5.49790 5.57076 5.63935 5.64642 5.68772 5.71614 5.75741 5.79637 5.89373 5.95488 5.97639 6.12104 6.13162 6.23141 6.26340 6.54911 6.58035 6.72649 6.98066 7.26608 7.32468 7.53801 7.70305 7.80163 8.10044 8.26618 8.51662 9.15268 9.75716 10.38452 11.33200 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.002460 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.864760 B =11379.094313 C =12196.764165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.364 6.364 4 C 0.157 3.843 5 H 0.073 0.927 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.533 6.533 9 N -0.718 5.718 10 C 0.144 3.856 11 H 0.097 0.903 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.221 4.221 15 H 0.079 0.921 16 C -0.012 4.012 17 N -0.926 5.926 18 Si 0.918 3.082 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.061 0.939 25 O -0.566 6.566 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.098 4.098 29 C -0.126 4.126 30 C -0.086 4.086 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.397 0.603 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.254 0.746 42 H 0.112 0.888 43 H 0.025 0.975 44 H 0.377 0.623 45 H 0.123 0.877 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -7.886 -21.979 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.099 3.901 5 H 0.091 0.909 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.409 6.409 9 N -0.369 5.369 10 C 0.039 3.961 11 H 0.115 0.885 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.350 4.350 15 H 0.097 0.903 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.004 3.996 23 C 0.006 3.994 24 H 0.079 0.921 25 O -0.371 6.371 26 C -0.152 4.152 27 C -0.179 4.179 28 C -0.135 4.135 29 C -0.164 4.164 30 C -0.123 4.123 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.043 0.957 44 H 0.224 0.776 45 H 0.141 0.859 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.466 -8.846 -21.822 24.702 hybrid contribution -0.184 1.012 0.580 1.181 sum 7.282 -7.834 -21.242 23.783 Atomic orbital electron populations 1.21712 0.93991 1.01888 1.03059 1.22398 0.95343 0.83865 0.99621 1.87928 1.19257 1.26469 1.94677 1.20333 0.82572 0.97391 0.89830 0.90874 1.21769 1.03052 0.99925 0.92793 1.20397 0.78707 0.83109 0.87633 1.90693 1.41439 1.31086 1.77677 1.45990 1.61526 1.19524 1.09837 1.21958 0.94533 1.00657 0.78930 0.88454 1.21614 0.92921 0.94774 0.90283 1.44293 1.06429 1.59995 1.22098 1.19069 0.87645 1.24694 1.03544 0.90266 1.24801 0.97514 1.00978 0.97389 1.69733 1.22639 1.46718 1.18334 0.86094 0.81676 0.79173 0.78229 1.21110 1.21530 1.21092 1.22539 0.82414 1.03720 0.90916 1.23641 0.84603 0.93724 0.97388 0.92073 1.86411 1.32645 1.44784 1.73256 1.22556 0.97990 0.98564 0.96125 1.23197 0.98958 0.99361 0.96342 1.21330 1.01072 0.96939 0.94190 1.22501 0.98312 0.96810 0.98766 1.21217 0.98825 0.98607 0.93695 0.91518 0.92303 0.91468 0.94232 0.92923 0.87836 0.88015 0.76936 0.95228 0.94912 0.93576 0.87006 0.95725 0.77630 0.85943 0.91224 0.90809 0.91068 0.91083 0.90515 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.78 6.46 37.16 0.24 1.02 16 3 O -0.36 -5.01 9.19 -49.66 -0.46 -5.47 16 4 C 0.16 1.84 2.05 -27.88 -0.06 1.79 16 5 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 6 C -0.14 -1.51 5.36 -27.88 -0.15 -1.66 16 7 C 0.52 7.98 7.71 -10.99 -0.08 7.90 16 8 O -0.53 -10.28 15.14 -8.87 -0.13 -10.42 16 9 N -0.72 -11.00 5.13 -52.04 -0.27 -11.27 16 10 C 0.14 2.78 2.97 -66.10 -0.20 2.58 16 11 H 0.10 2.09 7.69 -51.93 -0.40 1.69 16 12 C 0.13 2.93 6.99 -3.07 -0.02 2.91 16 13 N -0.60 -15.58 3.39 -170.08 -0.58 -16.16 16 14 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.93 -26.56 10.09 55.49 0.56 -26.00 16 18 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.13 3.12 5.62 -2.53 -0.01 3.11 16 23 C 0.07 1.26 4.04 -24.58 -0.10 1.16 16 24 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 25 O -0.57 -9.71 13.47 -35.23 -0.47 -10.18 16 26 C -0.15 -1.46 5.03 -100.73 -0.51 -1.97 16 27 C -0.16 -1.36 10.55 -35.69 -0.38 -1.74 16 28 C -0.10 -0.69 6.81 -26.83 -0.18 -0.87 16 29 C -0.13 -0.87 7.20 -24.93 -0.18 -1.05 16 30 C -0.09 -0.74 6.71 -26.74 -0.18 -0.92 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.03 7.82 -51.93 -0.41 0.62 16 38 H 0.40 4.90 8.52 -40.82 -0.35 4.55 16 39 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 42 H 0.11 2.92 5.88 -51.93 -0.31 2.62 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.38 4.89 9.12 45.56 0.42 5.31 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -33.48 411.20 -9.99 -43.47 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.13 Total: 8.61 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.68 Total: 4.21 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.28 Total: -53.43 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.07 Total: -26.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.48 -9.99 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.867 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds