Wall clock time and date at job start Tue Mar 31 2020 22:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 7 7 C 1.50694 * 109.47234 * 65.00508 * 6 4 3 8 8 O 1.21279 * 119.99869 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00443 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.63649 * 36.68895 * 10 9 7 12 12 C 1.54314 * 110.72100 * 273.54587 * 10 9 7 13 13 N 1.47021 * 107.27327 * 219.44571 * 12 10 9 14 14 C 1.36940 * 125.65153 * 178.97918 * 13 12 10 15 15 H 1.08001 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00309 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99501 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47095 * 60.00295 * 18 16 14 20 20 H 1.48502 * 109.46938 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47307 * 299.99974 * 18 16 14 22 22 C 1.47428 * 108.70118 * 358.93782 * 13 12 10 23 23 C 1.54905 * 104.83077 * 24.13158 * 22 13 12 24 24 H 1.09000 * 111.00564 * 81.06256 * 23 22 13 25 25 O 1.42898 * 111.00321 * 204.91528 * 23 22 13 26 26 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 27 27 C 1.30518 * 124.44955 * 235.02400 * 26 4 3 28 28 C 1.51104 * 111.10819 * 179.97438 * 27 26 4 29 29 C 1.54636 * 104.71982 * 16.43453 * 28 27 26 30 30 C 1.51103 * 124.44463 * 54.72382 * 26 4 3 31 31 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 32 32 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 36 36 H 1.09007 * 109.46514 * 185.00179 * 6 4 3 37 37 H 1.08999 * 109.47336 * 304.99962 * 6 4 3 38 38 H 0.97004 * 119.99468 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.88531 * 338.85962 * 12 10 9 40 40 H 1.09002 * 109.88716 * 99.87002 * 12 10 9 41 41 H 0.97001 * 119.99237 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.36581 * 142.97123 * 22 13 12 43 43 H 1.09003 * 110.36720 * 265.29496 * 22 13 12 44 44 H 0.96704 * 114.00093 * 292.19393 * 25 23 22 45 45 H 1.08004 * 124.45005 * 359.97438 * 27 26 4 46 46 H 1.09001 * 110.38671 * 135.24281 * 28 27 26 47 47 H 1.09001 * 110.38358 * 257.62742 * 28 27 26 48 48 H 1.09001 * 111.03838 * 93.40634 * 29 28 27 49 49 H 1.09006 * 111.03580 * 217.33096 * 29 28 27 50 50 H 1.09000 * 110.38796 * 282.39113 * 30 26 4 51 51 H 1.09003 * 110.38886 * 44.77568 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.8402 2.7459 0.7219 7 6 3.4471 2.6544 2.1737 8 8 2.8935 1.6590 2.5905 9 7 3.7106 3.6786 3.0092 10 6 3.3279 3.5899 4.4205 11 1 3.4611 2.5737 4.7915 12 6 1.8713 4.0581 4.6217 13 7 1.8298 4.8307 5.8718 14 6 0.7213 5.4384 6.3982 15 1 -0.2264 5.3713 5.8845 16 6 0.8155 6.1407 7.5918 17 7 1.9704 6.2220 8.2180 18 14 -0.6966 6.9702 8.3093 19 1 -1.7418 5.9496 8.5752 20 1 -0.3332 7.6485 9.5794 21 1 -1.2167 7.9716 7.3440 22 6 3.1792 4.8419 6.4656 23 6 4.1388 4.6007 5.2737 24 1 4.3163 5.5238 4.7220 25 8 5.3702 4.0259 5.7158 26 6 3.9322 1.4996 -1.4201 27 6 4.8272 0.6858 -1.9101 28 6 5.1054 0.9938 -3.3630 29 6 4.5319 2.4133 -3.5805 30 6 3.4599 2.4825 -2.4660 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.9196 2.8774 0.6453 37 1 3.3371 3.5964 0.2620 38 1 4.1537 4.4746 2.6759 39 1 1.5657 4.6882 3.7863 40 1 1.2109 3.1941 4.6950 41 1 2.0362 6.7125 9.0523 42 1 3.3826 5.8083 6.9269 43 1 3.2774 4.0420 7.1995 44 1 5.9114 4.6206 6.2529 45 1 5.3061 -0.1042 -1.3506 46 1 6.1784 0.9843 -3.5544 47 1 4.5974 0.2762 -4.0072 48 1 5.3009 3.1723 -3.4365 49 1 4.0749 2.5039 -4.5659 50 1 2.4856 2.1852 -2.8541 51 1 3.4124 3.4881 -2.0482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192989321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:50 Heat of formation + Delta-G solvation = -115.700335 kcal Electronic energy + Delta-G solvation = -30173.515695 eV Core-core repulsion = 26072.847772 eV Total energy + Delta-G solvation = -4100.667923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21683 -40.14857 -39.21166 -38.17563 -36.69710 -35.52033 -33.94994 -33.47754 -31.33639 -30.44014 -29.73367 -29.01487 -28.39306 -26.39477 -24.42595 -23.70441 -22.51588 -21.92727 -21.59119 -21.18824 -19.38307 -19.08718 -18.46162 -17.96085 -17.75002 -17.33681 -16.86401 -16.66319 -16.25801 -16.11964 -15.67442 -15.58344 -15.34709 -14.99530 -14.78908 -14.47787 -14.02173 -13.94438 -13.70513 -13.53570 -13.39427 -13.21492 -13.15848 -12.94576 -12.91678 -12.71944 -12.70986 -12.59911 -12.53151 -12.11007 -12.08513 -12.00548 -11.93701 -11.87608 -11.66191 -11.43979 -11.15575 -10.80454 -10.74578 -10.47749 -10.13730 -9.69006 -8.99136 -7.83432 -5.29948 1.16661 1.46107 1.49538 1.55843 1.68969 2.11696 2.46367 2.79555 3.07286 3.27728 3.53702 3.62417 3.70838 3.80992 3.89006 4.03038 4.06794 4.14171 4.17726 4.20690 4.25059 4.36421 4.40963 4.45876 4.48846 4.53546 4.56438 4.61181 4.77427 4.83336 4.85360 4.92238 4.94648 4.98379 5.03533 5.05400 5.08049 5.22720 5.25662 5.35959 5.42076 5.42564 5.48695 5.60654 5.66165 5.89669 6.19685 6.35643 6.58320 6.86206 7.03460 7.30275 7.67240 8.29730 9.18163 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.002460 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.864760 B =11379.094313 C =12196.764165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 O -0.387 6.387 4 C 0.155 3.845 5 H 0.059 0.941 6 C -0.124 4.124 7 C 0.511 3.489 8 O -0.576 6.576 9 N -0.706 5.706 10 C 0.158 3.842 11 H 0.072 0.928 12 C 0.134 3.866 13 N -0.619 5.619 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.984 3.016 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.133 3.867 23 C 0.093 3.907 24 H 0.089 0.911 25 O -0.567 6.567 26 C -0.166 4.166 27 C -0.152 4.152 28 C -0.099 4.099 29 C -0.122 4.122 30 C -0.087 4.087 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.416 0.584 39 H 0.038 0.962 40 H 0.009 0.991 41 H 0.251 0.749 42 H 0.092 0.908 43 H -0.010 1.010 44 H 0.397 0.603 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -7.100 -24.362 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 O -0.306 6.306 4 C 0.096 3.904 5 H 0.077 0.923 6 C -0.164 4.164 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.358 5.358 10 C 0.052 3.948 11 H 0.090 0.910 12 C 0.007 3.993 13 N -0.347 5.347 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.812 3.188 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C 0.007 3.993 23 C 0.032 3.968 24 H 0.107 0.893 25 O -0.375 6.375 26 C -0.166 4.166 27 C -0.170 4.170 28 C -0.136 4.136 29 C -0.159 4.159 30 C -0.124 4.124 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.008 0.992 44 H 0.248 0.752 45 H 0.144 0.856 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.622 -8.040 -24.239 26.954 hybrid contribution -0.512 0.683 1.345 1.593 sum 8.110 -7.357 -22.894 25.377 Atomic orbital electron populations 1.21716 0.93341 1.03039 1.02204 1.22442 0.95931 0.83458 0.99482 1.87890 1.20630 1.27228 1.94867 1.20398 0.81650 0.97034 0.91291 0.92323 1.21821 1.05119 1.00391 0.89045 1.21231 0.77512 0.82111 0.89194 1.90685 1.43278 1.32791 1.78704 1.45802 1.61435 1.20562 1.08040 1.21459 0.92729 0.99152 0.81463 0.90990 1.21643 0.94867 0.93553 0.89245 1.44552 1.06766 1.60201 1.23149 1.19401 0.88540 1.25292 1.04270 0.90345 1.25644 1.00454 1.01597 0.97668 1.69956 1.24251 1.47014 1.18310 0.85074 0.78222 0.78154 0.77392 1.20879 1.21445 1.19884 1.22381 0.83229 1.01228 0.92435 1.23231 0.84103 0.94505 0.94911 0.89316 1.86383 1.31747 1.45689 1.73675 1.22390 0.99015 1.00028 0.95177 1.23446 0.97847 0.98529 0.97226 1.21384 1.02009 0.97157 0.93004 1.22507 0.97916 0.96905 0.98592 1.21232 0.98964 0.98293 0.93960 0.93852 0.91516 0.89391 0.92535 0.94765 0.84614 0.86362 0.74694 0.94439 0.97318 0.93906 0.89048 0.99236 0.75235 0.85552 0.89925 0.90201 0.90319 0.90077 0.91457 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.06 1.55 6.46 71.98 0.46 2.01 16 3 O -0.39 -10.62 9.19 -135.19 -1.24 -11.86 16 4 C 0.15 3.49 2.05 29.85 0.06 3.55 16 5 H 0.06 1.46 7.52 -2.39 -0.02 1.45 16 6 C -0.12 -2.54 5.36 29.85 0.16 -2.38 16 7 C 0.51 15.46 7.71 87.66 0.68 16.14 16 8 O -0.58 -22.75 15.14 10.77 0.16 -22.59 16 9 N -0.71 -20.66 5.13 -436.95 -2.24 -22.90 16 10 C 0.16 6.11 2.97 46.18 0.14 6.25 16 11 H 0.07 3.18 7.69 -2.39 -0.02 3.16 16 12 C 0.13 6.12 6.99 86.73 0.61 6.72 16 13 N -0.62 -32.93 3.39 -692.00 -2.35 -35.28 16 14 C -0.25 -14.11 10.27 84.03 0.86 -13.25 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 17 N -0.95 -55.27 10.09 21.65 0.22 -55.05 16 18 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.13 6.54 5.62 86.85 0.49 7.03 16 23 C 0.09 3.43 4.04 31.99 0.13 3.56 16 24 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 25 O -0.57 -18.57 13.47 -148.98 -2.01 -20.58 16 26 C -0.17 -2.89 5.03 -15.86 -0.08 -2.97 16 27 C -0.15 -2.26 10.55 26.27 0.28 -1.98 16 28 C -0.10 -1.10 6.81 30.53 0.21 -0.89 16 29 C -0.12 -1.33 7.20 31.76 0.23 -1.10 16 30 C -0.09 -1.32 6.71 30.59 0.21 -1.12 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.12 2.08 7.82 -2.39 -0.02 2.06 16 38 H 0.42 9.06 8.52 -92.71 -0.79 8.28 16 39 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.09 4.88 5.88 -2.39 -0.01 4.87 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.40 9.51 9.12 -74.05 -0.68 8.84 16 45 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.07 1.05 7.82 -2.39 -0.02 1.03 16 Total: -1.00 -74.91 411.20 -0.34 -75.25 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.54 Total: 29.29 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 5.63 Total: 16.14 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.37 Total: -113.23 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -3.09 Total: -55.03 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.91 -0.34 -75.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.451 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds