Wall clock time and date at job start Tue Mar 31 2020 22:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50703 * 119.99787 * 2 1
4 4 C 1.50704 * 120.00366 * 180.02562 * 2 1 3
5 5 H 1.09000 * 109.46580 * 5.00335 * 4 2 1
6 6 C 1.52996 * 109.47272 * 244.99738 * 4 2 1
7 7 C 1.50693 * 109.47162 * 174.99906 * 6 4 2
8 8 O 1.21287 * 120.00212 * 0.02562 * 7 6 4
9 9 N 1.34783 * 120.00299 * 180.02562 * 7 6 4
10 10 C 1.47039 * 120.03392 * 0.02562 * 9 7 6
11 11 C 1.53574 * 107.29953 * 130.37986 * 10 9 7
12 12 O 1.42615 * 108.29558 * 55.89800 * 11 10 9
13 13 C 1.42785 * 115.84137 * 295.39967 * 12 11 10
14 14 H 1.08998 * 111.86822 * 290.75635 * 13 12 11
15 15 C 1.54894 * 107.17263 * 166.91509 * 13 12 11
16 16 N 1.47067 * 107.20390 * 266.67837 * 15 13 12
17 17 C 1.36939 * 125.64351 * 180.22009 * 16 15 13
18 18 H 1.07996 * 120.00265 * 180.02562 * 17 16 15
19 19 C 1.38817 * 119.99945 * 0.02848 * 17 16 15
20 20 N 1.31619 * 119.99840 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 119.99842 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47482 * 359.97438 * 21 19 17
23 23 H 1.48508 * 109.47078 * 119.99790 * 21 19 17
24 24 H 1.48495 * 109.47060 * 239.99459 * 21 19 17
25 25 C 1.47613 * 108.71354 * 0.24580 * 16 15 13
26 26 C 1.45554 * 120.06217 * 179.87780 * 9 7 6
27 27 H 1.09005 * 110.85285 * 345.98593 * 26 9 7
28 28 O 1.42897 * 109.46920 * 124.99809 * 4 2 1
29 29 C 1.42905 * 114.00114 * 270.00086 * 28 4 2
30 30 C 1.53003 * 109.47189 * 180.02562 * 29 28 4
31 31 H 1.08004 * 119.99613 * 179.97438 * 1 2 3
32 32 H 1.08001 * 120.00275 * 359.97438 * 1 2 3
33 33 H 1.09002 * 109.47238 * 179.97438 * 3 2 1
34 34 H 1.08997 * 109.47037 * 300.00421 * 3 2 1
35 35 H 1.09000 * 109.46748 * 60.00348 * 3 2 1
36 36 H 1.09003 * 109.46877 * 55.00359 * 6 4 2
37 37 H 1.08998 * 109.47333 * 295.00530 * 6 4 2
38 38 H 1.09002 * 109.90625 * 10.90522 * 10 9 7
39 39 H 1.09001 * 109.90186 * 249.84439 * 10 9 7
40 40 H 1.08995 * 109.70164 * 175.60348 * 11 10 9
41 41 H 1.09004 * 109.69684 * 296.16032 * 11 10 9
42 42 H 1.08996 * 109.89344 * 26.07724 * 15 13 12
43 43 H 1.09000 * 109.89701 * 147.28138 * 15 13 12
44 44 H 0.96999 * 120.00018 * 180.02562 * 20 19 17
45 45 H 1.09004 * 110.41601 * 217.70257 * 25 16 15
46 46 H 1.08992 * 110.52501 * 95.28410 * 25 16 15
47 47 H 1.08995 * 109.46986 * 300.00069 * 29 28 4
48 48 H 1.09003 * 109.46706 * 60.00310 * 29 28 4
49 49 H 1.09004 * 109.47142 * 300.00052 * 30 29 28
50 50 H 1.08995 * 109.46799 * 59.99944 * 30 29 28
51 51 H 1.08997 * 109.46760 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 6 2.0636 -1.3051 -0.0006
5 1 1.3586 -2.1315 -0.0906
6 6 2.8466 -1.4425 1.3066
7 6 3.5010 -2.7988 1.3600
8 8 3.3559 -3.5787 0.4425
9 7 4.2477 -3.1454 2.4272
10 6 4.4237 -2.2008 3.5402
11 6 4.1131 -2.9610 4.8379
12 8 4.9570 -4.1091 4.8972
13 6 4.7440 -5.0911 3.8827
14 1 3.7907 -5.6045 4.0084
15 6 5.9513 -6.0607 3.9241
16 7 6.9378 -5.5688 2.9506
17 6 8.1481 -6.1488 2.6785
18 1 8.8048 -5.7083 1.9429
19 6 8.5309 -7.3029 3.3482
20 7 7.7307 -7.8395 4.2449
21 14 10.1821 -8.0936 2.9775
22 1 10.8883 -7.3016 1.9386
23 1 11.0023 -8.1304 4.2150
24 1 9.9685 -9.4777 2.4840
25 6 6.4076 -4.3462 2.3157
26 6 4.8782 -4.4562 2.4813
27 1 4.4610 -5.1190 1.7232
28 8 2.9709 -1.3306 -1.1042
29 6 2.4139 -1.8755 -2.3022
30 6 3.4683 -1.8539 -3.4107
31 1 -0.5400 -0.9354 -0.0004
32 1 -0.5400 0.9353 0.0004
33 1 3.1351 1.1060 0.0005
34 1 1.8000 1.8767 -0.8899
35 1 1.8001 1.8766 0.8900
36 1 2.1658 -1.3341 2.1510
37 1 3.6117 -0.6677 1.3551
38 1 3.7363 -1.3624 3.4277
39 1 5.4513 -1.8378 3.5598
40 1 4.3071 -2.3177 5.6961
41 1 3.0683 -3.2718 4.8405
42 1 6.3874 -6.0675 4.9230
43 1 5.6295 -7.0656 3.6506
44 1 7.9984 -8.6457 4.7131
45 1 6.6751 -4.3197 1.2593
46 1 6.7824 -3.4581 2.8245
47 1 2.0982 -2.9029 -2.1215
48 1 1.5537 -1.2792 -2.6067
49 1 3.7844 -0.8265 -3.5915
50 1 4.3281 -2.4503 -3.1058
51 1 3.0435 -2.2698 -4.3242
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001218032551.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:24
Heat of formation + Delta-G solvation = -68.055019 kcal
Electronic energy + Delta-G solvation = -31226.175647 eV
Core-core repulsion = 27127.573780 eV
Total energy + Delta-G solvation = -4098.601867 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.53086 -39.10165 -37.84328 -35.76366 -35.35810 -34.61780 -32.37141 -31.71478
-30.23891 -29.76960 -27.74213 -27.63884 -27.28201 -24.76705 -23.70734 -23.25557
-22.79440 -20.52850 -20.26187 -19.09906 -18.47743 -17.29439 -17.01116 -16.95070
-16.47820 -15.83584 -15.51450 -15.12540 -15.02369 -14.64488 -14.57493 -14.19767
-14.14711 -13.88184 -13.57714 -13.42767 -13.34710 -12.88147 -12.72390 -12.45896
-12.34891 -12.13857 -12.00915 -11.93556 -11.75922 -11.61718 -11.24857 -11.18323
-11.06053 -10.97049 -10.92106 -10.76931 -10.52267 -10.08951 -9.90119 -9.78546
-9.62615 -9.60248 -9.54600 -9.38474 -8.64215 -8.21888 -6.82894 -5.70350
-3.03387 1.81422 2.76066 3.01768 3.42955 3.48396 3.50953 3.61807
4.12182 4.29183 4.52802 4.63732 4.71097 4.78167 4.87891 5.02185
5.04690 5.10409 5.20082 5.20429 5.26917 5.30812 5.31340 5.37219
5.40029 5.41234 5.54442 5.55363 5.64687 5.67001 5.70390 5.73132
5.74134 5.86044 5.87954 5.91666 6.07171 6.08809 6.23727 6.24217
6.45011 6.58229 6.66693 6.87151 7.19414 7.32205 7.49702 7.55766
7.78138 7.88240 8.23630 8.33022 9.21857 9.81683 10.46557 11.42273
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.015682 B = 0.002984 C = 0.002642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1785.045258 B = 9380.430284 C =10597.185773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.144 4.144
3 C -0.115 4.115
4 C 0.142 3.858
5 H 0.072 0.928
6 C -0.134 4.134
7 C 0.516 3.484
8 O -0.531 6.531
9 N -0.600 5.600
10 C 0.071 3.929
11 C 0.047 3.953
12 O -0.365 6.365
13 C 0.056 3.944
14 H 0.070 0.930
15 C 0.189 3.811
16 N -0.601 5.601
17 C -0.224 4.224
18 H 0.080 0.920
19 C -0.009 4.009
20 N -0.924 5.924
21 Si 0.914 3.086
22 H -0.280 1.280
23 H -0.290 1.290
24 H -0.290 1.290
25 C 0.137 3.863
26 C 0.099 3.901
27 H 0.109 0.891
28 O -0.365 6.365
29 C 0.064 3.936
30 C -0.149 4.149
31 H 0.098 0.902
32 H 0.101 0.899
33 H 0.068 0.932
34 H 0.064 0.936
35 H 0.064 0.936
36 H 0.103 0.897
37 H 0.102 0.898
38 H 0.089 0.911
39 H 0.081 0.919
40 H 0.100 0.900
41 H 0.048 0.952
42 H 0.063 0.937
43 H 0.061 0.939
44 H 0.253 0.747
45 H 0.042 0.958
46 H 0.023 0.977
47 H 0.052 0.948
48 H 0.040 0.960
49 H 0.058 0.942
50 H 0.065 0.935
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.958 17.972 -5.606 24.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.145 4.145
3 C -0.171 4.171
4 C 0.084 3.916
5 H 0.090 0.910
6 C -0.174 4.174
7 C 0.304 3.696
8 O -0.407 6.407
9 N -0.334 5.334
10 C -0.052 4.052
11 C -0.031 4.031
12 O -0.283 6.283
13 C -0.003 4.003
14 H 0.088 0.912
15 C 0.064 3.936
16 N -0.328 5.328
17 C -0.352 4.352
18 H 0.098 0.902
19 C -0.205 4.205
20 N -0.571 5.571
21 Si 0.745 3.255
22 H -0.205 1.205
23 H -0.217 1.217
24 H -0.218 1.218
25 C 0.010 3.990
26 C -0.005 4.005
27 H 0.127 0.873
28 O -0.284 6.284
29 C -0.012 4.012
30 C -0.206 4.206
31 H 0.116 0.884
32 H 0.119 0.881
33 H 0.087 0.913
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.107 0.893
39 H 0.099 0.901
40 H 0.118 0.882
41 H 0.067 0.933
42 H 0.081 0.919
43 H 0.079 0.921
44 H 0.063 0.937
45 H 0.060 0.940
46 H 0.041 0.959
47 H 0.071 0.929
48 H 0.058 0.942
49 H 0.077 0.923
50 H 0.084 0.916
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -15.552 17.396 -5.888 24.065
hybrid contribution 0.324 -0.346 -0.245 0.533
sum -15.228 17.050 -6.133 23.669
Atomic orbital electron populations
1.23751 0.95126 1.02100 1.01462 1.22331 0.95480 0.96729 0.99934
1.20746 1.00846 0.93918 1.01624 1.20733 0.90874 0.93558 0.86455
0.90988 1.21809 1.01216 0.96338 0.98070 1.20469 0.78755 0.88801
0.81615 1.90691 1.61275 1.52743 1.36007 1.47647 1.50243 1.16290
1.19225 1.22551 1.03046 0.92342 0.87276 1.22844 0.94595 0.88879
0.96745 1.87955 1.59072 1.29936 1.51373 1.24060 1.00734 0.89921
0.85599 0.91204 1.21370 0.84731 0.92191 0.95306 1.44370 1.17823
1.26198 1.44455 1.19103 0.92147 1.05492 1.18470 0.90239 1.24802
0.98766 0.98086 0.98827 1.69919 1.36090 1.22517 1.28617 0.85999
0.83069 0.79040 0.77390 1.20507 1.21741 1.21751 1.21601 0.89828
0.90956 0.96644 1.22436 0.95377 0.83574 0.99158 0.87286 1.87917
1.38122 1.83227 1.19135 1.22407 0.96062 0.97537 0.85227 1.21712
0.99659 1.02548 0.96727 0.88409 0.88088 0.91316 0.91732 0.91691
0.87857 0.87927 0.89296 0.90119 0.88201 0.93338 0.91854 0.92126
0.93684 0.93981 0.95920 0.92932 0.94152 0.92260 0.91564 0.91410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.42 13.95 29.02 0.40 -1.02 16
2 C -0.14 -1.26 5.05 -101.06 -0.51 -1.77 16
3 C -0.11 -0.87 9.69 36.01 0.35 -0.52 16
4 C 0.14 1.58 1.78 -27.88 -0.05 1.53 16
5 H 0.07 0.85 7.25 -51.93 -0.38 0.48 16
6 C -0.13 -1.43 3.58 -27.89 -0.10 -1.53 16
7 C 0.52 7.81 7.55 -10.99 -0.08 7.73 16
8 O -0.53 -9.97 14.84 -8.88 -0.13 -10.10 16
9 N -0.60 -9.28 2.75 -164.42 -0.45 -9.73 16
10 C 0.07 0.85 6.26 -3.45 -0.02 0.83 16
11 C 0.05 0.61 7.03 37.46 0.26 0.87 16
12 O -0.37 -6.77 9.98 -35.23 -0.35 -7.12 16
13 C 0.06 1.10 4.02 -24.98 -0.10 1.00 16
14 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
15 C 0.19 4.69 5.04 -2.73 -0.01 4.68 16
16 N -0.60 -15.87 3.40 -169.95 -0.58 -16.45 16
17 C -0.22 -6.39 10.28 -15.06 -0.15 -6.55 16
18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16
19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16
20 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16
21 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16
22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
25 C 0.14 3.06 6.80 -2.79 -0.02 3.04 16
26 C 0.10 1.91 3.18 -67.04 -0.21 1.70 16
27 H 0.11 2.30 7.11 -51.93 -0.37 1.93 16
28 O -0.37 -4.80 9.01 -49.66 -0.45 -5.25 16
29 C 0.06 0.74 6.46 37.16 0.24 0.98 16
30 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16
31 H 0.10 0.71 7.84 -52.48 -0.41 0.30 16
32 H 0.10 0.63 8.05 -52.49 -0.42 0.21 16
33 H 0.07 0.58 7.50 -51.93 -0.39 0.19 16
34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.10 0.83 7.59 -51.93 -0.39 0.44 16
37 H 0.10 0.98 7.52 -51.93 -0.39 0.59 16
38 H 0.09 0.72 5.95 -51.93 -0.31 0.41 16
39 H 0.08 1.03 7.58 -51.93 -0.39 0.63 16
40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
42 H 0.06 1.76 7.32 -51.93 -0.38 1.38 16
43 H 0.06 1.63 7.43 -51.93 -0.39 1.24 16
44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
46 H 0.02 0.51 7.32 -51.93 -0.38 0.13 16
47 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16
48 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 401.72 15.07 6.05 6.05
Total: -1.00 -33.71 401.72 -8.88 -42.59
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: -8.80 Total: -0.13 kcal
Atomic # 6 Polarization: 9.16 SS G_CDS: 0.28 Total: 9.44 kcal
Atomic # 7 Polarization: -52.46 SS G_CDS: -0.46 Total: -52.92 kcal
Atomic # 8 Polarization: -21.54 SS G_CDS: -0.93 Total: -22.47 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -33.71 -8.88 -42.59 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001218032551.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.468 kcal
(2) G-P(sol) polarization free energy of solvation -33.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds