Wall clock time and date at job start Tue Mar 31 2020 22:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46962 * 2 1 4 4 C 1.42901 * 113.99909 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47050 * 29.99481 * 4 3 2 6 6 C 1.50696 * 109.46778 * 269.99868 * 4 3 2 7 7 O 1.21277 * 120.00202 * 351.48203 * 6 4 3 8 8 N 1.34774 * 119.99803 * 171.48939 * 6 4 3 9 9 C 1.47874 * 126.94534 * 354.94007 * 8 6 4 10 10 C 1.56016 * 105.10298 * 182.02550 * 9 8 6 11 11 H 1.09009 * 116.89238 * 159.21071 * 10 9 8 12 12 C 1.57076 * 99.61063 * 32.80833 * 10 9 8 13 13 C 1.49292 * 126.94833 * 174.97065 * 8 6 4 14 14 H 1.09007 * 116.78294 * 16.28906 * 13 8 6 15 15 C 1.56008 * 104.09403 * 246.67542 * 13 8 6 16 16 N 1.47871 * 105.10535 * 288.76257 * 15 13 8 17 17 C 1.36933 * 126.94518 * 181.98152 * 16 15 13 18 18 H 1.07999 * 119.99983 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00303 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99454 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47291 * 60.00168 * 21 19 17 23 23 H 1.48503 * 109.47141 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47090 * 300.00040 * 21 19 17 25 25 C 1.53001 * 109.47144 * 149.99711 * 4 3 2 26 26 C 1.53175 * 109.54147 * 54.07209 * 25 4 3 27 27 C 1.53105 * 109.15815 * 183.23689 * 26 25 4 28 28 O 1.42907 * 109.48154 * 57.47958 * 27 26 25 29 29 C 1.42909 * 114.10143 * 298.88797 * 28 27 26 30 30 C 1.53095 * 109.41304 * 61.15463 * 29 28 27 31 31 H 1.09002 * 109.46660 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47236 * 300.00128 * 1 2 3 33 33 H 1.09000 * 109.46816 * 60.00712 * 1 2 3 34 34 H 1.09000 * 109.47171 * 239.99486 * 2 1 3 35 35 H 1.09002 * 109.46834 * 119.99824 * 2 1 3 36 36 H 1.09000 * 110.31093 * 63.12084 * 9 8 6 37 37 H 1.09001 * 110.31481 * 300.93744 * 9 8 6 38 38 H 1.09008 * 112.36827 * 64.26978 * 12 10 9 39 39 H 1.08994 * 112.37547 * 191.71021 * 12 10 9 40 40 H 1.09001 * 110.31843 * 169.86017 * 15 13 8 41 41 H 1.09000 * 110.40581 * 47.71607 * 15 13 8 42 42 H 0.97007 * 119.99314 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.54443 * 174.25013 * 25 4 3 44 44 H 1.09003 * 109.52941 * 303.06133 * 26 25 4 45 45 H 1.09005 * 109.52161 * 63.24869 * 26 25 4 46 46 H 1.08995 * 109.41028 * 297.49988 * 27 26 25 47 47 H 1.09000 * 109.48599 * 177.50274 * 27 26 25 48 48 H 1.09007 * 109.47832 * 301.17979 * 29 28 27 49 49 H 1.08987 * 109.48308 * 181.14248 * 29 28 27 50 50 H 1.08994 * 109.51927 * 182.48747 * 30 29 28 51 51 H 1.09000 * 109.56861 * 62.33165 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9310 1.5001 1.4216 7 8 3.1435 1.5939 2.3392 8 7 5.2533 1.4316 1.6728 9 6 6.3348 1.2120 0.6884 10 6 7.6481 1.1715 1.5297 11 1 8.5104 0.6840 1.0745 12 6 7.0939 0.5260 2.8501 13 6 5.9224 1.5615 3.0010 14 1 5.2896 1.4551 3.8822 15 6 6.7330 2.8898 2.8898 16 7 7.8454 2.5860 1.9641 17 6 8.8525 3.4315 1.5822 18 1 9.6125 3.0904 0.8949 19 6 8.8968 4.7272 2.0786 20 7 7.9709 5.1427 2.9167 21 14 10.2704 5.8807 1.5571 22 1 10.2318 6.0622 0.0837 23 1 10.0911 7.1964 2.2221 24 1 11.5797 5.3010 1.9503 25 6 3.8410 2.7456 -0.7207 26 6 3.1164 3.9396 -0.0917 27 6 3.4701 5.2093 -0.8707 28 8 3.1144 5.0402 -2.2445 29 6 3.7981 3.9679 -2.8965 30 6 3.4560 2.6481 -2.2002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 6.3685 2.0342 -0.0264 37 1 6.1880 0.2645 0.1700 38 1 6.7317 -0.4904 2.6947 39 1 7.8076 0.5844 3.6718 40 1 7.1216 3.1789 3.8663 41 1 6.1074 3.6838 2.4820 42 1 8.0021 6.0480 3.2638 43 1 4.9183 2.8853 -0.6328 44 1 2.0396 3.7758 -0.1340 45 1 3.4286 4.0491 0.9469 46 1 4.5411 5.3955 -0.7928 47 1 2.9226 6.0553 -0.4551 48 1 4.8736 4.1379 -2.8450 49 1 3.4871 3.9197 -3.9400 50 1 4.0108 1.8350 -2.6681 51 1 2.3865 2.4564 -2.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267710968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:09 Heat of formation + Delta-G solvation = -74.102588 kcal Electronic energy + Delta-G solvation = -32506.180076 eV Core-core repulsion = 28407.315967 eV Total energy + Delta-G solvation = -4098.864109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54177 -39.32166 -38.29194 -36.90339 -34.33902 -33.56571 -31.57194 -31.12672 -30.94878 -29.30394 -28.63073 -27.45970 -25.27819 -24.08167 -23.50486 -22.97905 -22.80303 -20.61447 -20.07429 -19.79480 -18.59472 -17.44860 -16.84545 -16.38811 -16.25643 -15.80080 -15.63885 -15.27424 -14.89030 -14.63893 -14.51353 -14.35958 -14.01575 -13.71944 -13.52870 -13.14824 -12.96351 -12.55270 -12.30942 -12.18802 -12.03426 -11.96472 -11.83008 -11.69787 -11.38499 -11.28229 -11.17876 -11.06025 -10.98108 -10.89220 -10.74779 -10.66130 -10.55831 -10.31622 -10.19735 -10.14755 -10.05919 -9.67963 -9.45930 -8.97478 -8.70798 -8.04392 -6.98264 -5.81432 -3.16359 2.92535 3.21156 3.33950 3.38587 3.40822 3.73417 4.00150 4.37300 4.57540 4.68878 4.77595 4.93373 4.97981 5.06366 5.10130 5.12179 5.17435 5.24412 5.31178 5.33635 5.38846 5.50132 5.51115 5.56418 5.58622 5.64621 5.72058 5.74355 5.77478 5.83129 5.84309 5.86723 6.00288 6.04778 6.09482 6.17457 6.22981 6.29561 6.34978 6.43166 6.53123 6.55017 6.63958 7.10368 7.31491 7.37166 7.43803 7.66678 8.02837 8.06258 8.56278 9.05161 9.66125 10.34963 11.30270 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004583 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.908094 B = 6107.838885 C = 7659.095435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.089 3.911 5 H 0.077 0.923 6 C 0.507 3.493 7 O -0.539 6.539 8 N -0.604 5.604 9 C 0.080 3.920 10 C 0.141 3.859 11 H 0.106 0.894 12 C -0.152 4.152 13 C 0.097 3.903 14 H 0.112 0.888 15 C 0.175 3.825 16 N -0.596 5.596 17 C -0.234 4.234 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C -0.082 4.082 26 C -0.142 4.142 27 C 0.061 3.939 28 O -0.385 6.385 29 C 0.062 3.938 30 C -0.146 4.146 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.255 0.745 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -10.139 -8.965 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.027 3.973 5 H 0.095 0.905 6 C 0.294 3.706 7 O -0.417 6.417 8 N -0.340 5.340 9 C -0.045 4.045 10 C 0.032 3.968 11 H 0.124 0.876 12 C -0.192 4.192 13 C -0.005 4.005 14 H 0.130 0.870 15 C 0.050 3.950 16 N -0.320 5.320 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.100 4.100 26 C -0.179 4.179 27 C -0.015 4.015 28 O -0.304 6.304 29 C -0.015 4.015 30 C -0.184 4.184 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.109 0.891 50 H 0.088 0.912 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.381 -9.506 -8.545 15.855 hybrid contribution 1.139 0.199 -0.034 1.157 sum -8.242 -9.307 -8.579 15.104 Atomic orbital electron populations 1.21692 0.93611 1.01948 1.03197 1.22530 0.95823 0.84042 0.99726 1.87993 1.18396 1.26013 1.94394 1.21926 0.83028 0.99546 0.92766 0.90480 1.20793 0.81110 0.77058 0.91638 1.90667 1.54347 1.50307 1.46343 1.49260 1.04505 1.69991 1.10244 1.23375 0.89311 0.99294 0.92515 1.23161 0.93274 0.87819 0.92552 0.87575 1.24166 0.97951 0.96848 1.00204 1.24322 0.91805 0.98775 0.85636 0.86967 1.21914 0.87691 0.90398 0.94964 1.45222 1.28114 1.06972 1.51713 1.18980 1.02242 0.92052 1.22942 0.90253 1.24800 0.98566 0.97306 0.99314 1.69906 1.34401 1.17675 1.34403 0.86225 0.81424 0.80283 0.77942 1.21149 1.21589 1.21117 1.21333 1.01257 0.92945 0.94492 1.22078 1.01895 0.93927 1.00026 1.22609 1.00293 0.97502 0.81140 1.87891 1.66768 1.51713 1.24047 1.22530 0.96529 0.86145 0.96304 1.22201 1.03082 0.98411 0.94670 0.91351 0.91610 0.91970 0.93692 0.93355 0.90866 0.93017 0.91766 0.89774 0.92688 0.93463 0.93501 0.88724 0.90132 0.90657 0.92697 0.88889 0.93036 0.89109 0.91164 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.67 6.46 37.16 0.24 0.91 16 3 O -0.35 -5.23 8.09 -55.00 -0.45 -5.68 16 4 C 0.09 1.31 1.64 -27.88 -0.05 1.26 16 5 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 6 C 0.51 9.18 6.27 -10.99 -0.07 9.11 16 7 O -0.54 -11.61 16.88 -14.21 -0.24 -11.85 16 8 N -0.60 -10.73 2.95 -156.78 -0.46 -11.19 16 9 C 0.08 1.29 5.61 -1.67 -0.01 1.28 16 10 C 0.14 2.48 5.53 -62.56 -0.35 2.13 16 11 H 0.11 1.66 8.14 -51.92 -0.42 1.24 16 12 C -0.15 -2.49 6.81 -22.31 -0.15 -2.64 16 13 C 0.10 1.84 5.24 -62.56 -0.33 1.51 16 14 H 0.11 2.11 8.07 -51.93 -0.42 1.69 16 15 C 0.18 4.06 4.76 -1.68 -0.01 4.05 16 16 N -0.60 -13.68 3.02 -156.35 -0.47 -14.15 16 17 C -0.23 -5.99 10.38 -15.06 -0.16 -6.15 16 18 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 19 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 20 N -0.92 -25.91 10.56 55.49 0.59 -25.32 16 21 Si 0.91 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.08 -1.17 2.03 -90.44 -0.18 -1.36 16 26 C -0.14 -2.25 5.04 -26.59 -0.13 -2.39 16 27 C 0.06 0.92 6.84 37.21 0.25 1.17 16 28 O -0.39 -5.73 10.77 -35.23 -0.38 -6.11 16 29 C 0.06 0.75 6.84 37.21 0.25 1.01 16 30 C -0.15 -1.72 5.36 -26.59 -0.14 -1.87 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.26 6.11 -51.93 -0.32 0.94 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 1.42 7.46 -51.93 -0.39 1.03 16 41 H 0.05 1.26 7.67 -51.93 -0.40 0.86 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 1.48 5.67 -51.93 -0.29 1.19 16 44 H 0.08 1.32 7.45 -51.93 -0.39 0.93 16 45 H 0.07 1.39 7.53 -51.93 -0.39 1.00 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.09 0.90 8.14 -51.94 -0.42 0.48 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.97 7.77 -51.93 -0.40 0.57 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -31.15 393.20 -9.91 -41.06 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.86 Total: 4.41 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.54 Total: 6.76 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.35 Total: -50.66 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.06 Total: -23.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.15 -9.91 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267710968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.047 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds